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| This proposes a new program, called `mri_overlap`, that will replace the redundant (and buggy) `mri_compute_seg_overlap` and `mri_compute_overlap`. A detailed report of the overlap results can be output to a json file. |
= mri_overlap = This page proposes a new program, called `mri_overlap`, that will replace the redundant (and buggy) `mri_compute_seg_overlap` and `mri_compute_overlap`. A detailed report of the overlap results can be output to a json file. |
mri_overlap
This page proposes a new program, called mri_overlap, that will replace the redundant (and buggy) mri_compute_seg_overlap and mri_compute_overlap. A detailed report of the overlap results can be output to a json file.
USAGE:
mri_overlap <vol1> <vol2> [options]
OPTIONAL ARGUMENTS:
-o, --out
Save detailed overlap report to a json file.
-m, --measures
List of measures to compute. By default, only dice scores
are computed. Options include:
dice - ...
jaccard - ...
voldiff - ...
-l, --labels
Space-separated list of labels to use. By default, the overlap
will be computed between all labels available in both input volumes.
-f, --labelfile
File with space-separated list of labels to use.
-s, --seg
Compute overlap between the major segmentation structures listed above.
-q, --quiet
Quiet mode - do not print computed results to stdout