| Deletions are marked like this. | Additions are marked like this. |
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number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard error (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name |
|| ''Data column'' || ''units'' || ''Comments'' || ||Structure Name || NA || || ||Number of Vertices || unitless || ||Surface Area || mm^2 || total surface area || ||Gray Matter || Volume mm || total gray matter volume || ||Average Thickness || mm || average cortical thickness || ||Thickness StdDev || mm ||+- standard error (mm) || ||Integrated Rectified Mean Curvature || mm^-1 || || ||Integrated Rectified Gaussian Curvature || mm^-2 || || ||Folding Index || unitless || a la Van Essen || ||Intrinsic Curvature Index || unitless || a la Van Essen || |
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| ["othercommand1"], ["othercommand2"] | ["mris_curvature_stats"], |
Index TableOfContents
Name
mris_anatomical_stats - measures a number of anatomical properties
Synopsis
mris_anatomical_stats [options] <subjectname> <hemi> [<surfacename>]
Arguments
Required Positional Arguments
<subjectname> |
subject name |
<hemi> |
hemisphere |
Optional Positional Arguments
<surfacename> |
surface name |
Required Flagged Arguments
none
Optional Flagged Arguments
-i <low thresh> <hi thresh> |
only consider thicknesses in the specified range. |
-l <label file> |
limit calculations to specified label |
-t <thickness file> |
use specified file for computing thickness statistics |
-a <annotation file> |
compute properties for each label in the annotation file separately |
-b |
tabular output |
Outputs
Tabular output includes the following:
Data column |
units |
Comments |
Structure Name |
NA |
|
Number of Vertices |
unitless |
|
Surface Area |
mm^2 |
total surface area |
Gray Matter |
Volume mm |
total gray matter volume |
Average Thickness |
mm |
average cortical thickness |
Thickness StdDev |
mm |
+- standard error (mm) |
Integrated Rectified Mean Curvature |
mm^-1 |
|
Integrated Rectified Gaussian Curvature |
mm^-2 |
|
Folding Index |
unitless |
a la Van Essen |
Intrinsic Curvature Index |
unitless |
a la Van Essen |
Description
["mris_anatomical_stats"] computes a number of anatomical properties
Examples
Example 1
mris_anatomical_stats -a subjid/label/lh.aparc.annot -b subjid lh
Example 2
??
Bugs
none
See Also
["mris_curvature_stats"],
Links
Methods Description
??
References
["References/Lastname###"]
Reporting Bugs
Report bugs to <analysis-bugs@nmr.mgh.harvard.edu>