mri_pretess
mri_pretess [options] filledvol labelstring normvol newfilledvol
Changes white matter (WM) segmentation so that the neighbors of all voxels labeled as WM have a face in common - no edges or corners allowed.
| Argument | Explanation |
|---|---|
| filledvol | usually wm.mgz |
| labelstring | usually wm |
| normvol | usually norm.mgz |
| newfilledvol | usually wm.mgz |
| Argument | Explanation |
|---|---|
| -debug_voxel C R S | |
| -nocorners | no removal of corner configurations in addition to edge ones |
| -w | turn on diagnostic writing |
| -keep | keep WM edits |
| -test | adds a voxel that should be removed by mri_pretess. The value of the voxel is set to that of an ON-edited WM, so it should be kept with -keep. The output will NOT be saved. |
Report bugs to <freesurfer@nmr.mgh.harvard.edu>