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| = mri_watershed = | ## See HelpOnCommandTemplate for description of formatting ## ## Note: If you are modifying this page please refer to the ## CommandTemplate page and confirm that this page has the latest ## CommandTemplate formatting |
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| mri_watershed - strip skull and other non-brain tissue voxels from a normalized T1 volume | = Name = mri_watershed - strips skull and other outer non-brain voxels from a normalized T1 volume |
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| command argA argB -flag1 <arg1> -flag2 <arg2> -flag3 <arg3> | mri_watershed arg1 -i <arg2> -o <arg3> [<options>] |
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| argA Description argB Description |
|| [argA] || description || |
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| -flag1 <arg1> Description - flag2 <arg2> Description |
|| -flag1 [arg1] || description || || -flag2 [arg2] || description || |
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| || -flag3 [arg3] || description || || -flag4 [arg4] || description || = Outputs = || volume1 || description || || volume2 || description || |
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| -flag3 <arg3> Description. = Outputs = file1 Description file2 Description |
= Description = description |
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| command argA argB -flag1 foo -flag2 goo | mri-watershed foo -i f -o out |
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| Description | description |
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| command argA argB -flag1 foo -flag2 goo -flag3 hoo | mri-watershed foo -i f -o out -f fvalue |
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| Description | description |
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| = Author = JaneSmith |
= See Also = ["othercommand1"], ["othercommand2"] |
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| CommandGuide SkullStripping |
FreeSurfer, FsFast = Methods Description = {{{ description description }}} |
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| [wiki:Self:References#NameYear NameYear] SkullStripping |
["References/Lastname###"] |
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| = References = [wiki:Self:References#NameYear NameYear] |
= Reporting Bugs = Report bugs to <analysis-bugs@nmr.mgh.harvard.edu> |
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| = Category = CategoryFreeSurferCommandSkullStripping |
= Author/s = JaneSmith |
Name
mri_watershed - strips skull and other outer non-brain voxels from a normalized T1 volume
Synopsis
mri_watershed arg1 -i <arg2> -o <arg3> [<options>]
Positional Arguments
[argA] |
description |
Required Flagged Arguments
-flag1 [arg1] |
description |
-flag2 [arg2] |
description |
Optional Flagged Arguments
-flag3 [arg3] |
description |
-flag4 [arg4] |
description |
Outputs
volume1 |
description |
volume2 |
description |
Description
description
Example 1
mri-watershed foo -i f -o out
description
Example 2
mri-watershed foo -i f -o out -f fvalue
description
See Also
["othercommand1"], ["othercommand2"]
Links
Methods Description
description description
References
["References/Lastname###"]
Reporting Bugs
Report bugs to <analysis-bugs@nmr.mgh.harvard.edu>