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- SurfaceRegAndTemplates . . . 4 matches
- ...rocess diagram ==
The diagram below summarizes the registration process. Program [[mris_register]] inputs a specific subject's ?h.sphere file and associated sulc and curv data fro...
- surfreg . . . 2 matches
- ...atterns found in ?h.sulc and then fine tuned
using the small-scale patterns as in ?h.curv.
Calls mris_register. Creates surf/?h.sphere.reg.
=== Programs ===
* [[mris_register]]...
- recon-all . . . 2 matches
- ...here]]
* [[mris_fix_topology]]
* [[mris_make_surfaces]]
* [[mri_surf2vol]]
* [[mris_register]]
* [[mrisp_paint]]
* [[mris_ca_label]]
* [[mris_anatomical_stats]]
* [[mri_ap...
- mris_make_template . . . 1 match
- ...from multiple subjects and produces a "template". This template is later used by [[mris_register]] to register the sphere surface of individual subjects to the average surface.
R...
- mri_cvs_register . . . 1 match
- ...ere the two subjects have different SUBJECTS_DIR's
= Bugs =
None
= See Also =
[[mris_register]], [[mri_nl_align]], [[mris_resample]], [[createMorph]], [[applyMorph]], [[exportG...
- ReconAllTableStableV5.3 . . . 1 match
- ...[mris_sphere]] ?h.inflated ?h.sphere ||?h.sphere ||
||-[[surfreg]] ||?h.sphere ||[[mris_register]] -curv ?h.sphere $FREESURFER_HOME/average/?h.average.curvature.filled.buckner40.t...
- ReconAllTableStableV5.1 . . . 1 match
- ...[mris_sphere]] ?h.inflated ?h.sphere ||?h.sphere ||
||-[[surfreg]] ||?h.sphere ||[[mris_register]] -curv ?h.sphere $FREESURFER_HOME/average/?h.average.curvature.filled.buckner40.t...
- ReconAllTableStableV5 . . . 1 match
- ...[mris_sphere]] ?h.inflated ?h.sphere ||?h.sphere ||
||-[[surfreg]] ||?h.sphere ||[[mris_register]] -curv ?h.sphere $FREESURFER_HOME/average/?h.average.curvature.filled.buckner40.t...
- ReconAllStableTablev4 . . . 1 match
- ...
||<bgcolor='#FFFFE0'>-surfreg||<bgcolor='#E0E0FF'>?h.sphere||<bgcolor='#E0E0FF'>[[mris_register]] -curv ?h.sphere $FREESURFER_HOME/average/?h.average.curvature.filled.buckner40.t...
- ReconAllDevTable . . . 1 match
- ...sphere ||
||<style="text-align:left">?h.smoothwm ||
||-[[surfreg]] ||?h.sphere ||[[mris_register]] -curv ?h.sphere $FREESURFER_HOME/average/?h.average.curvature.filled.buckner40.t...
- OtherUsefulFlags . . . 1 match
- ...sphere ||
||<style="text-align:left">?h.smoothwm ||
||-[[surfreg]] ||?h.sphere ||[[mris_register]] -curv ?h.sphere $FREESURFER_HOME/average/?h.average.curvature.filled.buckner40.t...
- LongitudinalProcessing45 . . . 1 match
- ...Ipsilateral Surface Registation (Spherical Morph) (-surfreg) ===
Extra flags to [[mris_register]]:
{{{
-nosulc -norot <templateid>/surf/$hemi.sphere.reg
}}}
=== Jacobian (-jacob...
- LongitudinalProcessing . . . 1 match
- ...Ipsilateral Surface Registation (Spherical Morph) (-surfreg) ===
Extra flags to [[mris_register]]:
{{{
-nosulc -norot <templateid>/surf/$hemi.sphere.reg
}}}
=== Jacobian (-jacob...
- FreeSurferCommandsInterSubjectMorphing . . . 1 match
- ... * [[mris_sphere]]
* [[mris_register]]...
- FreeSurferCommands . . . 1 match
- ...]
* [[mris_fix_topology]]
* [[mris_make_surfaces]]
* [[mris_surf2vol]]
* [[mris_register]]
* [[mrisp_paint]]
* [[mris_ca_label]]
* [[mris_anatomical_stats]]
* [[mr...