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| ## see dtrecon as an exmaple | |
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mri_watershed - strips skull and other outer non-brain tissue voxels from a normalized T1 volume |
{{{ mri_watershed - strips skull and other outer non-brain voxels from a normalized T1 volume }}} |
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| command argA argB -flag1 <arg1> -flag2 <arg2> -flag3 <arg3> | {{{ mri_watershed arg1 -i <arg2> -o <arg3> [<options>] }}} |
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| argA Description argB Description |
{{{ arg1 description description }}} |
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| -flag1 <arg1> | {{{ -i <arg2> description description |
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| Description - flag2 <arg2> Description |
-o <arg3> description description }}} |
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| {{{ -f <fvalue> description description |
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| -flag3 <arg3> Description. |
-g <gvalue> description description }}} |
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| file1 Description file2 Description |
{{{ volume1 - description volume2 - description }}} |
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| command argA argB -flag1 foo -flag2 goo Description |
{{{ mri_watershed foo -i f -o out }}} |
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| command argA argB -flag1 foo -flag2 goo -flag3 hoo Description |
{{{ mri_watershed foo -i f -o out -f fvalue }}} |
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| ["command2"] ["command3"] |
["othercommand1"], ["othercommand2"] |
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| JaneSmith | JaneSmith |
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| CommandGuide SkullStripping |
FreeSurfer |
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| [wiki:Self:References#NameYear NameYear] | ## For example: ["Belliveau1991"] ["References/NameYear"] = Reporting Bugs = Report bugs to <analysis-bugs@nmr.mgh.harvard.edu> |
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| CategoryFreeSurferCommandSkullStripping | ## For example: CategoryFreeSurferCommandVolumeConversion CategoryFreeSurferCommandSkullStripping |
Name
mri_watershed - strips skull and other outer non-brain voxels from a normalized T1 volume
Synopsis
mri_watershed arg1 -i <arg2> -o <arg3> [<options>]
Positional Arguments
arg1 description description
Required Flagged Arguments
-i <arg2> description description -o <arg3> description description
Optional Flagged Arguments
-f <fvalue> description description -g <gvalue> description description
Outputs
volume1 - description volume2 - description
Example 1
mri_watershed foo -i f -o out
Example 2
mri_watershed foo -i f -o out -f fvalue
See Also
["othercommand1"], ["othercommand2"]
Author
Links
References
["References/NameYear"]
Reporting Bugs
Report bugs to <analysis-bugs@nmr.mgh.harvard.edu>