| Deletions are marked like this. | Additions are marked like this. |
| Line 13: | Line 13: |
|
= Description = This program positions the tessellation of the cortical surface at the white matter surface, then the gray matter surface and generate surface files for these surfaces as well as a 'curvature' file for the cortical thickness, and a surface file which approximates layer IV of the cortical sheet. |
|
| Line 23: | Line 26: |
|
||none || |
None |
| Line 27: | Line 29: |
|
||-q ||Omit self-intersection and only generate gray/white surface || || ||-c ||Create curvature and area files from white matter surface || || ||-a <avgs> ||Average curvature values <avgs> times (default=10) || || ||-whiteonly ||Only generate white matter surface || || ||-orig_white <surf> ||specify a white surface to start with || || ||-orig_pial <surf> ||specify a white surface to start with || || ||-w <value> ||unknown || || ||-cover_seg||generate a ?h.white surface from a specified segmentation (also for<<BR>>pial, but it doesn't work well because of the inability to resolve<<BR>>deep narrow sulci).|| || = Outputs = ||?? ||description || ||?? ||description || = Description = This program positions the tessellation of the cortical surface at the white matter surface, then the gray matter surface and generate surface files for these surfaces as well as a 'curvature' file for the cortical thickness, and a surface file which approximates layer IV of the cortical sheet. |
||-q ||Omit self-intersection and only generate gray/white surface || ||-c ||Create curvature and area files from white matter surface || ||-a <avgs> ||Average curvature values <avgs> times (default=10) || ||-whiteonly ||Only generate white matter surface || ||-orig_white <surf> ||specify a white surface to start with || ||-orig_pial <surf> ||specify a white surface to start with || ||-w <value> ||unknown || |
| Line 56: | Line 48: |
|
= Bugs = None |
|
| Line 65: | Line 54: |
|
= Methods Description = {{{ N/A }}} = References = [[References/Lastname##|References/Lastname###]] |
Index
Contents
Name
mris_make_surfaces - Generates surface files for cortical and white matter surfaces, curvature file for cortical thickness and surface file estimate for layer IV of cortical sheet
Description
This program positions the tessellation of the cortical surface at the white matter surface, then the gray matter surface and generate surface files for these surfaces as well as a 'curvature' file for the cortical thickness, and a surface file which approximates layer IV of the cortical sheet.
Synopsis
mris_make_surfaces [options] <subject name> <hemisphere>
Arguments
Positional Arguments
Subject Name |
|
|
Hemisphere |
r(right) or l(left) brain hemisphere |
|
Required Flagged Arguments
None
Optional Flagged Arguments
-q |
Omit self-intersection and only generate gray/white surface |
-c |
Create curvature and area files from white matter surface |
-a <avgs> |
Average curvature values <avgs> times (default=10) |
-whiteonly |
Only generate white matter surface |
-orig_white <surf> |
specify a white surface to start with |
-orig_pial <surf> |
specify a white surface to start with |
-w <value> |
unknown |
Examples
Example 1
Command:
Description:
Example 2
Command:
Description:
See Also
Links
Reporting Bugs
Report bugs to < analysis-bugs@nmr.mgh.harvard.edu >