Index TableOfContents

Name

mri_normalize - Procedure that takes the orig or nu volume from the cortical reconstruction as input and creates a new volume where white matter image values all range around 110.

Synopsis

mri_normalize [input directory] [output directory]

Arguments

Positional Arguments

argA

brief description

detailed description (eg, help file information)

argB

brief description

detailed description (eg, help file information)

Required Flagged Arguments

Optional Flagged Arguments

-prune <boolean> turn pruning of control points on/off (default=off). Useful if white is expanding into gm

Outputs

wm

wm volume of the cortical reconstruction is used as the input for mri_fill

Description

description

Examples

Example 1

mri_normalize SUBJECT/mri/nu SUBJECT/mri/wm

Uses the nu volume (nonuniformity corrected volume), and creates the wm volume, with white matter voxels around 110 image value

Bugs

None

See Also

["nu_correct"], ["mri_fill"]

Links

FreeSurfer, FsFast

Methods Description

description
description

References

["References/Lastname###"]

Reporting Bugs

Report bugs to <analysis-bugs@nmr.mgh.harvard.edu>

Author/s

BruceFischl