Name
mri_watershed - strips skull and other outer non-brain voxels from an acquired volume (usually T1).
Synopsis
mri_watershed [<options>] <input volume> <brain volume>
Positional Arguments
Required Flagged Arguments
Optional Flagged Arguments
-atlas |
Use the atlas information to correct the segmentation. When the segmented brain is not correct, this option might help you.. |
-surf [surfname] |
Save the BEM surfaces. In order to get the surfaces consistent with tkmedit, you have to use the option -useSRAS. |
|| -useSRAS || Use the surface RAS coordinates (not the scanner RAS) for surfaces.
Outputs
volume1 |
description |
volume2 |
description |
Description
description
Example 1
mri-watershed foo -i f -o out
description
Example 2
mri-watershed foo -i f -o out -f fvalue
description
See Also
["othercommand1"], ["othercommand2"]
Links
Methods Description
description description
References
["References/Lastname###"]
Reporting Bugs
Report bugs to <analysis-bugs@nmr.mgh.harvard.edu>