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["recon-all-nmr"], ["recon-all"] [[recon-all-nmr]], [[recon-all]]

Index

Name

mri_strip_skull - a binary that strips the skull

Synopsis

mri_strip_skull [-]name <tri_file|option> [-] [-tcl script]

Arguments

Positional Arguments

[-] prefix on name

don't read MRI images

[-] lone dash

infile is outfile

infile is outfile|cmdline (not sphere), skip scripts

Options

option

infile (~/bem)

outfile (~/bem)

datfile (cwd)

0

ic4.tri

[none]

[none-defaults], images written to ~/mri/tmp

1(script)

ic4.tri

brain.tri +images

brain.dat, images written to ~/mri/brain

2(script)

ic4.tri

inner_skull.tri

inner_skull.dat, images written to ~/mri/tmp

3(script)

ic4.tri

outer_skull.tri

outer_skull.dat, images written to ~/mri/tmp

4(script)

ic4.tri

outer_skin.tri

outer_skin.dat, images written to ~/mri/tmp

fname

fname

fname

[none--defaults], images written to ~/mri/tmp

Required Flagged Arguments

name

subject name

name of subject within already defined SUBJECTS_DIR

Optional Flagged Arguments

tcl script (movies)

use option=0

Outputs

see options above

Description

Examples

Example 2

description

Bugs

None

See Also

recon-all-nmr, recon-all

Links

FreeSurfer, FsFast

Methods Description

References

Reporting Bugs

Report bugs to <analysis-bugs@nmr.mgh.harvard.edu>

Author/s

mri_strip_skull (last edited 2008-04-29 11:45:16 by localhost)