NAME

talairach_afd

SYNOPSIS

talairach_afd -subj <subject_name> [-T <p-value threshold>] or talairach_afd -xfm <xfm_fname> [-T <p-value threshold>]

DESCRIPTION

This program detects Talairach alignment failures.

POSITIONAL ARGUMENTS

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REQUIRED-FLAGGED ARGUMENTS

Only one of the following is required.

ArgumentExplanation
-subj %sspecify subject's name
-xfm %sspecify the talairach.xfm file to check

OPTIONAL-FLAGGED ARGUMENTS

ArgumentExplanation
-T #threshold the p-values at #Talairach transforms for subjects with p-values <= T are considered as very unlikely default=0.010
-afd %sspecify directory containing .afd data files
-Vverbose

REPORTING

Report bugs to <freesurfer@nmr.mgh.harvard.edu>