mris_fix_topology
mris_fix_topology [options] <subject name> <hemisphere>
This program computes a mapping from the unit sphere onto the surface of the cortex from a previously generated approximation of the cortical surface, thus guaranteeing a topologically correct surface.
| Argument | Explanation |
|---|---|
| <subject name> | subject name |
| <hemisphere> | hemisphere |
| Argument | Explanation |
|---|---|
| -orig origname | |
| -sphere spherename | |
| -inflated inflatedname | |
| -wi | write fixed inflated |
| -verbose | |
| -verbose_low | |
| -warnings | |
| -errors | |
| -movies | |
| -intersect | check if the final surface self-intersects |
| -mappings | generate several different mappings |
| -correct_defect N | correct defect N only |
| -niters N | stop genetic algorithm after N iterations |
| -genetic | use genetic search |
| -ga | optimize genetic search |
| -optimize | optimize genetic search |
| -random N | use random search with N iterations |
| -seed N | set random number generator to seed N |
| -diag | sets DIAG_SAVE_DIAGS |
| -mgz | assume volumes are in mgz format |
| -s N | smooth corrected surface by N iterations |
| -v D | set diagnostic level to D |
| -help | print help and exit |
| -version | print version and exit |
Report bugs to <freesurfer@nmr.mgh.harvard.edu>