NAME

talairach_avi

SYNOPSIS

******************************************************************

DESCRIPTION

Front-end for Avi Snyders image registration tool. Computes the talairach transform that maps the input volume to the MNI average_305. This does not add the xfm to the header of the input file. When called by recon-all, the xfm is added to the header after the transform is computed.

POSITIONAL ARGUMENTS

*******************************************************************

REQUIRED-FLAGGED ARGUMENTS

ArgumentExplanation
--i involinput volume
--xfm outxfmoutput xfm file

OPTIONAL-FLAGGED ARGUMENTS

ArgumentExplanation
--atlasalternate target atlas (in freesurfer/average dir)
--loglog file. default is outdir/talairach_avi.log
--helpprint help and exit
--debugturn on debugging
--versionprint version and exit

REPORTING

Report bugs to <freesurfer@nmr.mgh.harvard.edu>

SEE-ALSO

mri_add_xform_to_header