Name
mri_vol2roi
Synopsis
mri_vol2roi
Default Flagged Arguments
--srcvol |
input volume path |
--srcreg |
source registration (SrcXYZ = R*AnatXYZ) |
--label |
path to label file |
--labelreg |
label registration (LabelXYZ = L*AnatXYZ) |
- See warning before using this option.
--labeltal |
use tal xfm for labelreg |
--talxfm |
use talxfm intead of talairach.xfm |
--labelfillthresh thresh |
fraction of voxel |
--mskvol |
mask volume path |
--mskthresh |
threshold (0.5) mask threshold |
--msktail |
'<abs>', pos, or neg (mask tail) |
--mskframe |
0-based mask frame <0> |
--mskinvert |
invert the mask |
--roiavgtxt |
fname :output text file for ROI average |
--roiavg |
stem : output bfloat stem for ROI average |
--finalmskvol |
path in which to save final mask |
--finalmskcrs |
fname save col,row,slice in text fname |
Positional Arguments
[argA] |
description |
Required Flagged Arguments
-flag1 [arg1] |
description |
-flag2 [arg2] |
description |
Optional Flagged Arguments
-flag3 [arg3] |
description |
-flag4 [arg4] |
description |
Outputs
volume1 |
description |
volume2 |
description |
Description
description
Examples
Example 1
command foo -i f -o out
description
Example 2
mri_vol2roi foo -i f -o out -f fvalue
description
See Also
["othercommand1"], ["othercommand2"]
Links
Methods Description
description description
References
["References/Lastname###"]
Reporting Bugs
Report bugs to <analysis-bugs@nmr.mgh.harvard.edu>