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| spmregister-sess | spmregister-sess - ?? |
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| command argA argB -flag1 arg1 -flag2 arg2 [-flag3 arg3] [-flag4 arg4] | spmregister-sess ?? |
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== Positional Arguments == || argA || brief description || detailed description (eg, help file information) || || argB || brief description || detailed description (eg, help file information) || |
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|| -flag1 arg1 || brief description || detailed description (eg, help file information) || || -flag2 arg2 || brief description || detailed description (eg, help file information) || |
|| -sf <sessidfile> ||...|| || -df <srchdirfile>|| ...|| || -s <sessid> ||...|| || -d <srchdir> || ...|| || -fsd <dir> || functional subdirectory (bold)|| || -run <RRR> || register to run RRR|| || -fsvol <volid> || FreeSurfer vol id (default is brain)|| || -regfile <file> || Save reg as file instead of register.dat|| || -umask <umask> || set unix file permission mask|| || -version || print version and exit|| |
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|| -flag3 arg3 || brief description ||detailed description (eg, help file information) || || -flag4 arg4 || brief description ||detailed description (eg, help file information) || |
?? |
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|| volume1 || description || || volume2 || description || |
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command foo -i f -o out description |
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command foo -i f -o out -f fvalue description |
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description description |
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Index TableOfContents
Name
spmregister-sess - ??
Synopsis
spmregister-sess ??
Arguments
Required Flagged Arguments
-sf <sessidfile> |
... |
-df <srchdirfile> |
... |
-s <sessid> |
... |
-d <srchdir> |
... |
-fsd <dir> |
functional subdirectory (bold) |
-run <RRR> |
register to run RRR |
-fsvol <volid> |
FreeSurfer vol id (default is brain) |
-regfile <file> |
Save reg as file instead of register.dat |
-umask <umask> |
set unix file permission mask |
-version |
print version and exit |
Optional Flagged Arguments
??
Outputs
<??> |
?? |
Description
spmregister-sess works in two stages. It registers the FreeSurfer anat to a T1 template and then registers the func to a T2* template, then concatenates the registrations. This has the advantage of not requiring a same-session anatomical.
Examples
Example 1
??
Example 2
??
Bugs
??
See Also
["othercommand1"], ["othercommand2"]
Links
Methods Description
??
References
["References/Lastname###"]
Reporting Bugs
Report bugs to <analysis-bugs@nmr.mgh.harvard.edu>