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[[Navigation(children)]] '''Index''' [[TableOfContents]] |
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| mri_parse_sdcmdir --d [sdicomdir] [<options>] | mri_parse_sdcmdir --d sdicomdir [<options>] |
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| = Positional Arguments = |
= Arguments = == Positional Arguments == |
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= Required Flagged Arguments = || --d [sdicomdir] || path to siemens dicom directory || this is the name of the directory where the dicom files are located (required) || |
== Required Flagged Arguments == || --d sdicomdir || path to siemens dicom directory || this is the name of the directory where the dicom files are located (required) || |
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= Optional Flagged Arguments = || --o [outfile] || write results to outfile (default is stdout) || this is the name of the file to which the result will be printed. if unspecified, the results will be printed to stdout || |
== Optional Flagged Arguments == || --o outfile || write results to outfile (default is stdout) || this is the name of the file to which the result will be printed. if unspecified, the results will be printed to stdout || |
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| this program parses the Siemens DICOM files in a given directory, and prints out information about each file. the output is printed to stdout unless a file name is passed with the --o flag | mri_parse_sdcmdir parses the Siemens DICOM files in a given directory, and prints out information about each file. the output is printed to stdout unless a file name is passed with the --o flag |
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Navigation(children) Index TableOfContents
Name
mri_parse_sdcmdir - parses the DICOM files in a given directory
Synopsis
mri_parse_sdcmdir --d sdicomdir [<options>]
Arguments
Positional Arguments
none
Required Flagged Arguments
--d sdicomdir |
path to siemens dicom directory |
this is the name of the directory where the dicom files are located (required) |
Optional Flagged Arguments
--o outfile |
write results to outfile (default is stdout) |
this is the name of the file to which the result will be printed. if unspecified, the results will be printed to stdout |
--sortbyrun |
assign run numbers |
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--summarize |
only print out info for run leaders |
forces print out of information for the first file in the run |
-- help |
how to use this program |
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Outputs
stdout or outfile |
spreadsheet containing information about the DICOM files in a given directory |
Description
mri_parse_sdcmdir parses the Siemens DICOM files in a given directory, and prints out information about each file. the output is printed to stdout unless a file name is passed with the --o flag
the most useful information is that which cannot be easily obtained by probing a dicom file. this includes: the run number, number of frames in the run, number of slices in the run, and, for mosaics, the number of rows and cols in the volume
there are 14 columns in the output:
- File Number
- File Name
- Series Number
- Series Error Flag (1 for error)
- Image Number
- Mosaic Flag (1 for mosaics)
- Number of Rows in the Volume
- Number of Columns in the Volume
- Number of Slices in the Volume for the Series
- Number of Frames in the Series
- Repetition Time (sec)
- Echo Time (ms)
- Protocol Name - white space stripped
Examples
Example 1
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Example 2
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Bugs
None
See Also
["othercommand1"], ["othercommand2"]
Links
Methods Description
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References
["References/Lastname###"]
Reporting Bugs
Report bugs to <analysis-bugs@nmr.mgh.harvard.edu>