Index TableOfContents
Name
mris_glm -
Synopsis
Arguments
Raw Data Input Options
--fsgd fname |
FreeSurfer Group Descriptor File |
--design fname |
name of design matrix (ascii) |
--surfmeas name |
input file or name of surface measure |
--i input1 input2 ...> |
input file list |
--frame M |
use 0-based Mth frame (default is 0) |
--hemi hemi |
hemisphere (lh or rh) |
--trgsubj subject |
target subject |
--icoorder order |
order of icosahedral tesselation (default 7) |
--nsmooth N |
number of smoothing iterations |
==Processed Data Input Options==
--beta_in name <fmt> |
parameter estimates from previous |
--var_in name <fmt> |
reserr var from previous |
Estimation Outputs
--y name <fmt> |
input data after resampling and smoothing |
--beta name <fmt> |
parameter estimates |
--var name <fmt> |
variance of residual error |
--yhat name <fmt> |
signal estimate |
--eres name <fmt> |
residual error |
--xmat matfile |
save design matrix in matlab4 format |
Group Contrast Outputs
--contrast fname |
file containing group contrast matrix (ascii) |
--gcv c1 ... cN |
group contrast vector specified on cmdline (see MrisGlmGroupContrastVectorHelp |
--ces name <fmt> |
contrast effect size |
--t name <fmt> |
t-ratio of contrast |
--sigt name <fmt> |
signficance of t-ratio (ie, t-Test) |
Description
description
Example of Estimation Step
mris_glm --surfmeas $meas --hemi $hemi --trgsubj $trgt --fsgd $fsdf $slp --beta ./beta${sufx} bfloat --var ./var${sufx}.w paint --y ./y${sufx}_000.bfloat --nsmooth $sm
In this example, $meas might be thickness, $hemi rh or lh, $trgt would be the average subject to paint on, $fsdf the group descriptor file, $slp would be DODS or DOSS, $sufx some combination of the other variables to tag your output file, and $sm your predetermined smoothing kernal.
Example of Inference Step
Bugs
None
See Also
["othercommand1"], ["othercommand2"]
Links
Methods Description
description description
References
["References/Lastname###"]
Reporting Bugs
Report bugs to <analysis-bugs@nmr.mgh.harvard.edu>