| Deletions are marked like this. | Additions are marked like this. |
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| mri_register - ? | mri_register - high-dimensional alignment with canonical atlas |
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| mri_register invol refvol outvol | mri_register [options] invol refvol outvol |
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| None |
|| -align || || || -T lta || || || -mask brainmask || || || -invert-and-save gcamfile || || || -dist distance || || || -regularize regularize || || || -regularize-mean regularizemean || || || -scale_smoothness smoothness || || || -nobright || || || -renormalize || || || -read_lta || || || -smoothness smoothness || || || -samples samples || || || -nsmall nsmall || || || -fixed || || || -optimal || || || -noneg noneg || || || -wm || || || -min_avgs <n> || || || -tl || || || -relabel relable || || || -relabel_avgs relable_avgs || || || -reset_avgs reset_avgs || || || -vf vf_fname || || || -diag diagfname || || || -tr tr || || || -te te || || || -example T1 seg || || || -<no>bigventricles || || || -uncompress || || || -secondpassrenorm || || |
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| ?? |
{{{ mri_ca_register -align -mask brainmask.mgz \ -T transforms/talairach.lta norm.mgz \ $FREESURFER_HOME/average/RB_all_2006-02-15.gca \ transforms/talairach.m3z }}} |
Index
Contents
Name
mri_register - high-dimensional alignment with canonical atlas
Synopsis
mri_register [options] invol refvol outvol
Arguments
Positional Arguments
invol |
input volume |
refvol |
reference volume |
outvol |
output volume |
Required Flagged Arguments
None
Optional Flagged Arguments
-align |
|
-T lta |
|
-mask brainmask |
|
-invert-and-save gcamfile |
|
-dist distance |
|
-regularize regularize |
|
-regularize-mean regularizemean |
|
-scale_smoothness smoothness |
|
-nobright |
|
-renormalize |
|
-read_lta |
|
-smoothness smoothness |
|
-samples samples |
|
-nsmall nsmall |
|
-fixed |
|
-optimal |
|
-noneg noneg |
|
-wm |
|
-min_avgs <n> |
|
-tl |
|
-relabel relable |
|
-relabel_avgs relable_avgs |
|
-reset_avgs reset_avgs |
|
-vf vf_fname |
|
-diag diagfname |
|
-tr tr |
|
-te te |
|
-example T1 seg |
|
-<no>bigventricles |
|
-uncompress |
|
-secondpassrenorm |
|
Outputs
outvol |
output volume |
Description
??
Examples
Example 1
mri_ca_register -align -mask brainmask.mgz \
-T transforms/talairach.lta norm.mgz \
$FREESURFER_HOME/average/RB_all_2006-02-15.gca \
transforms/talairach.m3z
Example 2
??
Bugs
None
See Also
Links
Methods Description
??
References
Reporting Bugs
Report bugs to <analysis-bugs@nmr.mgh.harvard.edu>