Index TableOfContents
Name
roisummary-sess - outputs data from ["func2roi'] in ASCII format
Synopsis
roisummary-sess -sumfile (filename) -roidef (roidefname) -analysis (analysisname) -s (subjectname) or -sf (subjectfilename) -d (directory)
Arguments
Positional Arguments
none |
Required Flagged Arguments
-sumfile filename |
name of file in which to store the summary |
-roidef name |
name of ROI definition |
-analysis name |
source is averaged data from analysis |
-sf sessidfile ... |
|
-s sessid ... |
|
-df srchdirfile ... |
|
-d srchdir ... |
Optional Flagged Arguments
-transpose |
put sessid info on a row instead of a col |
-excludesessid |
do not include sess id in table |
Description
Often, one wants to pool all the ROI averages across sessions into a single table so that they can be read into a statistics package for more elaborate analysis. The results from {\bf func2roi-sess} can be collected into such a table using {\bf roisummary-sess}, which has the following options:
Use -sumfile to specify the name of the file in which to store the ascii results. The ROI is specified with {\em -roidef}. Without any other options, roisummary-sess will get the ROI results from each session and store them into the summary file. Each session will have its own column, and each row represents a different measurement according to the following scheme as outlined in Outputs.
Outputs
1. session id - text identifier of the session 2. 3. 4. 5. 6. 7. 8. 9. 10. 11. There will be nconditions times nestspercond numbers starting at this row. The first set of nestspercond numbers are the values for the first condition, the second set of nestspercond numbers are the values for the second condition, etc. Percent signal change can be obtained by dividing these numbers by offset and multiplying by 100. The format of this table can be modified slightly with the -transpose and excludesessid flags. The -transpose flag creates the same table except that the data for the session is placed on a row instead of in a column. The -excludesessid flag will eliminate the session id row from the data. The -excludesessid is provided because some software does not allow data tables with text and numbers.
command foo -i f -o out description
command foo -i f -o out -f fvalue description
None
["othercommand1"], ["othercommand2"]
["References/Lastname###"]
Report bugs to <analysis-bugs@nmr.mgh.harvard.edu>
Examples
Example 1
Example 2
Bugs
See Also
Links
Methods Description
description
description
References
Reporting Bugs
Author/s