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FreeSurfer Slides

  1. Introduction to Freesurfer - Bruce Fischl

  2. Anatomical Analysis with Freesurfer - Doug Greve

  3. Surface-based Group Analysis - Doug Greve

  4. Applying FreeSurfer Tools to FSL fMRI Analysis - Doug Greve

FreeSurfer Tutorial

Overview

The FreeSurfer tools deal with two main types of data: volumetric data (volumes of voxels) and surface data (polygons that tile a surface). This tutorial should familiarize you with FreeSurfer's volume and surface processing streams, the recommended workflow to execute these, and many of their component tools. The tutorial also describes some of FreeSurfer's tools for registering volumetric datasets, performing group analysis on morphology data, and integrating FSL Feat output with FreeSurfer (overlaying color coded parametric maps onto the cortical surface and visualizing plotted results). After completing the tutorial, you should be able to:

Course Outline

In the following sessions, you will be shown a variety of command strings. Only those that appear between lines should be copy-and-pasted into the terminal for this tutorial. Those commands appear like this:


command arg1 arg2


Additional


2008-06-01 20:47