|
Size: 935
Comment: Modified for new Template.
|
Size: 1137
Comment: New formatting.
|
| Deletions are marked like this. | Additions are marked like this. |
| Line 1: | Line 1: |
| = mri_watershed = | |
| Line 3: | Line 2: |
| mri_watershed - strip skull and other non-brain tissue voxels from a normalized T1 volume | ## see dtrecon as an exmaple = Name = {{{ mri_watershed - strips skull and other outer non-brain voxels from a normalized T1 volume }}} |
| Line 6: | Line 8: |
| command argA argB -flag1 <arg1> -flag2 <arg2> -flag3 <arg3> | {{{ mri_watershed arg1 -i <arg2> -o <arg3> [<options>] }}} |
| Line 9: | Line 13: |
| argA Description argB Description |
{{{ arg1 description description }}} |
| Line 18: | Line 20: |
| -flag1 <arg1> | {{{ -i <arg2> description description |
| Line 20: | Line 25: |
| Description - flag2 <arg2> Description |
-o <arg3> description description }}} |
| Line 27: | Line 31: |
| {{{ -f <fvalue> description description |
|
| Line 28: | Line 36: |
| -flag3 <arg3> Description. |
-g <gvalue> description description }}} |
| Line 33: | Line 42: |
| file1 Description file2 Description |
{{{ volume1 - description volume2 - description }}} |
| Line 42: | Line 48: |
| command argA argB -flag1 foo -flag2 goo Description |
{{{ mri_watershed foo -i f -o out }}} |
| Line 47: | Line 53: |
| command argA argB -flag1 foo -flag2 goo -flag3 hoo | {{{ mri_watershed foo -i f -o out -f fvalue }}} |
| Line 49: | Line 57: |
| Description | = See Also = ["othercommand1"] ["othercommand2"] |
| Line 55: | Line 66: |
| CommandGuide SkullStripping |
FreeSurfer |
| Line 59: | Line 69: |
| [wiki:Self:References#NameYear NameYear] SkullStripping |
## For example: ["Belliveau1991"] ["References/NameYear"] |
| Line 62: | Line 72: |
| = References = [wiki:Self:References#NameYear NameYear] |
= Reporting Bugs = Report bugs to <analysis-bugs@nmr.mgh.harvard.edu> |
| Line 66: | Line 76: |
| ## For example: CategoryFreeSurferCommandVolumeConversion | |
| Line 67: | Line 78: |
Name
mri_watershed - strips skull and other outer non-brain voxels from a normalized T1 volume
Synopsis
mri_watershed arg1 -i <arg2> -o <arg3> [<options>]
Positional Arguments
arg1 description description
Required Flagged Arguments
-i <arg2> description description -o <arg3> description description
Optional Flagged Arguments
-f <fvalue> description description -g <gvalue> description description
Outputs
volume1 - description volume2 - description
Example 1
mri_watershed foo -i f -o out
Example 2
mri_watershed foo -i f -o out -f fvalue
See Also
- ["othercommand1"] ["othercommand2"]
Author
Links
References
- ["References/NameYear"]
Reporting Bugs
Report bugs to <analysis-bugs@nmr.mgh.harvard.edu>