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| ## see dtrecon as an exmaple |
## See HelpOnCommandTemplate for description of formatting ## ## Note: If you are modifying this page please refer to the ## CommandTemplate page and confirm that this page has the latest ## CommandTemplate formatting |
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{{{ arg1 description description }}} |
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{{{ -i <arg2> description description -o <arg3> description description }}} |
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{{{ -f <fvalue> description description |
|| -flag3 [arg3] || description || || -flag4 [arg4] || description || = Outputs = || volume1 || description || || volume2 || description || |
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-g <gvalue> description description }}} = Outputs = {{{ volume1 - description volume2 - description }}} |
= Description = description |
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{{{ mri_watershed foo -i f -o out }}} |
mri-watershed foo -i f -o out description |
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{{{ mri_watershed foo -i f -o out -f fvalue }}} |
mri-watershed foo -i f -o out -f fvalue description |
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= Author = JaneSmith |
= Links = FreeSurfer, FsFast |
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= Links = FreeSurfer |
= Methods Description = {{{ description description }}} |
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## For example: ["Belliveau1991"] ["References/NameYear"] |
["References/Lastname###"] |
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= Category = ## For example: CategoryFreeSurferCommandVolumeConversion CategoryFreeSurferCommandSkullStripping |
= Author/s = JaneSmith |
Name
mri_watershed - strips skull and other outer non-brain voxels from a normalized T1 volume
Synopsis
mri_watershed arg1 -i <arg2> -o <arg3> [<options>]
Positional Arguments
[argA] |
description |
Required Flagged Arguments
-flag1 [arg1] |
description |
-flag2 [arg2] |
description |
Optional Flagged Arguments
-flag3 [arg3] |
description |
-flag4 [arg4] |
description |
Outputs
volume1 |
description |
volume2 |
description |
Description
description
Example 1
mri-watershed foo -i f -o out
description
Example 2
mri-watershed foo -i f -o out -f fvalue
description
See Also
["othercommand1"], ["othercommand2"]
Links
Methods Description
description description
References
["References/Lastname###"]
Reporting Bugs
Report bugs to <analysis-bugs@nmr.mgh.harvard.edu>