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paint-sess -analysis [analysis] -contrast [contrast] -map [mapname] -offset [n] -sf [sessid] paint-sess -analysis analysisname -contrast contrastname -map mapname -offset n -sf sessid
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== Positional Arguments ==
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  -analysis analysisname : session-level functional analysis name

  -contrast contrastname : contrast name

  -sf sessidfile

For Group analysis:
  
-subject  subjectname  : name of subject on which to paint (with group data)

   -space spacename :
space from which to paint (native, tal, sph)

  
-isxavg method       : fixed or random (with group data)
=== General ===
||
-analysis analysisname||session-level functional analysis name||
||-contrast contrastname||contrast name||
||-sf sessid || ||
===
For Group Analysis ===
||
-subject subjectname || name of subject on which to paint (with group data) ||
|| -space spacename ||
space from which to paint (native, tal, sph)||
||
-isxavg method || fixed or random (with group data)||
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   -map mapname : <sig>, minsig, iminsig, t

   -offset n :
0-based image offset

   -spacedir spacedir : get data from spacedir

   -hemi hemisphere :
with sph space <lh rh>

   -surf surface :
surface on which to paint (white)

   
-umask umask  : set unix file permission mask

   
-scriptonly   : don't run, just generate a script

   
-version : print version and exit

  
-df srchdirfile ...

   -d srchdir ...
|| -map mapname || <sig>, minsig, iminsig, t||
|| -offset n ||
0-based image offset||
||-spacedir spacedir || get data from spacedir||
||-hemi hemisphere ||
with sph space <lh rh>||
|| -surf surface ||
surface on which to paint (white)||
||
-umask umask ||set unix file permission mask||
||
-scriptonly || do not run, just generate a script||
||
-version ||print version and exit||
||
-df srchdirfile ...|| ||
|| -d srchdir ...|| ||
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functional overlay [file with extension .w] || overlay.w || overlay file ||
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??
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None none

Navigation(children) Index TableOfContents

Name

paint-sess

Synopsis

paint-sess -analysis analysisname -contrast contrastname -map mapname -offset n -sf sessid

Arguments

Required Flagged Arguments

General

-analysis analysisname

session-level functional analysis name

-contrast contrastname

contrast name

-sf sessid

For Group Analysis

-subject subjectname

name of subject on which to paint (with group data)

-space spacename

space from which to paint (native, tal, sph)

-isxavg method

fixed or random (with group data)

Optional Flagged Arguments

-map mapname

<sig>, minsig, iminsig, t

-offset n

0-based image offset

-spacedir spacedir

get data from spacedir

-hemi hemisphere

with sph space <lh rh>

-surf surface

surface on which to paint (white)

-umask umask

set unix file permission mask

-scriptonly

do not run, just generate a script

-version

print version and exit

-df srchdirfile ...

-d srchdir ...

Outputs

overlay.w

overlay file

Description

??

Examples

Example 1

Bugs

none

See Also

Links

FreeSurfer, FsFast

Methods Description

References

Reporting Bugs

Report bugs to <analysis-bugs@nmr.mgh.harvard.edu>

Author/s

DougGreve

paint (last edited 2008-04-29 11:45:41 by localhost)