## Note: This page was created with the CommandTemplate ## ## If you're modifying this page please take a look at the ## latest version of CommandTemplate to ensure that you're ## using the latest version of the CommandTemplate ## ## See HelpOnCommandTemplate for description of formatting '''Index''' <> = Name = mri_strip_skull - a binary that strips the skull = Synopsis = mri_strip_skull [-]name [-] [-tcl script] = Arguments = == Positional Arguments == || [-] prefix on name || don't read MRI images || || || [-] lone dash || infile is outfile || infile is outfile|cmdline (not sphere), skip scripts || == Options == || option || infile (~/bem) || outfile (~/bem) || datfile (cwd)|| || 0 || ic4.tri || [none] || [none-defaults], images written to ~/mri/tmp || || 1(script) || ic4.tri || brain.tri +images || brain.dat, images written to ~/mri/brain || || 2(script) || ic4.tri || inner_skull.tri || inner_skull.dat, images written to ~/mri/tmp || || 3(script) || ic4.tri || outer_skull.tri || outer_skull.dat, images written to ~/mri/tmp || || 4(script) || ic4.tri || outer_skin.tri || outer_skin.dat, images written to ~/mri/tmp || || fname || fname || fname || [none--defaults], images written to ~/mri/tmp || == Required Flagged Arguments == || name || subject name || name of subject within already defined SUBJECTS_DIR || == Optional Flagged Arguments == || tcl script (movies) || || use option=0 || = Outputs = see options above = Description = = Examples = == Example 2 == description = Bugs = None = See Also = [[recon-all-nmr]], [[recon-all]] = Links = FreeSurfer, FsFast = Methods Description = = References = = Reporting Bugs = Report bugs to = Author/s =