Name

mris_make_surfaces - Generates surface files for cortical and white matter surfaces, curvature file for cortical thickness and surface file estimate for layer IV of cortical sheet

Synopsis

mris_make_surfaces [options] <subject name> <hemisphere>

Arguments

Positional Arguments

Subject Name
Hemisphere	r(right) or l(left) brain hemisphere

Required Flagged Arguments

none

Optional Flagged Arguments

-q	Omit self-intersection and only generate gray/white surface
-c	Create curvature and area files from white matter surface
-a <avgs>	Average curvature values <avgs> times (default=10)
-whiteonly	Only generate white matter surface
-orig_white <surf>	specify a white surface to start with
-orig_pial <surf>	specify a white surface to start with
-w <value>	unknown
-cover_seg	generate a ?h.white surface from a specified segmentation (also for pial, but it doesn't work well because of the inability to resolve deep narrow sulci).

Outputs

??	description
??	description

Description

This program positions the tessellation of the cortical surface at the white matter surface, then the gray matter surface and generate surface files for these surfaces as well as a 'curvature' file for the cortical thickness, and a surface file which approximates layer IV of the cortical sheet.

Examples

Example 1

Command:

Description:

Example 2

Command:

Description:

Bugs

None

Links

FreeSurfer, FsFast

Methods Description

N/A

References

References/Lastname###

Reporting Bugs

Report bugs to < analysis-bugs@nmr.mgh.harvard.edu >

Author/s

DougGreve, BruceFischl

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-'''Index'''

<<TableOfContents>>
+'''Index''' <<TableOfContents>>
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-|| Subject Name ||  ||    ||

|| Hemisphere || r(right) or l(left) brain hemisphere   ||   ||
+||Subject Name || || ||

||Hemisphere ||r(right) or l(left) brain hemisphere || ||
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-|| none ||
+||none ||
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-|| -q || Omit self-intersection and only generate gray/white surface  || ||

|| -c || Create curvature and area files from white matter surface || ||

|| -a <avgs> ||  Average curvature values <avgs> times (default=10)  || ||

|| -whiteonly || Only generate white matter surface  || ||

|| -orig_white <surf> || specify a white surface to start with || ||

|| -orig_pial <surf> || specify a white surface to start with || ||

|| -w <value> || unknown || ||
+||-q ||Omit self-intersection and only generate gray/white surface || ||

||-c ||Create curvature and area files from white matter surface || ||

||-a <avgs> ||Average curvature values <avgs> times (default=10) || ||

||-whiteonly ||Only generate white matter surface || ||

||-orig_white <surf> ||specify a white surface to start with || ||

||-orig_pial <surf> ||specify a white surface to start with || ||

||-w <value> ||unknown || ||

||-cover_seg||generate a ?h.white surface from a specified segmentation (also for<<BR>>pial, but it doesn't work well because of the inability to resolve<<BR>>deep narrow sulci).|| ||
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-|| ?? || description ||

|| ?? || description ||
+||?? ||description ||

||?? ||description ||
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 Command:
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-[[References/Lastname###]]
+[[References/Lastname##|References/Lastname###]]
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-Report bugs to <analysis-bugs@nmr.mgh.harvard.edu>
+Report bugs to < analysis-bugs@nmr.mgh.harvard.edu >