| Deletions are marked like this. | Additions are marked like this. |
| Line 14: | Line 14: |
| mri_cor2label- Converts values in a COR volume to a label. | mri_cor2label - converts values in a COR volume to a label. |
| Line 17: | Line 17: |
|
mri_cor2label --c <cordir> --id <labelid> --l <labelfile> |
|
| Line 19: | Line 21: |
|
none |
|
| Line 20: | Line 24: |
|
|| --c cordir || directory to find COR volume|| || --id labelid || 0-255 value in COR volume|| || --l labelfile || name of output file|| |
|| --c <cordir> || directory to find COR volume|| || --id <labelid> || 0-255 value in COR volume|| || --l <labelfile> || name of output file|| |
| Line 25: | Line 29: |
| || --v volfile || write label volume in file|| | || --v <volfile> || write label volume in file|| |
| Line 31: | Line 35: |
| Converts values in a COR volume to a label. The program searches the | ["mri_cor2label"] converts values in a COR volume to a label. The program searches the |
| Line 44: | Line 48: |
|
mri_cor2label --c /space/final/frontier/myparcellation --id 57 --l /home/brainmapper/spattemp/57.label |
mri_cor2label --c /space/final/frontier/myparcellation --id 57 --l /home/brainmapper/spattemp/57.label |
| Line 47: | Line 50: |
|
This will load the COR volume found in the directory /space/final/frontier/myparcellation and then search the volume for values equaling 57. The results are stored in 57.label in the directory /home/brainmapper/spattemp, which must exist prior to execution. |
This will load the COR volume found in the directory /space/final/frontier/myparcellation and then search the volume for values equaling 57. The results are stored in 57.label in the directory /home/brainmapper/spattemp, which must exist prior to execution. |
| Line 53: | Line 54: |
|
?? |
|
| Line 54: | Line 57: |
|
If the name of the label does not include a forward slash (ie, '/') then the program will attempt to put the label files in $SUBJECTS_DIR/subject/label. So, if you want the labels to go into the current directory, make sure to put a './' in front of the label. |
If the name of the label does not include a forward slash (ie, '/') then the program will attempt to put the label files in $SUBJECTS_DIR/subject/label. So, if you want the labels to go into the current directory, make sure to put a './' in front of the label. |
| Line 66: | Line 66: |
| NA | |
| Line 68: | Line 69: |
|
NA |
Index TableOfContents
Name
mri_cor2label - converts values in a COR volume to a label.
Synopsis
mri_cor2label --c <cordir> --id <labelid> --l <labelfile>
Arguments
Positional Arguments
none
Required Flagged Arguments
--c <cordir> |
directory to find COR volume |
--id <labelid> |
0-255 value in COR volume |
--l <labelfile> |
name of output file |
Optional Flagged Arguments
--v <volfile> |
write label volume in file |
--help |
print out help information |
--synth |
synthesizes a label (ignores values in COR volume) |
Outputs
Description
["mri_cor2label"] converts values in a COR volume to a label. The program searches the COR volume in directory 'cordir' for values equal to 'labelid'. The xyz values for each point are then computed assuming 1 mm^3 voxels and that xyz=0 at the center of the volume. The xyz values are then stored in 'labelfile' in the label file format; the vertex values are set to zero as is the statistic value. While this program can be used with any COR volume, it was designed to convert parcellation volumes, which happen to be stored in COR format. See tkmedit for more information on parcellations. The labelid must be within the range of 0 to 255. The label volume in mm^3 can be written to the argument of --v.
Examples
Example 1
mri_cor2label --c /space/final/frontier/myparcellation --id 57 --l /home/brainmapper/spattemp/57.label
This will load the COR volume found in the directory /space/final/frontier/myparcellation and then search the volume for values equaling 57. The results are stored in 57.label in the directory /home/brainmapper/spattemp, which must exist prior to execution.
Example 2
??
Bugs
If the name of the label does not include a forward slash (ie, '/') then the program will attempt to put the label files in $SUBJECTS_DIR/subject/label. So, if you want the labels to go into the current directory, make sure to put a './' in front of the label.
See Also
["tkmedit"], ["mri_label2label"]
Links
Methods Description
NA
References
NA
Reporting Bugs
Report bugs to <analysis-bugs@nmr.mgh.harvard.edu>