Results 1 - 12 of 12 results out of about 3769 pages. (0.91 seconds)
- recon-all . . . 8 matches
- ... proceed to run -autorecon3 ||
||-autorecon2-cp ||process stages 12-23 (uses -f w/ mri_normalize, -keep w/ mri_seg) ||
||-autorecon2-wm ||process stages 15-23 ||
||-autorecon2-pia...
- ReconAllDevTable . . . 3 matches
- ...|
||talairach.xfm ||
||<style="text-align:left" |1>-[[normalization]] ||nu.mgz ||[[mri_normalize]] -g 1 -mprage nu.mgz T1.mgz ||T1.mgz ||
||<style="text-align:left" |3>-[[skullstr...
- normalization2 . . . 2 matches
- ...
Creates a new brain.mgz volume. The -autorecon2-cp stage begins here.
If -noaseg flag is used, then aseg.mgz is not used by mri_normalize.
=== Programs ===
* [[mri_normalize]]...
- ReconAllTableStableV5.3 . . . 2 matches
- ...-n 2 --uchar transforms/talairach.xfm||nu.mgz ||
||-[[normalization]] ||nu.mgz ||[[mri_normalize]] -g 1 nu.mgz T1.mgz ||T1.mgz ||
||<style="text-align: left;" |3>-[[skullstrip]] |...
- ReconAllTableStableV5.1 . . . 2 matches
- ...-n 2 --uchar transforms/talairach.xfm||nu.mgz ||
||-[[normalization]] ||nu.mgz ||[[mri_normalize]] -g 1 nu.mgz T1.mgz ||T1.mgz ||
||<style="text-align: left;" |3>-[[skullstrip]] |...
- ReconAllTableStableV5 . . . 2 matches
- ...airach_avi.log ||transforms/talairach_avi.log ||
||-[[normalization]] ||nu.mgz ||[[mri_normalize]] -g 1 nu.mgz T1.mgz ||T1.mgz ||
||<style="text-align: left;" |5>-[[skullstrip]] |...
- ReconAllStableTablev4 . . . 2 matches
- ...<bgcolor='#FFFFE0'>-normalization||<bgcolor='#E0E0FF'>nu.mgz||<bgcolor='#E0E0FF'>[[mri_normalize]] -g 1 nu.mgz T1.mgz||<bgcolor='#E0E0FF'>T1.mgz||
||<|3(bgcolor='#FFFFE0'>-skullst...
- OtherUsefulFlags . . . 2 matches
- ...ign:left;" |3>-[[normalization2]] ||brainmask.mgz ||<style="text-align:left;" |3>[[mri_normalize]] -mprage -aseg aseg.presurf.mgz -mask brainmask.mgz norm.mgz brain.mgz ||<style="...
- normalization . . . 1 match
- ...ensity of the white matter is 110. If there are problems with the
normalization, users can add control points. See also [[normalization2]].
=== Programs ===
* [[mri_normalize]]...
- mri_watershed . . . 1 match
- ...o correction is applied to the intermediate result.
= Bugs =
None
= See Also =
[[mri_normalize]]
= Links =
FreeSurfer, FsFast
= Methods Description =
{{{
The "watershed" segme...
- FreeSurferCommandsIntensityNormalization . . . 1 match
- ... * [[mri_normalize]]...
- FreeSurferCommands . . . 1 match
- ...t]]
* [[mri_robust_template]]
* [[mri_nu_correct.mni]]
* [[talairach]]
* [[mri_normalize]]
* [[mri_watershed]]
* [[mri_em_register]]
* [[mri_ca_normalize]]
* [[mri...