Results 1 - 11 of 11 results out of about 3674 pages. (0.97 seconds)
- recon-all . . . 4 matches
- ...called expert.opts is created containing these lines:
{{{
mri_em_register -p .5
mris_fix_topology -s 100
}}}
then the option "-p .5" will be passed to mri_em_register, and "-s 10...
- OtherUsefulFlags . . . 3 matches
- ...nofix ||cp ?h.inflated.nofix ?h.inflated ||?h.inflated ||
||?h.qsphere.nofix ||[[mris_fix_topology]] -mgz -sphere qsphere.nofix -ga <subjid> ?h ||?h.orig ||
||?h.orig ||[[mris_eul...
- TopologyFixer . . . 1 match
- ...ly run during recon-all, using the three programs below.
=== Programs ===
* [[mris_fix_topology]]
* [[mris_euler_number]]
* [[mris_remove_intersection]]
=== Manual Inspecti...
- ReconAllTableStableV5.3 . . . 1 match
- ...nofix ||cp ?h.inflated.nofix ?h.inflated ||?h.inflated ||
||?h.qsphere.nofix ||[[mris_fix_topology]] -mgz -sphere qsphere.nofix -ga <subjid> ?h ||?h.orig ||
||?h.orig ||[[mris_eul...
- ReconAllTableStableV5.1 . . . 1 match
- ...nofix ||cp ?h.inflated.nofix ?h.inflated ||?h.inflated ||
||?h.qsphere.nofix ||[[mris_fix_topology]] -mgz -sphere qsphere.nofix -ga <subjid> ?h ||?h.orig ||
||?h.orig ||[[mris_eul...
- ReconAllTableStableV5 . . . 1 match
- ...nofix ||cp ?h.inflated.nofix ?h.inflated ||?h.inflated ||
||?h.qsphere.nofix ||[[mris_fix_topology]] -mgz -sphere qsphere.nofix -ga <subjid> ?h ||?h.orig ||
||?h.orig ||[[mris_eul...
- ReconAllStableTablev4 . . . 1 match
- ...0E0FF'>?h.inflated||
||<bgcolor='#E0E0FF'>?h.qsphere.nofix||<bgcolor='#E0E0FF'>[[mris_fix_topology]] -mgz -sphere qsphere.nofix -ga <subjid> ?h||<bgcolor='#E0E0FF'>?h.orig||
||<bg...
- ReconAllDevTable . . . 1 match
- ...nofix ||cp ?h.inflated.nofix ?h.inflated ||?h.inflated ||
||?h.qsphere.nofix ||[[mris_fix_topology]] -mgz -sphere qsphere.nofix -ga <subjid> ?h ||?h.orig ||
||?h.orig ||[[mris_eul...
- LongitudinalProcessing45 . . . 1 match
- ...{{NoRandomness = 1}}} (always use same seed for RNG).
Affects [[mris_smooth]], [[mris_fix_topology]], [[mris_topo_fixer]], [[mris_sphere]], and [[mris_ca_label]])
=== Input (-i) ...
- LongitudinalProcessing . . . 1 match
- ...{{NoRandomness = 1}}} (always use same seed for RNG).
Affects [[mris_smooth]], [[mris_fix_topology]], [[mris_topo_fixer]], [[mris_sphere]], and [[mris_ca_label]])
=== Input (-i) ...
- FreeSurferCommands . . . 1 match
- ..._tessellate]]
* [[mris_smooth]]
* [[mris_inflate]]
* [[mris_sphere]]
* [[mris_fix_topology]]
* [[mris_make_surfaces]]
* [[mris_surf2vol]]
* [[mris_register]]
* [[m...