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| mri_watershed - strips skull and other outer non-brain voxels from a normalized T1 volume |
mri_watershed - strips skull and other outer non-brain voxels from an acquired volume (usually T1). |
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| mri_watershed arg1 -i <arg2> -o <arg3> [<options>] | mri_watershed [<options>] <input volume> <brain volume> |
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| || [argA] || description || | |
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|| -flag1 [arg1] || description || || -flag2 [arg2] || description || |
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|| -flag3 [arg3] || description || || -flag4 [arg4] || description || |
|| -atlas || Use the atlas information to correct the segmentation. When the segmented brain is not correct, this option might help you.. || || -surf [surfname] || Save the BEM surfaces. In order to get the surfaces consistent with tkmedit, you have to use the option -useSRAS. || || -useSRAS || Use the surface RAS coordinates (not the scanner RAS) for surfaces. |
Name
mri_watershed - strips skull and other outer non-brain voxels from an acquired volume (usually T1).
Synopsis
mri_watershed [<options>] <input volume> <brain volume>
Positional Arguments
Required Flagged Arguments
Optional Flagged Arguments
-atlas |
Use the atlas information to correct the segmentation. When the segmented brain is not correct, this option might help you.. |
-surf [surfname] |
Save the BEM surfaces. In order to get the surfaces consistent with tkmedit, you have to use the option -useSRAS. |
|| -useSRAS || Use the surface RAS coordinates (not the scanner RAS) for surfaces.
Outputs
volume1 |
description |
volume2 |
description |
Description
description
Example 1
mri-watershed foo -i f -o out
description
Example 2
mri-watershed foo -i f -o out -f fvalue
description
See Also
["othercommand1"], ["othercommand2"]
Links
Methods Description
description description
References
["References/Lastname###"]
Reporting Bugs
Report bugs to <analysis-bugs@nmr.mgh.harvard.edu>