FreeSurfer Tutorial
Table of Contents
Section |
Page |
Overview and course outline |
3 |
Inspection of Freesurfer output |
5 |
Troubleshooting your output |
22 |
Fixing a bad skull strip |
26 |
Making edits to the white matter |
34 |
Correcting pial surfaces |
46 |
Using control points to fix intensity normalization |
50 |
Talairach registration |
55 |
recon-all: morphometry and reconstruction |
69 |
recon-all: process flow table |
97 |
QDEC Group analysis |
100 |
Group analysis: average subject, design matrix, mri_glmfit |
125 |
Group analysis: visualization and inspection |
149 |
Integrating FreeSurfer and FSL's FEAT |
159 |
Exercise overview |
172 |
Tkmedit reference |
176 |
Tksurfer reference |
211 |
Glossary |
227 |
References |
229 |
Acknowledgments |
238 |