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| ## see dtrecon as an exmaple | ## See HelpOnCommandTemplate for description of formatting ## ## Note: If you are modifying this page please refer to the ## CommandTemplate page and confirm that this page has the latest ## CommandTemplate formatting |
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| mri_motion_correct - averages a number of volumes and performs MotionCorrection = Synopsis = mri_motion_correct [outfile] [infile1] [infile2] [<options>] = Positional Arguments = || [outfile] || description || || [infile1] || description || || [infile2] || description || = Required Flagged Arguments = None = Optional Flagged Arguments = ||-?? [??] || description || = Outputs = || orig || averaged and motion corrected volume || = Description = description = Example 1 = mri_motion_correct ../orig 002 003 description = See Also = ["othercommand1"], ["othercommand2"] = Links = FreeSurfer = Methods Description = |
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| mri_motion_correct - averages a number of volumes and corrects for motion }}} = Synopsis = {{{ mri_motion_correct [outfile] [infile1] [infile2] [<options>] |
description description |
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| = Positional Arguments = {{{ [outfile] description [infile1] description [infile2] description }}} = Required Flagged Arguments = {{{ None }}} = Optional Flagged Arguments = {{{ -?? [??] description description }}} = Outputs = {{{ orig - averaged and motion corrected volume }}} = Example 1 = {{{ mri_motion_correct ../orig 002 003 }}} = See Also = ["minctrac"] = Author = JaneSmith = Links = FreeSurfer, FsFast |
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| ## For example: ["Belliveau1991"] ["References/NameYear"] = Description = |
["References/Lastname###"] |
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| = Methods Description = mri_motion_correct is a minctracc wrapper for averaging ["COR"] volumes = Category = ## For example: CategoryFreeSurferCommandVolumeConversion CategoryFreeSurferCommandMotionCorrection |
= Author/s = BruceFischl |
Name
mri_motion_correct - averages a number of volumes and performs MotionCorrection
Synopsis
mri_motion_correct [outfile] [infile1] [infile2] [<options>]
Positional Arguments
[outfile] |
description |
[infile1] |
description |
[infile2] |
description |
Required Flagged Arguments
None
Optional Flagged Arguments
-?? [??] |
description |
Outputs
orig |
averaged and motion corrected volume |
Description
description
Example 1
mri_motion_correct ../orig 002 003
description
See Also
["othercommand1"], ["othercommand2"]
Links
Methods Description
description description
References
["References/Lastname###"]
Reporting Bugs
Report bugs to <analysis-bugs@nmr.mgh.harvard.edu>