• recon-all-clinical

recon-all-clinical

This functionality is now available in the developer version of FreeSurfer.

Author: Karthik Gopinath

E-mail: kgopinath[at]mgh[dot]harvard[dot]edu

Please post your questions on this module to the FreeSurfer mailing list at freesurfer[at]nmr.mgh.harvard.edu rather than directly contacting the author.

If you use this package in your analysis, please cite:

Joint super-resolution and synthesis of 1 mm isotropic MP-RAGE volumes from clinical MRI exams with scans of different orientation, resolution and contrast. JE Iglesias, B Billot, Y Balbastre, A Tabari, J Conklin, RG Gonzalez, DC Alexander, P Golland, BL Edlow, B Fischl, for the ADNI. Neuroimage, 118206 (2021). * SynthSR: a public AI tool to turn heterogeneous clinical brain scans into high-resolution T1-weighted images for 3D morphometry. JE Iglesias, B Billot, Y Balbastre, C Magdamo, S Arnold, S Das, B Edlow, D Alexander, P Golland, B Fischl. Science Advances, 9(5), eadd3607 (2023). If you use the Hyperfine version, please cite this paper as well: *