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Name
scuba - volume and surface visualizer and editor
Synopsis
scuba [OPTION]...
Optional Flagged Arguments
-h, --help |
Display usage information and exit. |
-s, --subject SUBJECT |
Set the subject for this session. Environment variable SUBJECTS_DIR should be set. |
-v, --volume FILE |
Load a volume file. Can be a file name or a subdir in the subject's directory specified with -s. |
-f, --surface FILE |
Load a surface file. Can be a file name or a subdir in the subject's directory specified with -s. |
-t, --transform FILE |
Load a transform file. Can be a file name or a file in the subject's mri/transforms directory specified with -s. |
Description
scuba is a unified viewer for the FreeSurfer package. It replaces tkmedit and tksurfer. It displays volumes and surfaces in a common coordinate space and allows the user to apply various viewing parameters and transforms.
Example 1
scuba -s bert -v T1
Specify bert as the main subject and load bert's T1 volume. This mimics the tkmedit style of 'tkmedit subject volume'.
Example 2
scuba -v $SUBJECTS_DIR/bert/mri/T1
This does the same thing but specifies the volume explicitly.
Example 3
scuba -s bert -v T1 -f lh.white
This also loads a surface.
Example 4
scuba -v $SUBJECTS_DIR/bert/mri/T1 -f $SUBJECTS_DIR/bert/surf/lh.white
This does the same but specifies the files explicitly.
See Also
Links
FreeSurfer, ["Scuba"]
Reporting Bugs
Report bugs to <analysis-bugs@nmr.mgh.harvard.edu>