Wed Apr 24 20:41:20 EDT 2013 /autofs/homes/010/ayendiki /usr/local/freesurfer/dev/bin/trac-all -prep -c tract/dmrirc.tutorial Subject elmo.2005 SUBJECTS_DIR /space/freesurfer/subjects/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/dev Actual FREESURFER_HOME /autofs/cluster/freesurfer/centos6_x86_64/dev build-stamp.txt: freesurfer-Linux-centos6_x86_64-dev-20130423 ayendiki launchpad Linux launchpad 2.6.32-279.22.1.el6.x86_64 #1 SMP Wed Feb 6 03:10:46 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize unlimited coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 8192 memorylocked 64 kbytes maxproc 256703 total used free shared buffers cached Mem: 32877832 14627192 18250640 0 619880 9095468 -/+ buffers/cache: 4911844 27965988 Swap: 67108848 22796 67086052 ######################################## Program versions: $Id: trac-all,v 1.47 2013/02/23 01:59:42 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2013/04/25-00:41:21-GMT BuildTimeStamp: Apr 23 2013 20:04:55 CVS: $Id: mri_convert.c,v 1.203 2012/12/06 21:44:17 greve Exp $ User: ayendiki Machine: launchpad Platform: Linux PlatformVersion: 2.6.32-279.22.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 FLIRT version 5.5 $Id: bbregister,v 1.56 2013/03/25 18:04:29 greve Exp $ $Id: mri_cvs_register,v 1.45 2013/02/07 22:48:48 lzollei Exp $ ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2013/04/25-00:41:22-GMT BuildTimeStamp: Apr 23 2013 20:04:55 CVS: User: ayendiki Machine: launchpad Platform: Linux PlatformVersion: 2.6.32-279.22.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2013/04/25-00:41:23-GMT BuildTimeStamp: Apr 23 2013 20:04:55 CVS: User: ayendiki Machine: launchpad Platform: Linux PlatformVersion: 2.6.32-279.22.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2013/04/25-00:41:24-GMT BuildTimeStamp: Apr 23 2013 20:04:55 CVS: User: ayendiki Machine: launchpad Platform: Linux PlatformVersion: 2.6.32-279.22.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2013/04/25-00:41:24-GMT BuildTimeStamp: Apr 23 2013 20:04:55 CVS: User: ayendiki Machine: launchpad Platform: Linux PlatformVersion: 2.6.32-279.22.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 New invocation of trac-preproc ayendiki compute-0-3 Linux compute-0-3 2.6.32-279.22.1.el6.x86_64 #1 SMP Wed Feb 6 03:10:46 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 10240 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse 7340032 kbytes descriptors 32768 memorylocked 64 kbytes maxproc 256703 total used free shared buffers cached Mem: 32877836 5772276 27105560 0 183812 1096388 -/+ buffers/cache: 4492076 28385760 Swap: 67108856 91260 67017596 #------------------------------------- /usr/local/freesurfer/dev/bin/trac-preproc #------------------------------------- #@# Image corrections Wed Apr 24 20:41:35 EDT 2013 mri_convert /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/orig/656000-11-1.dcm /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_orig.nii.gz mri_convert /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/orig/656000-11-1.dcm /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_orig.nii.gz $Id: mri_convert.c,v 1.203 2012/12/06 21:44:17 greve Exp $ reading from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/orig/656000-11-1.dcm... Getting Series No INFO: Found 1915 files in /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/orig INFO: Scanning for Series Number 11 Scanning Directory INFO: found 70 files in series INFO: loading series header info. RunNo = 10 WARNING: Run 1 appears to be truncated Files Found: 70, Files Expected (lRep+1): 120 FileName /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/orig/656000-11-1.dcm Identification NumarisVer syngo MR 2004A 4VA25A ScannerModel Trio PatientName Trio_calib_002_run2 Date and time StudyDate 20050905 StudyTime 100821.656000 SeriesTime 104226.748000 AcqTime 104209.522496 Acquisition parameters PulseSeq ep_b0#0 Protocol DIFFUSION_HighRes PhEncDir COL EchoNo 0 FlipAngle 90 EchoTime 100 InversionTime -1 RepetitionTime 10100 PhEncFOV 256 ReadoutFOV 256 Image information RunNo 10 SeriesNo 11 ImageNo 1 NImageRows 1024 NImageCols 1024 NFrames 70 SliceArraylSize 60 IsMosaic 1 ImgPos 1048.1801 1002.6923 -265.4914 VolRes 2.0000 2.0000 2.0000 VolDim 128 128 60 Vc -0.9997 0.0244 0.0005 Vr -0.0238 -0.9764 0.2147 Vs 0.0057 0.2147 0.9767 VolCenter 0.0000 0.0000 0.0000 TransferSyntaxUID unknown INFO: sorting. INFO: (128 128 60), nframes = 70, ismosaic=1 Numaris Version: syngo MR 2004A 4VA25A Maj = 4, Min=2, MinMin = 5 Repetition Time = 10100, TR = 10100 ms PE Dir COL COL AutoAlign matrix detected AutoAlign Matrix --------------------- 1.000 0.024 -0.006 -0.495; -0.024 0.976 -0.215 -40.555; 0.000 0.215 0.977 12.503; 0.000 0.000 0.000 1.000; This looks like an MGH DTI volume MGH DTI SeqPack Info 0 ep_b0#0 0.000000 0 1 ep_b0#1 0.000000 1 2 ep_b0#2 0.000000 2 3 ep_b0#3 0.000000 3 4 ep_b0#4 0.000000 4 5 ep_b0#5 0.000000 5 6 ep_b0#6 0.000000 6 7 ep_b0#7 0.000000 7 8 ep_b0#8 0.000000 8 9 ep_b0#9 0.000000 9 10 ep_b700#0 700.000000 0 11 ep_b700#1 700.000000 1 12 ep_b700#2 700.000000 2 13 ep_b700#3 700.000000 3 14 ep_b700#4 700.000000 4 15 ep_b700#5 700.000000 5 16 ep_b700#6 700.000000 6 17 ep_b700#7 700.000000 7 18 ep_b700#8 700.000000 8 19 ep_b700#9 700.000000 9 20 ep_b700#10 700.000000 10 21 ep_b700#11 700.000000 11 22 ep_b700#12 700.000000 12 23 ep_b700#13 700.000000 13 24 ep_b700#14 700.000000 14 25 ep_b700#15 700.000000 15 26 ep_b700#16 700.000000 16 27 ep_b700#17 700.000000 17 28 ep_b700#18 700.000000 18 29 ep_b700#19 700.000000 19 30 ep_b700#20 700.000000 20 31 ep_b700#21 700.000000 21 32 ep_b700#22 700.000000 22 33 ep_b700#23 700.000000 23 34 ep_b700#24 700.000000 24 35 ep_b700#25 700.000000 25 36 ep_b700#26 700.000000 26 37 ep_b700#27 700.000000 27 38 ep_b700#28 700.000000 28 39 ep_b700#29 700.000000 29 40 ep_b700#30 700.000000 30 41 ep_b700#31 700.000000 31 42 ep_b700#32 700.000000 32 43 ep_b700#33 700.000000 33 44 ep_b700#34 700.000000 34 45 ep_b700#35 700.000000 35 46 ep_b700#36 700.000000 36 47 ep_b700#37 700.000000 37 48 ep_b700#38 700.000000 38 49 ep_b700#39 700.000000 39 50 ep_b700#40 700.000000 40 51 ep_b700#41 700.000000 41 52 ep_b700#42 700.000000 42 53 ep_b700#43 700.000000 43 54 ep_b700#44 700.000000 44 55 ep_b700#45 700.000000 45 56 ep_b700#46 700.000000 46 57 ep_b700#47 700.000000 47 58 ep_b700#48 700.000000 48 59 ep_b700#49 700.000000 49 60 ep_b700#50 700.000000 50 61 ep_b700#51 700.000000 51 62 ep_b700#52 700.000000 52 63 ep_b700#53 700.000000 53 64 ep_b700#54 700.000000 54 65 ep_b700#55 700.000000 55 66 ep_b700#56 700.000000 56 67 ep_b700#57 700.000000 57 68 ep_b700#58 700.000000 58 69 ep_b700#59 700.000000 59 bValue = 700 nB0 = 10 nDir = 60 GradFile /usr/local/freesurfer/dev/diffusion/mgh-dti-seqpack/gradient_mgh_dti60.gdt FileName /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/orig/656000-11-4141.dcm Identification NumarisVer syngo MR 2004A 4VA25A ScannerModel Trio PatientName Trio_calib_002_run2 Date and time StudyDate 20050905 StudyTime 100821.656000 SeriesTime 104226.748000 AcqTime 104350.522512 Acquisition parameters PulseSeq ep_b700#59 Protocol DIFFUSION_HighRes PhEncDir COL EchoNo 0 FlipAngle 90 EchoTime 100 InversionTime -1 RepetitionTime 10100 PhEncFOV 256 ReadoutFOV 256 Image information RunNo 10 SeriesNo 11 ImageNo 4141 NImageRows 1024 NImageCols 1024 NFrames 70 SliceArraylSize 60 IsMosaic 1 ImgPos 1048.1801 1002.6923 -265.4914 VolRes 2.0000 2.0000 2.0000 VolDim 128 128 60 Vc -0.9997 0.0244 0.0005 Vr -0.0238 -0.9764 0.2147 Vs 0.0057 0.2147 0.9767 VolCenter 0.0000 0.0000 0.0000 TransferSyntaxUID unknown UseSliceScaleFactor 0 (slice 0: 1) sagrev = 1, correv =1, trarev = 0 Vs = 0.0057 0.214665 0.976671 INFO: no Siemens slice order reversal detected (good!). TR=10100.00, TE=100.00, TI=-1.00, flip angle=90.00 i_ras = (-0.999702, 0.0244268, 0.000465598) j_ras = (-0.023757, -0.976382, 0.21474) k_ras = (0.0057, 0.214665, 0.976671) writing to /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_orig.nii.gz... Saving bvals and bvecs mri_probedicom --i /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/orig/656000-11-1.dcm > /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dcminfo.dat flip4fsl /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_orig.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_orig_flip.nii.gz INFO: input image orientation is LPS INFO: input image determinant is 8 fslswapdim /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_orig.nii.gz x -y z /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_orig_flip.nii.gz INFO: left-right orientation was flipped by fslswapdim fslorient -forceradiological /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_orig_flip.nii.gz INFO: found /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_orig.mghdti.bvals, converting to FSL format INFO: found /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_orig.mghdti.bvecs, converting to FSL format mv -f /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_orig_flip.mghdti.bvecs /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/bvecs mv -f /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_orig_flip.mghdti.bvals /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/bvals eddy_correct /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_orig_flip.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi.nii.gz 0 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_tmp0000 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_tmp0001 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_tmp0002 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_tmp0003 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_tmp0004 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_tmp0005 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_tmp0006 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_tmp0007 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_tmp0008 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_tmp0009 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_tmp0010 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_tmp0011 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_tmp0012 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_tmp0013 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_tmp0014 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_tmp0015 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_tmp0016 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_tmp0017 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_tmp0018 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_tmp0019 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_tmp0020 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_tmp0021 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_tmp0022 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_tmp0023 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_tmp0024 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_tmp0025 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_tmp0026 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_tmp0027 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_tmp0028 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_tmp0029 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_tmp0030 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_tmp0031 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_tmp0032 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_tmp0033 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_tmp0034 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_tmp0035 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_tmp0036 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_tmp0037 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_tmp0038 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_tmp0039 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_tmp0040 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_tmp0041 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_tmp0042 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_tmp0043 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_tmp0044 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_tmp0045 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_tmp0046 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_tmp0047 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_tmp0048 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_tmp0049 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_tmp0050 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_tmp0051 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_tmp0052 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_tmp0053 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_tmp0054 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_tmp0055 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_tmp0056 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_tmp0057 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_tmp0058 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_tmp0059 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_tmp0060 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_tmp0061 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_tmp0062 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_tmp0063 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_tmp0064 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_tmp0065 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_tmp0066 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_tmp0067 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_tmp0068 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_tmp0069 mv -f /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/bvecs /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/bvecs.norot xfmrot /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi.ecclog /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/bvecs.norot /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/bvecs ln -sf /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/data.nii.gz mri_convert --frame 0 /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_frame0.nii.gz mri_convert --frame 0 /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_frame0.nii.gz $Id: mri_convert.c,v 1.203 2012/12/06 21:44:17 greve Exp $ reading from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi.nii.gz... TR=1000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999701, 0.0244268, 0.000465598) j_ras = (0.023757, 0.976382, -0.21474) k_ras = (0.0057, 0.214665, 0.976671) keeping frame 0 writing to /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_frame0.nii.gz... mri_convert --frame 1 /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_frame1.nii.gz mri_convert --frame 1 /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_frame1.nii.gz $Id: mri_convert.c,v 1.203 2012/12/06 21:44:17 greve Exp $ reading from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi.nii.gz... TR=1000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999701, 0.0244268, 0.000465598) j_ras = (0.023757, 0.976382, -0.21474) k_ras = (0.0057, 0.214665, 0.976671) keeping frame 1 writing to /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_frame1.nii.gz... mri_convert --frame 2 /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_frame2.nii.gz mri_convert --frame 2 /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_frame2.nii.gz $Id: mri_convert.c,v 1.203 2012/12/06 21:44:17 greve Exp $ reading from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi.nii.gz... TR=1000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999701, 0.0244268, 0.000465598) j_ras = (0.023757, 0.976382, -0.21474) k_ras = (0.0057, 0.214665, 0.976671) keeping frame 2 writing to /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_frame2.nii.gz... mri_convert --frame 3 /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_frame3.nii.gz mri_convert --frame 3 /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_frame3.nii.gz $Id: mri_convert.c,v 1.203 2012/12/06 21:44:17 greve Exp $ reading from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi.nii.gz... TR=1000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999701, 0.0244268, 0.000465598) j_ras = (0.023757, 0.976382, -0.21474) k_ras = (0.0057, 0.214665, 0.976671) keeping frame 3 writing to /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_frame3.nii.gz... mri_convert --frame 4 /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_frame4.nii.gz mri_convert --frame 4 /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_frame4.nii.gz $Id: mri_convert.c,v 1.203 2012/12/06 21:44:17 greve Exp $ reading from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi.nii.gz... TR=1000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999701, 0.0244268, 0.000465598) j_ras = (0.023757, 0.976382, -0.21474) k_ras = (0.0057, 0.214665, 0.976671) keeping frame 4 writing to /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_frame4.nii.gz... mri_convert --frame 5 /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_frame5.nii.gz mri_convert --frame 5 /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_frame5.nii.gz $Id: mri_convert.c,v 1.203 2012/12/06 21:44:17 greve Exp $ reading from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi.nii.gz... TR=1000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999701, 0.0244268, 0.000465598) j_ras = (0.023757, 0.976382, -0.21474) k_ras = (0.0057, 0.214665, 0.976671) keeping frame 5 writing to /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_frame5.nii.gz... mri_convert --frame 6 /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_frame6.nii.gz mri_convert --frame 6 /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_frame6.nii.gz $Id: mri_convert.c,v 1.203 2012/12/06 21:44:17 greve Exp $ reading from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi.nii.gz... TR=1000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999701, 0.0244268, 0.000465598) j_ras = (0.023757, 0.976382, -0.21474) k_ras = (0.0057, 0.214665, 0.976671) keeping frame 6 writing to /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_frame6.nii.gz... mri_convert --frame 7 /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_frame7.nii.gz mri_convert --frame 7 /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_frame7.nii.gz $Id: mri_convert.c,v 1.203 2012/12/06 21:44:17 greve Exp $ reading from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi.nii.gz... TR=1000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999701, 0.0244268, 0.000465598) j_ras = (0.023757, 0.976382, -0.21474) k_ras = (0.0057, 0.214665, 0.976671) keeping frame 7 writing to /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_frame7.nii.gz... mri_convert --frame 8 /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_frame8.nii.gz mri_convert --frame 8 /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_frame8.nii.gz $Id: mri_convert.c,v 1.203 2012/12/06 21:44:17 greve Exp $ reading from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi.nii.gz... TR=1000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999701, 0.0244268, 0.000465598) j_ras = (0.023757, 0.976382, -0.21474) k_ras = (0.0057, 0.214665, 0.976671) keeping frame 8 writing to /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_frame8.nii.gz... mri_convert --frame 9 /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_frame9.nii.gz mri_convert --frame 9 /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_frame9.nii.gz $Id: mri_convert.c,v 1.203 2012/12/06 21:44:17 greve Exp $ reading from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi.nii.gz... TR=1000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999701, 0.0244268, 0.000465598) j_ras = (0.023757, 0.976382, -0.21474) k_ras = (0.0057, 0.214665, 0.976671) keeping frame 9 writing to /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_frame9.nii.gz... mri_concat --i /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_frame0.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_frame1.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_frame2.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_frame3.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_frame4.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_frame5.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_frame6.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_frame7.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_frame8.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_frame9.nii.gz --mean --o /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/lowb.nii.gz ninputs = 10 Checking inputs nframestot = 10 Allocing output Done allocing nframes = 10 Computing mean across frames Writing to /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/lowb.nii.gz bet /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/lowb.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/lowb_brain.nii.gz -m -f 0.3 mv -f /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/lowb_brain_mask.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff #------------------------------------- #@# Intra-subject registration Wed Apr 24 21:18:50 EDT 2013 mri_convert /space/freesurfer/subjects/diffusion_recons/elmo.2005/mri/brain.mgz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/brain_anat_orig.nii.gz mri_convert /space/freesurfer/subjects/diffusion_recons/elmo.2005/mri/brain.mgz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/brain_anat_orig.nii.gz $Id: mri_convert.c,v 1.203 2012/12/06 21:44:17 greve Exp $ reading from /space/freesurfer/subjects/diffusion_recons/elmo.2005/mri/brain.mgz... TR=2530.00, TE=3.45, TI=1100.00, flip angle=7.00 i_ras = (-1, 6.33299e-08, -2.04891e-08) j_ras = (-9.31323e-09, 2.32831e-10, -1) k_ras = (7.07805e-08, 1, 1.74623e-09) writing to /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/brain_anat_orig.nii.gz... flip4fsl /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/brain_anat_orig.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/brain_anat.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/brain_anat_orig.nii.gz x z -y /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/brain_anat.nii.gz fslorient -forceradiological /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/brain_anat.nii.gz tkregister2 --mov /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/brain_anat_orig.nii.gz --targ /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/brain_anat.nii.gz --regheader --noedit --fslregout /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/anatorig2anat.mat --reg /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/anat2anatorig.dat tkregister_tcl /usr/local/freesurfer/dev/tktools/tkregister2.tcl target volume /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/brain_anat.nii.gz movable volume /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/brain_anat_orig.nii.gz reg file /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/anat2anatorig.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.126 2012/01/20 21:00:37 greve Exp $ Diagnostic Level -1 INFO: loading target /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/brain_anat.nii.gz INFO: target does not conform to COR format, so I'm going to reslice to COR. This will not affect the final registration. Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/brain_anat_orig.nii.gz Tmov: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; mkheaderreg = 1, float2int = 0 Computing reg from header (and possibly input matrix) ---- Input registration matrix (computed) -------- 1.000 -0.000 -0.000 -0.000; 0.000 1.000 0.000 0.000; -0.000 -0.000 1.000 1.000; 0.000 0.000 0.000 1.000; --------------------------------------- ---- Input registration matrix -------- 1.000 -0.000 -0.000 -0.000; 0.000 1.000 0.000 0.000; -0.000 -0.000 1.000 1.000; 0.000 0.000 0.000 1.000; Determinant 1 subject = subject-unknown RegMat --------------------------- 1.000 0.000 0.000 -0.000; 0.000 0.000 -1.000 0.000; 0.000 1.000 0.000 1.000; 0.000 0.000 0.000 1.000; FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -1, ref det = -1 convert_xfm -omat /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/anat2anatorig.mat -inverse /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/anatorig2anat.mat Log file is /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/anatorig2diff.bbr.dat.log Wed Apr 24 21:19:18 EDT 2013 setenv SUBJECTS_DIR /space/freesurfer/subjects/diffusion_recons cd /homes/10/ayendiki /usr/local/freesurfer/dev/bin/bbregister --s elmo.2005 --init-fsl --dti --mov /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi.nii.gz --reg /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/anatorig2diff.bbr.dat --fslmat /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/diff2anatorig.bbr.mat $Id: bbregister,v 1.56 2013/03/25 18:04:29 greve Exp $ Linux compute-0-3 2.6.32-279.22.1.el6.x86_64 #1 SMP Wed Feb 6 03:10:46 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux FREESURFER_HOME /usr/local/freesurfer/dev mri_convert /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/tmp.bbregister.11542/template.nii mri_convert /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/tmp.bbregister.11542/template.nii $Id: mri_convert.c,v 1.203 2012/12/06 21:44:17 greve Exp $ reading from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi.nii.gz... TR=1000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999701, 0.0244268, 0.000465598) j_ras = (0.023757, 0.976382, -0.21474) k_ras = (0.0057, 0.214665, 0.976671) writing to /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/tmp.bbregister.11542/template.nii... fslregister --s elmo.2005 --mov /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/tmp.bbregister.11542/template.nii --reg /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/tmp.bbregister.11542/reg.init.dat --niters 1 --maxangle 90 --tmp /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/tmp.bbregister.11542/fslregister --dof 6 --fsvol brainmask.mgz --nobetmov Log file is /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/tmp.bbregister.11542/reg.init.dat.fslregister.log Wed Apr 24 21:19:53 EDT 2013 --s elmo.2005 --mov /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/tmp.bbregister.11542/template.nii --reg /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/tmp.bbregister.11542/reg.init.dat --niters 1 --maxangle 90 --tmp /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/tmp.bbregister.11542/fslregister --dof 6 --fsvol brainmask.mgz --nobetmov $Id: fslregister,v 1.36 2012/11/08 16:18:43 greve Exp $ compute-0-3 Linux compute-0-3 2.6.32-279.22.1.el6.x86_64 #1 SMP Wed Feb 6 03:10:46 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux nIters 1 -------------------------------------- /homes/10/ayendiki mri_convert /space/freesurfer/subjects/diffusion_recons/elmo.2005/mri/brainmask.mgz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/tmp.bbregister.11542/fslregister/refvol.fslregister.nii mri_convert /space/freesurfer/subjects/diffusion_recons/elmo.2005/mri/brainmask.mgz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/tmp.bbregister.11542/fslregister/refvol.fslregister.nii $Id: mri_convert.c,v 1.203 2012/12/06 21:44:17 greve Exp $ reading from /space/freesurfer/subjects/diffusion_recons/elmo.2005/mri/brainmask.mgz... TR=2530.00, TE=3.45, TI=1100.00, flip angle=7.00 i_ras = (-1, 6.33299e-08, -2.04891e-08) j_ras = (-9.31323e-09, 2.32831e-10, -1) k_ras = (7.07805e-08, 1, 1.74623e-09) writing to /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/tmp.bbregister.11542/fslregister/refvol.fslregister.nii... -------------------------------------- /homes/10/ayendiki mri_convert /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/tmp.bbregister.11542/template.nii /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/tmp.bbregister.11542/fslregister/movvol.fslregister.nii --frame 0 mri_convert /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/tmp.bbregister.11542/template.nii /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/tmp.bbregister.11542/fslregister/movvol.fslregister.nii --frame 0 $Id: mri_convert.c,v 1.203 2012/12/06 21:44:17 greve Exp $ reading from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/tmp.bbregister.11542/template.nii... TR=1000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999701, 0.0244268, 0.000465598) j_ras = (0.023757, 0.976382, -0.21474) k_ras = (0.0057, 0.214665, 0.976671) keeping frame 0 writing to /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/tmp.bbregister.11542/fslregister/movvol.fslregister.nii... Mov determinant is -8 /homes/10/ayendiki tkregister2_cmdl --mov /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/tmp.bbregister.11542/fslregister/movvol.fslregister.nii --reg /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/tmp.bbregister.11542/fslregister/reg0.11859.dat --regheader --fslregout /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/tmp.bbregister.11542/reg.init.dat.fsl.mat0 --s elmo.2005 --noedit tkregister_tcl /usr/local/freesurfer/dev/tktools/tkregister2.tcl INFO: no target volume specified, assuming FreeSurfer orig volume. target volume orig movable volume /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/tmp.bbregister.11542/fslregister/movvol.fslregister.nii reg file /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/tmp.bbregister.11542/fslregister/reg0.11859.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.126 2012/01/20 21:00:37 greve Exp $ Diagnostic Level -1 INFO: loading target /space/freesurfer/subjects/diffusion_recons/elmo.2005/mri/orig.mgz Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/tmp.bbregister.11542/fslregister/movvol.fslregister.nii Tmov: -------------------- -2.000 0.000 0.000 128.000; 0.000 0.000 2.000 -60.000; 0.000 -2.000 0.000 128.000; 0.000 0.000 0.000 1.000; mkheaderreg = 1, float2int = 0 Computing reg from header (and possibly input matrix) ---- Input registration matrix (computed) -------- 1.000 -0.024 -0.000 3.118; 0.006 0.215 0.977 2.259; -0.024 -0.976 0.215 -1.164; 0.000 0.000 0.000 1.000; --------------------------------------- ---- Input registration matrix -------- 1.000 -0.024 -0.000 3.118; 0.006 0.215 0.977 2.259; -0.024 -0.976 0.215 -1.164; 0.000 0.000 0.000 1.000; Determinant 1 subject = elmo.2005 RegMat --------------------------- 1.000 -0.024 -0.000 3.118; 0.006 0.215 0.977 2.259; -0.024 -0.976 0.215 -1.164; 0.000 0.000 0.000 1.000; FSLOUTPUTTYPE NIFTI tkreg2FSL: mov det = -8, ref det = -1 Wed Apr 24 21:20:20 EDT 2013 /homes/10/ayendiki flirt.fsl -ref /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/tmp.bbregister.11542/fslregister/refvol.fslregister.nii -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/tmp.bbregister.11542/fslregister/movvol.fslregister.nii -bins 256 -cost corratio -dof 6 -searchrx -90 90 -searchry -90 90 -searchrz -90 90 -verbose 0 -omat /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/tmp.bbregister.11542/fslregister/fslmat0.trans.mat -schedule /usr/pubsw/packages/fsl/current/etc/flirtsch/xyztrans.sch -init /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/tmp.bbregister.11542/reg.init.dat.fsl.mat0 Wed Apr 24 21:20:40 EDT 2013 /homes/10/ayendiki flirt.fsl -ref /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/tmp.bbregister.11542/fslregister/refvol.fslregister.nii -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/tmp.bbregister.11542/fslregister/movvol.fslregister.nii -bins 256 -cost corratio -dof 6 -searchrx -90 90 -searchry -90 90 -searchrz -90 90 -verbose 0 -omat /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/tmp.bbregister.11542/reg.init.dat.fsl.mat -init /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/tmp.bbregister.11542/fslregister/fslmat0.trans.mat -schedule /usr/local/freesurfer/dev/bin/flirt.newdefault.20080811.sch tkregister2_cmdl --s elmo.2005 --mov /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/tmp.bbregister.11542/template.nii --reg /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/tmp.bbregister.11542/reg.init.dat --fslreg /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/tmp.bbregister.11542/reg.init.dat.fsl.mat --noedit tkregister_tcl /usr/local/freesurfer/dev/tktools/tkregister2.tcl ---- FSL registration matrix -------- 0.999 -0.041 0.002 8.031; 0.011 0.235 -0.972 154.415; 0.039 0.971 0.235 -17.038; 0.000 0.000 0.000 1.000; --------------------------------------- INFO: no target volume specified, assuming FreeSurfer orig volume. target volume orig movable volume /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/tmp.bbregister.11542/template.nii reg file /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/tmp.bbregister.11542/reg.init.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.126 2012/01/20 21:00:37 greve Exp $ Diagnostic Level -1 INFO: loading target /space/freesurfer/subjects/diffusion_recons/elmo.2005/mri/orig.mgz Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/tmp.bbregister.11542/template.nii Tmov: -------------------- -2.000 0.000 0.000 128.000; 0.000 0.000 2.000 -60.000; 0.000 -2.000 0.000 128.000; 0.000 0.000 0.000 1.000; mkheaderreg = 0, float2int = 0 FSLOUTPUTTYPE NIFTI fsl2TkReg: mov det = -8, ref det = -1 ---- Input registration matrix (computed) -------- 0.999 -0.039 0.011 2.750; -0.002 0.235 0.972 -0.065; -0.041 -0.971 0.235 -1.795; 0.000 0.000 0.000 1.000; --------------------------------------- ---- Input registration matrix -------- 0.999 -0.039 0.011 2.750; -0.002 0.235 0.972 -0.065; -0.041 -0.971 0.235 -1.795; 0.000 0.000 0.000 1.000; Determinant 1 subject = elmo.2005 RegMat --------------------------- 0.999 -0.039 0.011 2.750; -0.002 0.235 0.972 -0.065; -0.041 -0.971 0.235 -1.795; 0.000 0.000 0.000 1.000; Started at Wed Apr 24 21:19:53 EDT 2013 Ended at Wed Apr 24 21:21:16 EDT 2013 fslregister Done To check results, run: tkregister2 --mov /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/tmp.bbregister.11542/template.nii --reg /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/tmp.bbregister.11542/reg.init.dat --surf orig mri_segreg --mov /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/tmp.bbregister.11542/template.nii --init-reg /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/tmp.bbregister.11542/reg.init.dat --out-reg /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/tmp.bbregister.11542/bbr.pass1.dat --subsamp-brute 100 --subsamp 100 --tol 1e-4 --tol1d 1e-3 --brute -4 4 4 --surf white --gm-proj-frac 0.5 --gm-gt-wm 0.5 $Id: mri_segreg.c,v 1.105 2011/10/27 18:36:43 greve Exp $ setenv SUBJECTS_DIR /space/freesurfer/subjects/diffusion_recons cd /autofs/homes/010/ayendiki mri_segreg --mov /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/tmp.bbregister.11542/template.nii --init-reg /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/tmp.bbregister.11542/reg.init.dat --out-reg /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/tmp.bbregister.11542/bbr.pass1.dat --subsamp-brute 100 --subsamp 100 --tol 1e-4 --tol1d 1e-3 --brute -4 4 4 --surf white --gm-proj-frac 0.5 --gm-gt-wm 0.5 sysname Linux hostname compute-0-3 machine x86_64 user ayendiki movvol /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/tmp.bbregister.11542/template.nii regfile /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/tmp.bbregister.11542/reg.init.dat subject elmo.2005 dof 6 outregfile /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/tmp.bbregister.11542/bbr.pass1.dat UseMask 0 UseLH 1 UseRH 1 nsubsamp 100 PenaltySign -1 PenaltySlope 0.500000 PenaltyCenter 0.000000 surfname white GMProjFrac 0.500000 WMProjAbs 2.000000 lhcostfile (null) rhcostfile (null) interp trilinear (1) frame 0 TolPowell 0.000100 nMaxItersPowell 36 n1dmin 3 Profile 0 Gdiag_no -1 AddNoise 0 (0) SynthSeed 1366963296 TransRandMax 0.000000 RotRandMax 0.000000 Translations 0.000000 0.000000 0.000000 Rotations 0.000000 0.000000 0.000000 Input reg 0.999 -0.039 0.011 2.750; -0.002 0.235 0.972 -0.065; -0.041 -0.971 0.235 -1.795; 0.000 0.000 0.000 1.000; Loading mov Extracting frame 0 Projecting LH Surfs Loading lh.white surf Loading lh.thickness for GM GM Proj: 1 0.500000 2.000000 WM Proj: 0 0.500000 2.000000 Projecting RH Surfs Loading rh.white surf Loading rh.thickness Projecting RH Surfs Using lh.cortex.label Using rh.cortex.label Computing relative cost 0 -25.0 -25.0 -25.0 0.985268 1 -25.0 -25.0 25.0 1.001482 2 -25.0 25.0 -25.0 0.982003 3 -25.0 25.0 25.0 1.008824 4 25.0 -25.0 -25.0 0.996099 5 25.0 -25.0 25.0 1.011423 6 25.0 25.0 -25.0 0.981698 7 25.0 25.0 25.0 1.018598 REL: 8 0.479159 7.985394 0.998174 rel = 0.480035 Initial costs ---------------- Number of surface hits 2679 WM Intensity 208.2156 +/- 115.4473 Ctx Intensity 275.5323 +/- 149.1829 Pct Contrast 23.8271 +/- 42.4135 Cost 0.4792 RelCost 0.4800 ------------------------------------ Brute force preopt -4 4 4, n = 729 0 -4.0000 -4.0000 -4.0000 -4.0000 -4.0000 -4.0000 0.9894 0.9894 0.0 1 -4.0000 -4.0000 -4.0000 -4.0000 -4.0000 0.0000 0.9605 0.9605 0.0 2 -4.0000 -4.0000 -4.0000 -4.0000 -4.0000 4.0000 0.9387 0.9387 0.0 6 -4.0000 -4.0000 -4.0000 -4.0000 4.0000 -4.0000 0.9214 0.9214 0.0 7 -4.0000 -4.0000 -4.0000 -4.0000 4.0000 0.0000 0.8550 0.8550 0.0 97 -4.0000 0.0000 -4.0000 0.0000 4.0000 0.0000 0.8201 0.8201 0.0 123 -4.0000 0.0000 0.0000 0.0000 4.0000 -4.0000 0.7799 0.7799 0.0 124 -4.0000 0.0000 0.0000 0.0000 4.0000 0.0000 0.7612 0.7612 0.0 363 0.0000 0.0000 0.0000 0.0000 0.0000 -4.0000 0.7145 0.7145 0.0 364 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.4792 0.4792 0.0 Brute Force -------------------------- Min cost was 0.479159 Number of iterations 729 Search time 2.789000 sec Parameters at best (transmm, rotdeg) 0.000 0.000 0.000 0.000 0.000 0.000 -------------------------------------------- Starting Powell Minimization Init Powel Params dof = 6 0 0 1 0 2 0 3 0 4 0 5 0 fs_powell::minimize nparams 6 maxfev 36 ftol 0.000100 linmin_xtol_ 0.001000 powell nthiter 0 7 0.094 0.000 0.000 0.000 0.000 0.000 0.4773978059 9 0.082 0.000 0.000 0.000 0.000 0.000 0.4772499349 11 0.079 0.000 0.000 0.000 0.000 0.000 0.4772340561 13 0.077 0.000 0.000 0.000 0.000 0.000 0.4772304432 14 0.076 0.000 0.000 0.000 0.000 0.000 0.4772302793 27 0.076 -0.017 0.000 0.000 0.000 0.000 0.4771646253 28 0.076 -0.011 0.000 0.000 0.000 0.000 0.4771369853 32 0.076 -0.011 1.000 0.000 0.000 0.000 0.4668070762 41 0.076 -0.011 1.034 0.000 0.000 0.000 0.4661634835 49 0.076 -0.011 1.034 -0.618 0.000 0.000 0.4653729260 51 0.076 -0.011 1.034 -0.319 0.000 0.000 0.4607439548 52 0.076 -0.011 1.034 -0.321 0.000 0.000 0.4607336043 53 0.076 -0.011 1.034 -0.359 0.000 0.000 0.4604278046 55 0.076 -0.011 1.034 -0.402 0.000 0.000 0.4600394552 56 0.076 -0.011 1.034 -0.406 0.000 0.000 0.4598766710 57 0.076 -0.011 1.034 -0.426 0.000 0.000 0.4596078451 58 0.076 -0.011 1.034 -0.423 0.000 0.000 0.4595674694 59 0.076 -0.011 1.034 -0.420 0.000 0.000 0.4595472926 61 0.076 -0.011 1.034 -0.419 0.000 0.000 0.4595468171 71 0.076 -0.011 1.034 -0.419 -0.013 0.000 0.4595254976 72 0.076 -0.011 1.034 -0.419 -0.012 0.000 0.4595192497 73 0.076 -0.011 1.034 -0.419 -0.008 0.000 0.4595102351 85 0.076 -0.011 1.034 -0.419 -0.008 -0.023 0.4592383690 powell nthiter 1 96 -0.045 -0.011 1.034 -0.419 -0.008 -0.023 0.4567254201 98 -0.049 -0.011 1.034 -0.419 -0.008 -0.023 0.4567064497 99 -0.055 -0.011 1.034 -0.419 -0.008 -0.023 0.4566928111 100 -0.057 -0.011 1.034 -0.419 -0.008 -0.023 0.4566914905 101 -0.058 -0.011 1.034 -0.419 -0.008 -0.023 0.4566911867 102 -0.059 -0.011 1.034 -0.419 -0.008 -0.023 0.4566911059 108 -0.059 -0.629 1.034 -0.419 -0.008 -0.023 0.4501740042 110 -0.059 -0.433 1.034 -0.419 -0.008 -0.023 0.4430522877 111 -0.059 -0.368 1.034 -0.419 -0.008 -0.023 0.4421722856 113 -0.059 -0.378 1.034 -0.419 -0.008 -0.023 0.4421560909 114 -0.059 -0.375 1.034 -0.419 -0.008 -0.023 0.4421504952 115 -0.059 -0.374 1.034 -0.419 -0.008 -0.023 0.4421502751 125 -0.059 -0.374 0.944 -0.419 -0.008 -0.023 0.4399549576 127 -0.059 -0.374 0.968 -0.419 -0.008 -0.023 0.4394458655 129 -0.059 -0.374 0.969 -0.419 -0.008 -0.023 0.4394454388 140 -0.059 -0.374 0.969 -0.406 -0.008 -0.023 0.4394397527 141 -0.059 -0.374 0.969 -0.412 -0.008 -0.023 0.4394104173 152 -0.059 -0.374 0.969 -0.412 -0.009 -0.023 0.4394079702 153 -0.059 -0.374 0.969 -0.412 -0.010 -0.023 0.4394074665 166 -0.059 -0.374 0.969 -0.412 -0.010 -0.025 0.4394041568 powell nthiter 2 190 -0.059 -0.379 0.969 -0.412 -0.010 -0.025 0.4393859360 203 -0.059 -0.379 0.966 -0.412 -0.010 -0.025 0.4393780669 217 -0.059 -0.379 0.966 -0.411 -0.010 -0.025 0.4393760796 218 -0.059 -0.379 0.966 -0.410 -0.010 -0.025 0.4393759200 229 -0.059 -0.379 0.966 -0.410 -0.009 -0.025 0.4393755719 Powell done niters = 2 Computing relative cost 0 -25.0 -25.0 -25.0 0.981354 1 -25.0 -25.0 25.0 1.000527 2 -25.0 25.0 -25.0 0.994936 3 -25.0 25.0 25.0 1.001068 4 25.0 -25.0 -25.0 1.009771 5 25.0 -25.0 25.0 1.017197 6 25.0 25.0 -25.0 0.997246 7 25.0 25.0 25.0 1.026224 REL: 8 0.439376 8.028324 1.003541 rel = 0.437825 Number of iterations 2 Min cost was 0.439376 Number of FunctionCalls 241 TolPowell 0.000100 nMaxItersPowell 36 OptimizationTime 0.985000 sec Parameters at optimum (transmm) -0.05920 -0.37927 0.96597 Parameters at optimum (rotdeg) -0.41032 -0.00897 -0.02470 Final costs ---------------- Number of surface hits 2680 WM Intensity 204.6694 +/- 112.1848 Ctx Intensity 275.3230 +/- 147.4957 Pct Contrast 25.6131 +/- 41.7755 Cost 0.4394 RelCost 0.4800 Reg at min cost was 0.999 -0.039 0.011 2.691; -0.002 0.228 0.974 -0.458; -0.040 -0.973 0.228 -0.828; 0.000 0.000 0.000 1.000; Writing optimal reg to /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/tmp.bbregister.11542/bbr.pass1.dat, type = 14 Original Reg 0.999 -0.039 0.011 2.750; -0.002 0.235 0.972 -0.065; -0.041 -0.971 0.235 -1.795; 0.000 0.000 0.000 1.000; Original Reg - Optimal Reg -0.000 -0.000 -0.000 0.059; 0.001 0.007 -0.002 0.393; -0.000 0.002 0.007 -0.967; 0.000 0.000 0.000 0.000; Computing change in lh position LH rmsDiffMean 1.010890 Computing change in rh position Surface RMS Diff (mm) 1.010808 1.369522 mri_segreg done mri_segreg --mov /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/tmp.bbregister.11542/template.nii --init-reg /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/tmp.bbregister.11542/bbr.pass1.dat --out-reg /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/anatorig2diff.bbr.dat --brute -0.1 0.1 0.1 --interp trilinear --wm-proj-abs 2 --tol 1e-8 --tol1d 1e-3 --c0 0 --mincost /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/anatorig2diff.bbr.dat.mincost --dof 6 --nmax 36 --param /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/anatorig2diff.bbr.dat.param --surf white --cur-reg /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/tmp.bbregister.11542/reg.curopt.dat --gm-proj-frac 0.5 --nsub 1 --gm-gt-wm 0.5 $Id: mri_segreg.c,v 1.105 2011/10/27 18:36:43 greve Exp $ setenv SUBJECTS_DIR /space/freesurfer/subjects/diffusion_recons cd /autofs/homes/010/ayendiki mri_segreg --mov /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/tmp.bbregister.11542/template.nii --init-reg /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/tmp.bbregister.11542/bbr.pass1.dat --out-reg /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/anatorig2diff.bbr.dat --brute -0.1 0.1 0.1 --interp trilinear --wm-proj-abs 2 --tol 1e-8 --tol1d 1e-3 --c0 0 --mincost /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/anatorig2diff.bbr.dat.mincost --dof 6 --nmax 36 --param /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/anatorig2diff.bbr.dat.param --surf white --cur-reg /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/tmp.bbregister.11542/reg.curopt.dat --gm-proj-frac 0.5 --nsub 1 --gm-gt-wm 0.5 sysname Linux hostname compute-0-3 machine x86_64 user ayendiki movvol /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/tmp.bbregister.11542/template.nii regfile /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/tmp.bbregister.11542/bbr.pass1.dat subject elmo.2005 dof 6 outregfile /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/anatorig2diff.bbr.dat UseMask 0 UseLH 1 UseRH 1 nsubsamp 1 PenaltySign -1 PenaltySlope 0.500000 PenaltyCenter 0.000000 surfname white GMProjFrac 0.500000 WMProjAbs 2.000000 lhcostfile (null) rhcostfile (null) interp trilinear (1) frame 0 TolPowell 0.000000 nMaxItersPowell 36 n1dmin 3 Profile 0 Gdiag_no -1 AddNoise 0 (0) SynthSeed 1367454685 TransRandMax 0.000000 RotRandMax 0.000000 Translations 0.000000 0.000000 0.000000 Rotations 0.000000 0.000000 0.000000 Input reg 0.999 -0.039 0.011 2.691; -0.002 0.228 0.974 -0.458; -0.040 -0.973 0.228 -0.828; 0.000 0.000 0.000 1.000; Loading mov Extracting frame 0 Projecting LH Surfs Loading lh.white surf Loading lh.thickness for GM GM Proj: 1 0.500000 2.000000 WM Proj: 0 0.500000 2.000000 Projecting RH Surfs Loading rh.white surf Loading rh.thickness Projecting RH Surfs Using lh.cortex.label Using rh.cortex.label Computing relative cost 0 -25.0 -25.0 -25.0 0.994426 1 -25.0 -25.0 25.0 1.009215 2 -25.0 25.0 -25.0 1.028122 3 -25.0 25.0 25.0 0.993302 4 25.0 -25.0 -25.0 1.009181 5 25.0 -25.0 25.0 1.005755 6 25.0 25.0 -25.0 0.984185 7 25.0 25.0 25.0 1.020685 REL: 8 0.457067 8.044872 1.005609 rel = 0.454518 Initial costs ---------------- Number of surface hits 267146 WM Intensity 206.3329 +/- 113.7101 Ctx Intensity 277.7079 +/- 152.6916 Pct Contrast 25.3842 +/- 42.7198 Cost 0.4571 RelCost 0.4545 ------------------------------------ Brute force preopt -0.1 0.1 0.1, n = 729 0 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 0.4511 0.4511 0.0 3 -0.1000 -0.1000 -0.1000 -0.1000 0.0000 -0.1000 0.4495 0.4495 0.0 4 -0.1000 -0.1000 -0.1000 -0.1000 0.0000 0.0000 0.4494 0.4494 0.0 6 -0.1000 -0.1000 -0.1000 -0.1000 0.1000 -0.1000 0.4464 0.4464 0.0 12 -0.1000 -0.1000 -0.1000 0.0000 0.0000 -0.1000 0.4459 0.4459 0.0 15 -0.1000 -0.1000 -0.1000 0.0000 0.1000 -0.1000 0.4453 0.4453 0.0 21 -0.1000 -0.1000 -0.1000 0.1000 0.0000 -0.1000 0.4450 0.4450 0.0 24 -0.1000 -0.1000 -0.1000 0.1000 0.1000 -0.1000 0.4444 0.4444 0.0 36 -0.1000 -0.1000 0.0000 0.0000 -0.1000 -0.1000 0.4434 0.4434 0.0 54 -0.1000 -0.1000 0.1000 -0.1000 -0.1000 -0.1000 0.4425 0.4425 0.0 63 -0.1000 -0.1000 0.1000 0.0000 -0.1000 -0.1000 0.4412 0.4412 0.0 258 0.0000 -0.1000 -0.1000 0.0000 0.1000 -0.1000 0.4408 0.4408 0.0 282 0.0000 -0.1000 0.0000 0.0000 0.0000 -0.1000 0.4399 0.4399 0.0 364 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.4394 0.4394 0.0 606 0.1000 0.0000 0.0000 0.0000 0.0000 -0.1000 0.4393 0.4393 0.0 Brute Force -------------------------- Min cost was 0.439324 Number of iterations 729 Search time 1.404000 sec Parameters at best (transmm, rotdeg) 0.100 0.000 0.000 0.000 0.000 -0.100 -------------------------------------------- Starting Powell Minimization Init Powel Params dof = 6 0 0.1 1 0 2 0 3 0 4 0 5 -0.1 fs_powell::minimize nparams 6 maxfev 36 ftol 0.000000 linmin_xtol_ 0.001000 powell nthiter 0 9 0.095 0.000 0.000 0.000 0.000 -0.100 0.4542020223 10 0.096 0.000 0.000 0.000 0.000 -0.100 0.4542017370 18 0.096 -0.119 0.000 0.000 0.000 -0.100 0.4536342069 19 0.096 -0.104 0.000 0.000 0.000 -0.100 0.4535822687 20 0.096 -0.089 0.000 0.000 0.000 -0.100 0.4535558512 22 0.096 -0.090 0.000 0.000 0.000 -0.100 0.4535537768 25 0.096 -0.091 0.000 0.000 0.000 -0.100 0.4535528556 32 0.096 -0.091 -0.031 0.000 0.000 -0.100 0.4535116466 34 0.096 -0.091 -0.027 0.000 0.000 -0.100 0.4535109015 43 0.096 -0.091 -0.027 -0.081 0.000 -0.100 0.4533216331 44 0.096 -0.091 -0.027 -0.067 0.000 -0.100 0.4532858731 45 0.096 -0.091 -0.027 -0.056 0.000 -0.100 0.4532792536 46 0.096 -0.091 -0.027 -0.058 0.000 -0.100 0.4532772389 55 0.096 -0.091 -0.027 -0.058 -0.018 -0.100 0.4531727268 58 0.096 -0.091 -0.027 -0.058 -0.032 -0.100 0.4531453925 60 0.096 -0.091 -0.027 -0.058 -0.031 -0.100 0.4531453258 69 0.096 -0.091 -0.027 -0.058 -0.031 -0.315 0.4515692971 70 0.096 -0.091 -0.027 -0.058 -0.031 -0.308 0.4515495675 71 0.096 -0.091 -0.027 -0.058 -0.031 -0.284 0.4515342067 74 0.096 -0.091 -0.027 -0.058 -0.031 -0.279 0.4515332344 78 0.096 -0.091 -0.027 -0.058 -0.031 -0.281 0.4515311752 powell nthiter 1 87 0.088 -0.091 -0.027 -0.058 -0.031 -0.281 0.4514826416 89 0.056 -0.091 -0.027 -0.058 -0.031 -0.281 0.4514211147 90 0.063 -0.091 -0.027 -0.058 -0.031 -0.281 0.4514171324 99 0.063 -0.153 -0.027 -0.058 -0.031 -0.281 0.4512252898 103 0.063 -0.163 -0.027 -0.058 -0.031 -0.281 0.4512140417 104 0.063 -0.170 -0.027 -0.058 -0.031 -0.281 0.4512116765 114 0.063 -0.170 -0.026 -0.058 -0.031 -0.281 0.4512066311 115 0.063 -0.170 0.016 -0.058 -0.031 -0.281 0.4511693550 117 0.063 -0.170 0.005 -0.058 -0.031 -0.281 0.4511654081 122 0.063 -0.170 0.004 -0.058 -0.031 -0.281 0.4511653562 130 0.063 -0.170 0.004 -0.099 -0.031 -0.281 0.4510502825 133 0.063 -0.170 0.004 -0.097 -0.031 -0.281 0.4510491064 134 0.063 -0.170 0.004 -0.096 -0.031 -0.281 0.4510488123 142 0.063 -0.170 0.004 -0.096 0.011 -0.281 0.4509453364 144 0.063 -0.170 0.004 -0.096 0.008 -0.281 0.4509453358 146 0.063 -0.170 0.004 -0.096 0.009 -0.281 0.4509452793 154 0.063 -0.170 0.004 -0.096 0.009 -0.307 0.4509248140 155 0.063 -0.170 0.004 -0.096 0.009 -0.304 0.4509233164 156 0.063 -0.170 0.004 -0.096 0.009 -0.301 0.4509225664 157 0.063 -0.170 0.004 -0.096 0.009 -0.300 0.4509222524 159 0.063 -0.170 0.004 -0.096 0.009 -0.297 0.4509221531 161 0.063 -0.170 0.004 -0.096 0.009 -0.298 0.4509220315 powell nthiter 2 169 0.062 -0.170 0.004 -0.096 0.009 -0.298 0.4509198028 170 0.036 -0.170 0.004 -0.096 0.009 -0.298 0.4508739250 173 0.020 -0.170 0.004 -0.096 0.009 -0.298 0.4508641958 175 0.024 -0.170 0.004 -0.096 0.009 -0.298 0.4508633837 177 0.023 -0.170 0.004 -0.096 0.009 -0.298 0.4508633557 185 0.023 -0.167 0.004 -0.096 0.009 -0.298 0.4508605646 198 0.023 -0.167 0.022 -0.096 0.009 -0.298 0.4508355484 223 0.023 -0.167 0.022 -0.096 0.008 -0.298 0.4508346884 232 0.023 -0.167 0.022 -0.096 0.008 -0.334 0.4507780924 235 0.023 -0.167 0.022 -0.096 0.008 -0.341 0.4507747474 237 0.023 -0.167 0.022 -0.096 0.008 -0.343 0.4507746116 powell nthiter 3 249 0.014 -0.167 0.022 -0.096 0.008 -0.343 0.4507669546 250 0.015 -0.167 0.022 -0.096 0.008 -0.343 0.4507667538 251 0.016 -0.167 0.022 -0.096 0.008 -0.343 0.4507667138 261 0.016 -0.177 0.022 -0.096 0.008 -0.343 0.4507640394 266 0.016 -0.178 0.022 -0.096 0.008 -0.343 0.4507633197 267 0.016 -0.181 0.022 -0.096 0.008 -0.343 0.4507628989 277 0.016 -0.180 0.020 -0.096 0.008 -0.343 0.4507589655 278 0.016 -0.180 0.012 -0.096 0.008 -0.343 0.4507523497 280 0.016 -0.180 0.011 -0.096 0.008 -0.343 0.4507523040 297 0.016 -0.180 0.011 -0.096 0.038 -0.343 0.4507475046 298 0.016 -0.180 0.011 -0.096 0.025 -0.343 0.4507314621 299 0.016 -0.180 0.011 -0.096 0.024 -0.343 0.4507312000 300 0.016 -0.180 0.011 -0.096 0.023 -0.343 0.4507311405 301 0.016 -0.180 0.011 -0.096 0.022 -0.343 0.4507310826 312 0.016 -0.180 0.011 -0.096 0.022 -0.344 0.4507307729 313 0.016 -0.180 0.011 -0.096 0.022 -0.346 0.4507307165 powell nthiter 4 326 0.013 -0.180 0.011 -0.096 0.022 -0.345 0.4507291377 327 0.012 -0.180 0.011 -0.096 0.022 -0.345 0.4507290778 336 0.012 -0.174 0.011 -0.096 0.022 -0.345 0.4507273753 348 0.012 -0.174 0.014 -0.096 0.022 -0.345 0.4507264151 358 0.012 -0.174 0.014 -0.094 0.022 -0.345 0.4507260791 368 0.012 -0.174 0.014 -0.094 0.026 -0.345 0.4507250694 378 0.012 -0.174 0.014 -0.094 0.026 -0.347 0.4507246137 379 0.012 -0.174 0.014 -0.094 0.026 -0.348 0.4507243401 powell nthiter 5 392 0.011 -0.174 0.014 -0.094 0.026 -0.348 0.4507243081 402 0.011 -0.172 0.014 -0.094 0.026 -0.348 0.4507225628 404 0.011 -0.173 0.014 -0.094 0.026 -0.348 0.4507187853 433 0.011 -0.173 0.014 -0.094 0.025 -0.348 0.4507187746 446 0.011 -0.173 0.014 -0.094 0.025 -0.350 0.4507186665 456 0.011 -0.173 0.014 -0.094 0.025 -0.349 0.4507186181 459 0.011 -0.173 0.014 -0.094 0.025 -0.349 0.4507185599 461 0.011 -0.173 0.014 -0.094 0.025 -0.349 0.4507184903 463 0.011 -0.173 0.014 -0.094 0.025 -0.349 0.4507184819 powell nthiter 6 Powell done niters = 6 Computing relative cost 0 -25.0 -25.0 -25.0 0.993126 1 -25.0 -25.0 25.0 1.009772 2 -25.0 25.0 -25.0 1.031154 3 -25.0 25.0 25.0 0.987809 4 25.0 -25.0 -25.0 1.008500 5 25.0 -25.0 25.0 1.005232 6 25.0 25.0 -25.0 0.987331 7 25.0 25.0 25.0 1.021885 REL: 8 0.450719 8.044810 1.005601 rel = 0.448208 Number of iterations 6 Min cost was 0.450719 Number of FunctionCalls 538 TolPowell 0.000000 nMaxItersPowell 36 OptimizationTime 86.033000 sec Parameters at optimum (transmm) 0.01133 -0.17311 0.01313 Parameters at optimum (rotdeg) -0.09412 0.02482 -0.34942 Final costs ---------------- Number of surface hits 267254 WM Intensity 205.3518 +/- 114.1151 Ctx Intensity 276.3862 +/- 150.8906 Pct Contrast 25.5341 +/- 42.4991 Cost 0.4507 RelCost 0.4545 Reg at min cost was 0.999 -0.038 0.018 2.699; -0.008 0.227 0.974 -0.649; -0.041 -0.973 0.226 -0.815; 0.000 0.000 0.000 1.000; Writing optimal reg to /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/anatorig2diff.bbr.dat, type = 14 Original Reg 0.999 -0.039 0.011 2.691; -0.002 0.228 0.974 -0.458; -0.040 -0.973 0.228 -0.828; 0.000 0.000 0.000 1.000; Original Reg - Optimal Reg 0.000 -0.001 -0.006 -0.008; 0.006 0.001 -0.000 0.191; 0.000 0.000 0.002 -0.013; 0.000 0.000 0.000 0.000; Computing change in lh position LH rmsDiffMean 0.190675 Computing change in rh position Surface RMS Diff (mm) 0.286107 0.580246 mri_segreg done tkregister2_cmdl --mov /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi.nii.gz --reg /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/anatorig2diff.bbr.dat --noedit --fslregout /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/diff2anatorig.bbr.mat tkregister_tcl /usr/local/freesurfer/dev/tktools/tkregister2.tcl INFO: no target volume specified, assuming FreeSurfer orig volume. target volume orig movable volume /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi.nii.gz reg file /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/anatorig2diff.bbr.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.126 2012/01/20 21:00:37 greve Exp $ Diagnostic Level -1 ---- Input registration matrix -------- 0.999 -0.038 0.018 2.699; -0.008 0.227 0.974 -0.649; -0.041 -0.973 0.226 -0.815; 0.000 0.000 0.000 1.000; float2int = 0 --------------------------------------- INFO: loading target /space/freesurfer/subjects/diffusion_recons/elmo.2005/mri/orig.mgz Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi.nii.gz Tmov: -------------------- -2.000 0.000 0.000 128.000; 0.000 0.000 2.000 -60.000; 0.000 -2.000 0.000 128.000; 0.000 0.000 0.000 1.000; mkheaderreg = 0, float2int = 0 ---- Input registration matrix -------- 0.999 -0.038 0.018 2.699; -0.008 0.227 0.974 -0.649; -0.041 -0.973 0.226 -0.815; 0.000 0.000 0.000 1.000; Determinant 1 subject = elmo.2005 RegMat --------------------------- 0.999 -0.038 0.018 2.699; -0.008 0.227 0.974 -0.649; -0.041 -0.973 0.226 -0.815; 0.000 0.000 0.000 1.000; FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -8, ref det = -1 Cleaning up Started at Wed Apr 24 21:19:18 EDT 2013 Ended at Wed Apr 24 21:23:43 EDT 2013 BBR-Run-Time-Sec 265 bbregister Done To check results, run: tkregister2 --mov /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi.nii.gz --reg /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/anatorig2diff.bbr.dat --surf convert_xfm -omat /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/anatorig2diff.bbr.mat -inverse /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/diff2anatorig.bbr.mat convert_xfm -omat /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/anat2diff.bbr.mat -concat /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/anatorig2diff.bbr.mat /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/anat2anatorig.mat convert_xfm -omat /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/diff2anat.bbr.mat -inverse /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/anat2diff.bbr.mat #------------------------------------- #@# Inter-subject registration Wed Apr 24 21:23:43 EDT 2013 flirt -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/brain_anat.nii.gz -ref /usr/pubsw/packages/fsl/current/data/standard/MNI152_T1_1mm_brain.nii.gz -out /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/brain_anat_mni.nii.gz -omat /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/anat2mni.mat -cost mutualinfo convert_xfm -omat /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/mni2anat.mat -inverse /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/anat2mni.mat convert_xfm -omat /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/diff2mni.bbr.mat -concat /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/anat2mni.mat /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/diff2anat.bbr.mat convert_xfm -omat /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/mni2diff.bbr.mat -inverse /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/diff2mni.bbr.mat convert_xfm -omat /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/anatorig2mni.mat -concat /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/anat2mni.mat /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/anatorig2anat.mat convert_xfm -omat /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/mni2anatorig.mat -inverse /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/anatorig2mni.mat #------------------------------------- #@# Masks Wed Apr 24 21:27:55 EDT 2013 mri_binarize --i /space/freesurfer/subjects/diffusion_recons/elmo.2005/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --o /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anatorig/White-Matter.nii.gz $Id: mri_binarize.c,v 1.38 2012/12/06 22:26:29 greve Exp $ cwd /autofs/homes/010/ayendiki cmdline mri_binarize --i /space/freesurfer/subjects/diffusion_recons/elmo.2005/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --o /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anatorig/White-Matter.nii.gz sysname Linux hostname compute-0-3 machine x86_64 user ayendiki input /space/freesurfer/subjects/diffusion_recons/elmo.2005/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anatorig/White-Matter.nii.gz Binarizing based on matching values nMatch 5 0 2 1 7 2 41 3 46 4 77 binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Found 466816 values in range Counting number of voxels in first frame Found 466816 voxels in final mask mri_binarize done mri_binarize --i /space/freesurfer/subjects/diffusion_recons/elmo.2005/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --match 28 --match 60 --match 16 --o /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anatorig/White-Matter++.nii.gz $Id: mri_binarize.c,v 1.38 2012/12/06 22:26:29 greve Exp $ cwd /autofs/homes/010/ayendiki cmdline mri_binarize --i /space/freesurfer/subjects/diffusion_recons/elmo.2005/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --match 28 --match 60 --match 16 --o /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anatorig/White-Matter++.nii.gz sysname Linux hostname compute-0-3 machine x86_64 user ayendiki input /space/freesurfer/subjects/diffusion_recons/elmo.2005/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anatorig/White-Matter++.nii.gz Binarizing based on matching values nMatch 8 0 2 1 7 2 41 3 46 4 77 5 28 6 60 7 16 binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Found 496933 values in range Counting number of voxels in first frame Found 496933 voxels in final mask mri_binarize done mri_binarize --i /space/freesurfer/subjects/diffusion_recons/elmo.2005/mri/aparc+aseg.mgz --match 4 --match 43 --binval 0 --binvalnot 1 --o /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anatorig/notventricles.nii.gz $Id: mri_binarize.c,v 1.38 2012/12/06 22:26:29 greve Exp $ cwd /autofs/homes/010/ayendiki cmdline mri_binarize --i /space/freesurfer/subjects/diffusion_recons/elmo.2005/mri/aparc+aseg.mgz --match 4 --match 43 --binval 0 --binvalnot 1 --o /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anatorig/notventricles.nii.gz sysname Linux hostname compute-0-3 machine x86_64 user ayendiki input /space/freesurfer/subjects/diffusion_recons/elmo.2005/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anatorig/notventricles.nii.gz Binarizing based on matching values nMatch 2 0 4 1 43 binval 0 binvalnot 1 fstart = 0, fend = 0, nframes = 1 Found 23114 values in range Counting number of voxels in first frame Found 23114 voxels in final mask mri_binarize done mri_aparc2aseg --s elmo.2005 --annot aparc --wmparc-dmax 2 --labelwm --hypo-as-wm --o /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anatorig/aparc+aseg+2mm.nii.gz SUBJECTS_DIR /space/freesurfer/subjects/diffusion_recons subject elmo.2005 outvol /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anatorig/aparc+aseg+2mm.nii.gz useribbon 0 baseoffset 0 labeling wm labeling hypo-intensities as wm dmaxctx 2.000000 RipUnknown 0 Reading lh white surface /space/freesurfer/subjects/diffusion_recons/elmo.2005/surf/lh.white Reading lh pial surface /space/freesurfer/subjects/diffusion_recons/elmo.2005/surf/lh.pial Loading lh annotations from /space/freesurfer/subjects/diffusion_recons/elmo.2005/label/lh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /space/freesurfer/subjects/diffusion_recons/freesurfer/average/colortable_desikan_killiany.txt) Reading rh white surface /space/freesurfer/subjects/diffusion_recons/elmo.2005/surf/rh.white Reading rh pial surface /space/freesurfer/subjects/diffusion_recons/elmo.2005/surf/rh.pial Loading rh annotations from /space/freesurfer/subjects/diffusion_recons/elmo.2005/label/rh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /space/freesurfer/subjects/diffusion_recons/freesurfer/average/colortable_desikan_killiany.txt) Have color table for lh white annotation Have color table for rh white annotation Loading ribbon segmentation from /space/freesurfer/subjects/diffusion_recons/elmo.2005/mri/ribbon.mgz Loading filled from /space/freesurfer/subjects/diffusion_recons/elmo.2005/mri/filled.mgz Building hash of lh white Building hash of lh pial Building hash of rh white Building hash of rh pial Loading aseg from /space/freesurfer/subjects/diffusion_recons/elmo.2005/mri/aseg.mgz ASeg Vox2RAS: ----------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; ------------------------- Labeling Slice 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 nctx = 1019121 Used brute-force search on 0 voxels Fixing Parahip LH WM Found 1 clusters 0 k 889.000000 Fixing Parahip RH WM Found 1 clusters 0 k 714.000000 Writing output aseg to /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anatorig/aparc+aseg+2mm.nii.gz mri_binarize --i /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 2999 --o /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anatorig/cortex.nii.gz $Id: mri_binarize.c,v 1.38 2012/12/06 22:26:29 greve Exp $ cwd /autofs/homes/010/ayendiki cmdline mri_binarize --i /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 2999 --o /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anatorig/cortex.nii.gz sysname Linux hostname compute-0-3 machine x86_64 user ayendiki input /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anatorig/aparc+aseg+2mm.nii.gz frame 0 nErode3d 0 nErode2d 0 output /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anatorig/cortex.nii.gz Binarizing based on threshold min 1000 max 2999 binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Found 577197 values in range Counting number of voxels in first frame Found 577197 voxels in final mask mri_binarize done mri_binarize --i /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 4999 --o /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anatorig/cortex+2mm.nii.gz $Id: mri_binarize.c,v 1.38 2012/12/06 22:26:29 greve Exp $ cwd /autofs/homes/010/ayendiki cmdline mri_binarize --i /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 4999 --o /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anatorig/cortex+2mm.nii.gz sysname Linux hostname compute-0-3 machine x86_64 user ayendiki input /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anatorig/aparc+aseg+2mm.nii.gz frame 0 nErode3d 0 nErode2d 0 output /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anatorig/cortex+2mm.nii.gz Binarizing based on threshold min 1000 max 4999 binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Found 847877 values in range Counting number of voxels in first frame Found 847877 voxels in final mask mri_binarize done mri_binarize --i /space/freesurfer/subjects/diffusion_recons/elmo.2005/mri/aparc+aseg.mgz --match 16 --o /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anatorig/Brain-Stem.nii.gz $Id: mri_binarize.c,v 1.38 2012/12/06 22:26:29 greve Exp $ cwd /autofs/homes/010/ayendiki cmdline mri_binarize --i /space/freesurfer/subjects/diffusion_recons/elmo.2005/mri/aparc+aseg.mgz --match 16 --o /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anatorig/Brain-Stem.nii.gz sysname Linux hostname compute-0-3 machine x86_64 user ayendiki input /space/freesurfer/subjects/diffusion_recons/elmo.2005/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anatorig/Brain-Stem.nii.gz Binarizing based on matching values nMatch 1 0 16 binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Found 21835 values in range Counting number of voxels in first frame Found 21835 voxels in final mask mri_binarize done fslmaths /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anatorig/cortex+2mm.nii.gz -add /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anatorig/Brain-Stem.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anatorig/cortex+2mm+bs.nii.gz mri_convert /space/freesurfer/subjects/diffusion_recons/elmo.2005/mri/brainmask.mgz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anatorig/anat_brain_mask.nii.gz mri_convert /space/freesurfer/subjects/diffusion_recons/elmo.2005/mri/brainmask.mgz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anatorig/anat_brain_mask.nii.gz $Id: mri_convert.c,v 1.203 2012/12/06 21:44:17 greve Exp $ reading from /space/freesurfer/subjects/diffusion_recons/elmo.2005/mri/brainmask.mgz... TR=2530.00, TE=3.45, TI=1100.00, flip angle=7.00 i_ras = (-1, 6.33299e-08, -2.04891e-08) j_ras = (-9.31323e-09, 2.32831e-10, -1) k_ras = (7.07805e-08, 1, 1.74623e-09) writing to /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anatorig/anat_brain_mask.nii.gz... fslmaths /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anatorig/anat_brain_mask.nii.gz -mul /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anatorig/notventricles.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anatorig/anat_brain_mask-vent.nii.gz mri_convert /space/freesurfer/subjects/diffusion_recons/elmo.2005/mri/aparc+aseg.mgz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anatorig/aparc+aseg.nii.gz mri_convert /space/freesurfer/subjects/diffusion_recons/elmo.2005/mri/aparc+aseg.mgz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anatorig/aparc+aseg.nii.gz $Id: mri_convert.c,v 1.203 2012/12/06 21:44:17 greve Exp $ reading from /space/freesurfer/subjects/diffusion_recons/elmo.2005/mri/aparc+aseg.mgz... TR=2530.00, TE=3.45, TI=1100.00, flip angle=7.00 i_ras = (-1, 6.33299e-08, -2.04891e-08) j_ras = (-9.31323e-09, 2.32831e-10, -1) k_ras = (7.07805e-08, 1, 1.74623e-09) writing to /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anatorig/aparc+aseg.nii.gz... fslmaths /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anatorig/aparc+aseg.nii.gz -dilM -bin /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anatorig/aparc+aseg_mask.nii.gz flip4fsl /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anatorig/White-Matter.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anat/White-Matter.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anatorig/White-Matter.nii.gz x z -y /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anat/White-Matter.nii.gz fslorient -forceradiological /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anat/White-Matter.nii.gz flirt -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anat/White-Matter.nii.gz -ref /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/lowb.nii.gz -out /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/White-Matter.bbr.nii.gz -applyxfm -init /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anat/White-Matter.nii.gz -ref /usr/pubsw/packages/fsl/current/data/standard/MNI152_T1_1mm_brain.nii.gz -out /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/White-Matter.nii.gz -applyxfm -init /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anatorig/White-Matter++.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anat/White-Matter++.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anatorig/White-Matter++.nii.gz x z -y /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anat/White-Matter++.nii.gz fslorient -forceradiological /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anat/White-Matter++.nii.gz flirt -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anat/White-Matter++.nii.gz -ref /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/lowb.nii.gz -out /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/White-Matter++.bbr.nii.gz -applyxfm -init /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anat/White-Matter++.nii.gz -ref /usr/pubsw/packages/fsl/current/data/standard/MNI152_T1_1mm_brain.nii.gz -out /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/White-Matter++.nii.gz -applyxfm -init /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anatorig/notventricles.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anat/notventricles.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anatorig/notventricles.nii.gz x z -y /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anat/notventricles.nii.gz fslorient -forceradiological /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anat/notventricles.nii.gz flirt -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anat/notventricles.nii.gz -ref /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/lowb.nii.gz -out /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/notventricles.bbr.nii.gz -applyxfm -init /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anat/notventricles.nii.gz -ref /usr/pubsw/packages/fsl/current/data/standard/MNI152_T1_1mm_brain.nii.gz -out /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/notventricles.nii.gz -applyxfm -init /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anatorig/cortex.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anat/cortex.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anatorig/cortex.nii.gz x z -y /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anat/cortex.nii.gz fslorient -forceradiological /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anat/cortex.nii.gz flirt -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anat/cortex.nii.gz -ref /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/lowb.nii.gz -out /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/cortex.bbr.nii.gz -applyxfm -init /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anat/cortex.nii.gz -ref /usr/pubsw/packages/fsl/current/data/standard/MNI152_T1_1mm_brain.nii.gz -out /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/cortex.nii.gz -applyxfm -init /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anatorig/cortex+2mm.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anat/cortex+2mm.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anatorig/cortex+2mm.nii.gz x z -y /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anat/cortex+2mm.nii.gz fslorient -forceradiological /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anat/cortex+2mm.nii.gz flirt -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anat/cortex+2mm.nii.gz -ref /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/lowb.nii.gz -out /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/cortex+2mm.bbr.nii.gz -applyxfm -init /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anat/cortex+2mm.nii.gz -ref /usr/pubsw/packages/fsl/current/data/standard/MNI152_T1_1mm_brain.nii.gz -out /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/cortex+2mm.nii.gz -applyxfm -init /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anatorig/cortex+2mm+bs.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anat/cortex+2mm+bs.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anatorig/cortex+2mm+bs.nii.gz x z -y /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anat/cortex+2mm+bs.nii.gz fslorient -forceradiological /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anat/cortex+2mm+bs.nii.gz flirt -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anat/cortex+2mm+bs.nii.gz -ref /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/lowb.nii.gz -out /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/cortex+2mm+bs.bbr.nii.gz -applyxfm -init /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anat/cortex+2mm+bs.nii.gz -ref /usr/pubsw/packages/fsl/current/data/standard/MNI152_T1_1mm_brain.nii.gz -out /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/cortex+2mm+bs.nii.gz -applyxfm -init /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anatorig/aparc+aseg.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anat/aparc+aseg.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anatorig/aparc+aseg.nii.gz x z -y /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anat/aparc+aseg.nii.gz fslorient -forceradiological /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anat/aparc+aseg.nii.gz flirt -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anat/aparc+aseg.nii.gz -ref /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/lowb.nii.gz -out /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/aparc+aseg.bbr.nii.gz -applyxfm -init /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anat/aparc+aseg.nii.gz -ref /usr/pubsw/packages/fsl/current/data/standard/MNI152_T1_1mm_brain.nii.gz -out /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/aparc+aseg.nii.gz -applyxfm -init /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anatorig/aparc+aseg+2mm.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anat/aparc+aseg+2mm.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anatorig/aparc+aseg+2mm.nii.gz x z -y /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anat/aparc+aseg+2mm.nii.gz fslorient -forceradiological /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anat/aparc+aseg+2mm.nii.gz flirt -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anat/aparc+aseg+2mm.nii.gz -ref /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/lowb.nii.gz -out /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/aparc+aseg+2mm.bbr.nii.gz -applyxfm -init /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anat/aparc+aseg+2mm.nii.gz -ref /usr/pubsw/packages/fsl/current/data/standard/MNI152_T1_1mm_brain.nii.gz -out /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/aparc+aseg+2mm.nii.gz -applyxfm -init /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anatorig/aparc+aseg_mask.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anat/aparc+aseg_mask.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anatorig/aparc+aseg_mask.nii.gz x z -y /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anat/aparc+aseg_mask.nii.gz fslorient -forceradiological /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anat/aparc+aseg_mask.nii.gz flirt -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anat/aparc+aseg_mask.nii.gz -ref /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/lowb.nii.gz -out /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/aparc+aseg_mask.bbr.nii.gz -applyxfm -init /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anat/aparc+aseg_mask.nii.gz -ref /usr/pubsw/packages/fsl/current/data/standard/MNI152_T1_1mm_brain.nii.gz -out /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/aparc+aseg_mask.nii.gz -applyxfm -init /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anatorig/anat_brain_mask.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anat/anat_brain_mask.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anatorig/anat_brain_mask.nii.gz x z -y /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anat/anat_brain_mask.nii.gz fslorient -forceradiological /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anat/anat_brain_mask.nii.gz flirt -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anat/anat_brain_mask.nii.gz -ref /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/lowb.nii.gz -out /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/anat_brain_mask.bbr.nii.gz -applyxfm -init /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anat/anat_brain_mask.nii.gz -ref /usr/pubsw/packages/fsl/current/data/standard/MNI152_T1_1mm_brain.nii.gz -out /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/anat_brain_mask.nii.gz -applyxfm -init /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anatorig/anat_brain_mask-vent.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anat/anat_brain_mask-vent.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anatorig/anat_brain_mask-vent.nii.gz x z -y /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anat/anat_brain_mask-vent.nii.gz fslorient -forceradiological /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anat/anat_brain_mask-vent.nii.gz flirt -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anat/anat_brain_mask-vent.nii.gz -ref /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/lowb.nii.gz -out /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/anat_brain_mask-vent.bbr.nii.gz -applyxfm -init /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anat/anat_brain_mask-vent.nii.gz -ref /usr/pubsw/packages/fsl/current/data/standard/MNI152_T1_1mm_brain.nii.gz -out /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/anat_brain_mask-vent.nii.gz -applyxfm -init /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/anat2mni.mat -interp nearestneighbour fslstats -t /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi.nii.gz -k /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/White-Matter++.bbr.nii.gz -m -s | awk '{print $1/$2}' > /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi_snr.txt flirt -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/lowb_brain_mask.nii.gz -ref /usr/pubsw/packages/fsl/current/data/standard/MNI152_T1_1mm_brain.nii.gz -out /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lowb_brain_mask.bbr.nii.gz -applyxfm -init /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/diff2mni.bbr.mat -interp nearestneighbour flirt -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/lowb_brain_mask.nii.gz -ref /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/brain_anat_orig.nii.gz -out /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/anatorig/lowb_brain_mask.bbr.nii.gz -applyxfm -init /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/diff2anatorig.bbr.mat -interp nearestneighbour ln -sf /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/aparc+aseg_mask.bbr.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/nodif_brain_mask.nii.gz #------------------------------------- #@# Tensor fit Wed Apr 24 21:36:41 EDT 2013 dtifit -k /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi.nii.gz -m /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/aparc+aseg_mask.bbr.nii.gz -r /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/bvecs -b /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/bvals -o /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dtifit 0 128 0 128 0 60 0 slices processed 1 slices processed 2 slices processed 3 slices processed 4 slices processed 5 slices processed 6 slices processed 7 slices processed 8 slices processed 9 slices processed 10 slices processed 11 slices processed 12 slices processed 13 slices processed 14 slices processed 15 slices processed 16 slices processed 17 slices processed 18 slices processed 19 slices processed 20 slices processed 21 slices processed 22 slices processed 23 slices processed 24 slices processed 25 slices processed 26 slices processed 27 slices processed 28 slices processed 29 slices processed 30 slices processed 31 slices processed 32 slices processed 33 slices processed 34 slices processed 35 slices processed 36 slices processed 37 slices processed 38 slices processed 39 slices processed 40 slices processed 41 slices processed 42 slices processed 43 slices processed 44 slices processed 45 slices processed 46 slices processed 47 slices processed 48 slices processed 49 slices processed 50 slices processed 51 slices processed 52 slices processed 53 slices processed 54 slices processed 55 slices processed 56 slices processed 57 slices processed 58 slices processed 59 slices processed flirt -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dtifit_FA.nii.gz -ref /usr/pubsw/packages/fsl/current/data/standard/MNI152_T1_1mm_brain.nii.gz -out /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/mni/dtifit_FA.bbr.nii.gz -applyxfm -init /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/diff2mni.bbr.mat flirt -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dtifit_L1.nii.gz -ref /usr/pubsw/packages/fsl/current/data/standard/MNI152_T1_1mm_brain.nii.gz -out /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/mni/dtifit_L1.bbr.nii.gz -applyxfm -init /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/diff2mni.bbr.mat flirt -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dtifit_L2.nii.gz -ref /usr/pubsw/packages/fsl/current/data/standard/MNI152_T1_1mm_brain.nii.gz -out /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/mni/dtifit_L2.bbr.nii.gz -applyxfm -init /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/diff2mni.bbr.mat flirt -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dtifit_L3.nii.gz -ref /usr/pubsw/packages/fsl/current/data/standard/MNI152_T1_1mm_brain.nii.gz -out /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/mni/dtifit_L3.bbr.nii.gz -applyxfm -init /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/diff2mni.bbr.mat flirt -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dtifit_MD.nii.gz -ref /usr/pubsw/packages/fsl/current/data/standard/MNI152_T1_1mm_brain.nii.gz -out /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/mni/dtifit_MD.bbr.nii.gz -applyxfm -init /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/diff2mni.bbr.mat flirt -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dtifit_MO.nii.gz -ref /usr/pubsw/packages/fsl/current/data/standard/MNI152_T1_1mm_brain.nii.gz -out /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/mni/dtifit_MO.bbr.nii.gz -applyxfm -init /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/diff2mni.bbr.mat flirt -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dtifit_S0.nii.gz -ref /usr/pubsw/packages/fsl/current/data/standard/MNI152_T1_1mm_brain.nii.gz -out /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/mni/dtifit_S0.bbr.nii.gz -applyxfm -init /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/diff2mni.bbr.mat #------------------------------------- #@# Priors Wed Apr 24 21:37:37 EDT 2013 /usr/local/freesurfer/dev/bin/dmri_train --outdir /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni --out lh.cst_AS_avg33_mni_bbr rh.cst_AS_avg33_mni_bbr lh.ilf_AS_avg33_mni_bbr rh.ilf_AS_avg33_mni_bbr lh.unc_AS_avg33_mni_bbr rh.unc_AS_avg33_mni_bbr fmajor_PP_avg33_mni_bbr fminor_PP_avg33_mni_bbr lh.atr_PP_avg33_mni_bbr rh.atr_PP_avg33_mni_bbr lh.ccg_PP_avg33_mni_bbr rh.ccg_PP_avg33_mni_bbr lh.cab_PP_avg33_mni_bbr rh.cab_PP_avg33_mni_bbr lh.slfp_PP_avg33_mni_bbr rh.slfp_PP_avg33_mni_bbr lh.slft_PP_avg33_mni_bbr rh.slft_PP_avg33_mni_bbr --slist /tmp/subj33.elmo.2005.17878.txt --trk dlabel/mni/lh.cst_AS.bbr.trk dlabel/mni/rh.cst_AS.bbr.trk dlabel/mni/lh.ilf_AS.bbr.trk dlabel/mni/rh.ilf_AS.bbr.trk dlabel/mni/lh.unc_AS.bbr.trk dlabel/mni/rh.unc_AS.bbr.trk dlabel/mni/fmajor_PP.bbr.trk dlabel/mni/fminor_PP.bbr.trk dlabel/mni/lh.atr_PP.bbr.trk dlabel/mni/rh.atr_PP.bbr.trk dlabel/mni/lh.ccg_PP.bbr.trk dlabel/mni/rh.ccg_PP.bbr.trk dlabel/mni/lh.cab_PP.bbr.trk dlabel/mni/rh.cab_PP.bbr.trk dlabel/mni/lh.slfp_PP.bbr.trk dlabel/mni/rh.slfp_PP.bbr.trk dlabel/mni/lh.slft_PP.bbr.trk dlabel/mni/rh.slft_PP.bbr.trk --seg dlabel/mni/aparc+aseg.nii.gz --cmask dlabel/mni/cortex+2mm.nii.gz --lmask 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 --rois dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz dlabel/mni/fmajor_PP_roi1.bbr.nii.gz dlabel/mni/fmajor_PP_roi2.bbr.nii.gz dlabel/mni/fminor_PP_roi1.bbr.nii.gz dlabel/mni/fminor_PP_roi2.bbr.nii.gz dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz --bmask /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/aparc+aseg_mask.nii.gz --fa /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dtifit_FA.nii.gz --cptdir /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff --reg /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/mni2diff.bbr.mat --ncpts 6 6 5 5 5 5 7 5 5 5 5 5 4 4 5 5 5 5 --trunc cwd /autofs/homes/010/ayendiki cmdline /usr/local/freesurfer/dev/bin/dmri_train --outdir /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni --out lh.cst_AS_avg33_mni_bbr rh.cst_AS_avg33_mni_bbr lh.ilf_AS_avg33_mni_bbr rh.ilf_AS_avg33_mni_bbr lh.unc_AS_avg33_mni_bbr rh.unc_AS_avg33_mni_bbr fmajor_PP_avg33_mni_bbr fminor_PP_avg33_mni_bbr lh.atr_PP_avg33_mni_bbr rh.atr_PP_avg33_mni_bbr lh.ccg_PP_avg33_mni_bbr rh.ccg_PP_avg33_mni_bbr lh.cab_PP_avg33_mni_bbr rh.cab_PP_avg33_mni_bbr lh.slfp_PP_avg33_mni_bbr rh.slfp_PP_avg33_mni_bbr lh.slft_PP_avg33_mni_bbr rh.slft_PP_avg33_mni_bbr --slist /tmp/subj33.elmo.2005.17878.txt --trk dlabel/mni/lh.cst_AS.bbr.trk dlabel/mni/rh.cst_AS.bbr.trk dlabel/mni/lh.ilf_AS.bbr.trk dlabel/mni/rh.ilf_AS.bbr.trk dlabel/mni/lh.unc_AS.bbr.trk dlabel/mni/rh.unc_AS.bbr.trk dlabel/mni/fmajor_PP.bbr.trk dlabel/mni/fminor_PP.bbr.trk dlabel/mni/lh.atr_PP.bbr.trk dlabel/mni/rh.atr_PP.bbr.trk dlabel/mni/lh.ccg_PP.bbr.trk dlabel/mni/rh.ccg_PP.bbr.trk dlabel/mni/lh.cab_PP.bbr.trk dlabel/mni/rh.cab_PP.bbr.trk dlabel/mni/lh.slfp_PP.bbr.trk dlabel/mni/rh.slfp_PP.bbr.trk dlabel/mni/lh.slft_PP.bbr.trk dlabel/mni/rh.slft_PP.bbr.trk --seg dlabel/mni/aparc+aseg.nii.gz --cmask dlabel/mni/cortex+2mm.nii.gz --lmask 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 --rois dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz dlabel/mni/fmajor_PP_roi1.bbr.nii.gz dlabel/mni/fmajor_PP_roi2.bbr.nii.gz dlabel/mni/fminor_PP_roi1.bbr.nii.gz dlabel/mni/fminor_PP_roi2.bbr.nii.gz dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz --bmask /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/aparc+aseg_mask.nii.gz --fa /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dtifit_FA.nii.gz --cptdir /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff --reg /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/mni2diff.bbr.mat --ncpts 6 6 5 5 5 5 7 5 5 5 5 5 4 4 5 5 5 5 --trunc sysname Linux hostname compute-0-3 machine x86_64 user ayendiki Output directory: /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni Output directory in test subject's space: /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff Output base: lh.cst_AS_avg33_mni_bbr rh.cst_AS_avg33_mni_bbr lh.ilf_AS_avg33_mni_bbr rh.ilf_AS_avg33_mni_bbr lh.unc_AS_avg33_mni_bbr rh.unc_AS_avg33_mni_bbr fmajor_PP_avg33_mni_bbr fminor_PP_avg33_mni_bbr lh.atr_PP_avg33_mni_bbr rh.atr_PP_avg33_mni_bbr lh.ccg_PP_avg33_mni_bbr rh.ccg_PP_avg33_mni_bbr lh.cab_PP_avg33_mni_bbr rh.cab_PP_avg33_mni_bbr lh.slfp_PP_avg33_mni_bbr rh.slfp_PP_avg33_mni_bbr lh.slft_PP_avg33_mni_bbr rh.slft_PP_avg33_mni_bbr Training subject directory list: /tmp/subj33.elmo.2005.17878.txt Location of streamline files relative to base: dlabel/mni/lh.cst_AS.bbr.trk dlabel/mni/rh.cst_AS.bbr.trk dlabel/mni/lh.ilf_AS.bbr.trk dlabel/mni/rh.ilf_AS.bbr.trk dlabel/mni/lh.unc_AS.bbr.trk dlabel/mni/rh.unc_AS.bbr.trk dlabel/mni/fmajor_PP.bbr.trk dlabel/mni/fminor_PP.bbr.trk dlabel/mni/lh.atr_PP.bbr.trk dlabel/mni/rh.atr_PP.bbr.trk dlabel/mni/lh.ccg_PP.bbr.trk dlabel/mni/rh.ccg_PP.bbr.trk dlabel/mni/lh.cab_PP.bbr.trk dlabel/mni/rh.cab_PP.bbr.trk dlabel/mni/lh.slfp_PP.bbr.trk dlabel/mni/rh.slfp_PP.bbr.trk dlabel/mni/lh.slft_PP.bbr.trk dlabel/mni/rh.slft_PP.bbr.trk Location of start ROI files relative to base: dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz dlabel/mni/fmajor_PP_roi1.bbr.nii.gz dlabel/mni/fminor_PP_roi1.bbr.nii.gz dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Location of end ROI files relative to base: dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz dlabel/mni/fmajor_PP_roi2.bbr.nii.gz dlabel/mni/fminor_PP_roi2.bbr.nii.gz dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Location of cortex masks relative to base: dlabel/mni/cortex+2mm.nii.gz Label ID's from aparc+aseg to add to cortex mask: 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 Location of aparc+aseg's relative to base: dlabel/mni/aparc+aseg.nii.gz Brain mask for output subject: /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/aparc+aseg_mask.nii.gz FA map for output subject: /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dtifit_FA.nii.gz Affine registration from atlas to base for output subject: /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/mni2diff.bbr.mat Number of control points for initial spline: 6 6 5 5 5 5 7 5 5 5 5 5 4 4 5 5 5 5 Exclude previously chosen center streamlines: 0 Use truncated streamlines: 1 Loading brain mask of output subject from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/aparc+aseg_mask.nii.gz Loading FA map of output subject from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dtifit_FA.nii.gz Loading affine registration from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/mni2diff.bbr.mat Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/lh.cst_AS.bbr.trk INFO: Rejected 1074 streamlines for straying off mask INFO: Rejected 73 streamlines for reversing direction INFO: Rejected 17 streamlines as length outliers INFO: Have 7268 total streamlines (min/mean/max length: 59/99/138) Loading segmentation from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/cortex+2mm.nii.gz Processing pathway 1 of 18... Matching streamline ends INFO: Have 4507 non-truncated streamlines (min/mean/max length: 59/99/137) INFO: Center of mass of start points: (98+/-3, 98+/-6, 39+/-13) INFO: Center of mass of midpoints: (111+/-3, 109+/-4, 78+/-7) INFO: Center of mass of end points: (112+/-7, 106+/-8, 142+/-6) INFO: Split streamlines into 27 segments Computing path histograms INFO: Total streamline volume is 37324 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 102 voxels Selecting 6 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0281392 INFO: Points where local peeks in curvature occur are 100 104 52 (curv = 0.0739372) 109 110 69 (curv = 0.0484531) 115 109 97 (curv = 0.0318118) 116 108 102 (curv = 0.0491033) 114 104 115 (curv = 0.0385678) 111 104 130 (curv = 0.0426496) INFO: Intermediate dominant points are 100 99 33 100 104 52 109 110 69 116 108 102 113 104 120 113 104 142 INFO: Final dominant points are 100 99 33 100 104 52 109 110 69 116 108 102 111 104 130 113 104 142 INFO: Selected control points are 100 99 33 100 105 52 109 110 70 115 108 102 111 103 129 113 104 142 INFO: Distances between consecutive points are 20 21 33 28 13 INFO: Selected control points in test subject's space are 67 67 9 68 66 18 72 65 26 75 58 39 74 51 50 75 49 55 INFO: Distances between consecutive points in test subject's space are 9 9 15 13 5 Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cst_AS_avg33_mni_bbr_* Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cst_AS_avg33_mni_bbr_cpts_6.nii.gz Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6.nii.gz Done in 103.926 sec. Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/rh.cst_AS.bbr.trk INFO: Rejected 1451 streamlines for straying off mask INFO: Rejected 76 streamlines for reversing direction INFO: Rejected 31 streamlines as length outliers INFO: Have 7738 total streamlines (min/mean/max length: 58/98/140) Processing pathway 2 of 18... Matching streamline ends INFO: Have 4712 non-truncated streamlines (min/mean/max length: 58/98/140) INFO: Center of mass of start points: (81+/-3, 97+/-6, 41+/-14) INFO: Center of mass of midpoints: (68+/-3, 110+/-4, 79+/-7) INFO: Center of mass of end points: (69+/-8, 105+/-10, 141+/-7) INFO: Split streamlines into 25 segments Computing path histograms INFO: Total streamline volume is 44101 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 107 voxels Selecting 6 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0291383 INFO: Points where local peeks in curvature occur are 78 105 55 (curv = 0.0480778) 70 111 69 (curv = 0.0356581) 63 110 88 (curv = 0.0470675) 65 109 102 (curv = 0.0344946) 65 108 106 (curv = 0.031156) 65 108 116 (curv = 0.0626136) 68 103 127 (curv = 0.0403064) INFO: Intermediate dominant points are 82 100 31 78 105 55 63 110 88 64 109 100 65 108 116 69 102 142 INFO: Final dominant points are 82 100 31 78 105 55 63 110 88 65 108 105 65 108 116 69 102 142 INFO: Selected control points are 82 100 31 77 106 56 63 111 87 65 108 105 66 106 116 69 102 142 INFO: Distances between consecutive points are 26 34 18 11 26 INFO: Selected control points in test subject's space are 59 67 8 57 65 20 51 62 34 52 57 41 52 54 45 54 48 56 INFO: Distances between consecutive points in test subject's space are 12 16 9 5 13 Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cst_AS_avg33_mni_bbr_* Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cst_AS_avg33_mni_bbr_cpts_6.nii.gz Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6.nii.gz Done in 119.458 sec. Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/lh.ilf_AS.bbr.trk INFO: Rejected 68 streamlines for straying off mask INFO: Rejected 30 streamlines for reversing direction INFO: Rejected 22 streamlines as length outliers INFO: Have 3488 total streamlines (min/mean/max length: 53/91/135) Processing pathway 3 of 18... Matching streamline ends INFO: Have 1422 non-truncated streamlines (min/mean/max length: 53/97/135) INFO: Center of mass of start points: (134+/-8, 137+/-5, 41+/-10) INFO: Center of mass of midpoints: (133+/-4, 103+/-3, 59+/-5) INFO: Center of mass of end points: (115+/-13, 47+/-12, 71+/-14) INFO: Split streamlines into 25 segments Computing path histograms INFO: Total streamline volume is 38289 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 91 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0256462 INFO: Points where local peeks in curvature occur are 133 117 54 (curv = 0.0292212) 131 88 66 (curv = 0.0281282) 129 81 67 (curv = 0.037797) 123 71 70 (curv = 0.06275) 122 65 70 (curv = 0.0264093) 120 59 69 (curv = 0.0292062) INFO: Intermediate dominant points are 139 136 37 133 117 54 131 92 65 123 71 70 109 46 65 INFO: Final dominant points are 139 136 37 133 117 54 130 83 67 123 71 70 109 46 65 WARN: Defaulting to equidistant control points INFO: Selected control points are 139 136 37 133 115 55 131 93 65 122 70 70 109 46 65 INFO: Distances between consecutive points are 28 24 25 28 INFO: Selected control points in test subject's space are 85 83 17 83 70 20 82 59 21 78 47 18 72 37 12 INFO: Distances between consecutive points in test subject's space are 13 11 13 13 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 91 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.032025 INFO: Points where local peeks in curvature occur are 132 117 53 (curv = 0.060036) 134 109 56 (curv = 0.0410491) 135 95 59 (curv = 0.0780916) 126 76 69 (curv = 0.0630608) 120 60 69 (curv = 0.0507169) INFO: Intermediate dominant points are 136 136 36 132 117 53 135 95 59 126 76 69 109 48 69 INFO: Final dominant points are 136 136 36 132 117 53 135 95 59 126 76 69 109 48 69 INFO: Selected control points are 136 136 36 132 117 54 134 95 59 127 76 68 109 48 69 INFO: Distances between consecutive points are 26 23 22 33 INFO: Selected control points in test subject's space are 84 83 16 83 71 20 84 61 18 81 50 19 72 37 14 INFO: Distances between consecutive points in test subject's space are 13 10 11 17 Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_* Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5.nii.gz Done in 29.193 sec. Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/rh.ilf_AS.bbr.trk INFO: Rejected 12 streamlines for straying off mask INFO: Rejected 19 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 2128 total streamlines (min/mean/max length: 52/91/129) Processing pathway 4 of 18... Matching streamline ends INFO: Have 1024 non-truncated streamlines (min/mean/max length: 57/100/125) INFO: Center of mass of start points: (46+/-8, 140+/-5, 42+/-9) INFO: Center of mass of midpoints: (47+/-4, 105+/-2, 57+/-4) INFO: Center of mass of end points: (65+/-11, 46+/-11, 74+/-12) INFO: Split streamlines into 25 segments Computing path histograms INFO: Total streamline volume is 28390 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 104 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 13 INFO: Minimum allowable curvature at a dominant point is 0.0369794 INFO: Points where local peeks in curvature occur are 46 119 49 (curv = 0.0524572) 48 113 55 (curv = 0.0452764) 48 107 58 (curv = 0.0640623) 47 94 61 (curv = 0.0696708) 59 69 74 (curv = 0.0434269) INFO: Intermediate dominant points are 42 137 39 46 119 49 47 94 61 59 69 74 70 42 62 INFO: Final dominant points are 42 137 39 46 119 49 47 94 61 59 69 74 70 42 62 WARN: Defaulting to equidistant control points INFO: Selected control points are 42 137 39 48 113 55 49 87 65 62 61 75 70 42 62 INFO: Distances between consecutive points are 29 28 31 24 INFO: Selected control points in test subject's space are 40 82 19 43 68 21 44 55 21 50 41 20 54 35 11 INFO: Distances between consecutive points in test subject's space are 14 13 15 12 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 103 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 13 INFO: Minimum allowable curvature at a dominant point is 0.0317225 INFO: Points where local peeks in curvature occur are 46 118 50 (curv = 0.0388051) 48 111 56 (curv = 0.0555527) 48 104 60 (curv = 0.0505194) 47 97 60 (curv = 0.0628071) 60 66 75 (curv = 0.0333833) INFO: Intermediate dominant points are 41 137 39 46 118 50 47 97 60 60 66 75 71 41 64 INFO: Final dominant points are 41 137 39 46 118 50 47 97 60 60 66 75 71 41 64 WARN: Defaulting to equidistant control points INFO: Selected control points are 41 137 39 48 112 56 49 87 66 61 63 75 71 41 64 INFO: Distances between consecutive points are 31 27 28 27 INFO: Selected control points in test subject's space are 39 82 19 43 68 22 44 55 21 50 42 20 55 35 11 INFO: Distances between consecutive points in test subject's space are 15 13 14 12 WARN: Could not find satisfactory control point fit - try 2 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 97 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0267388 INFO: Points where local peeks in curvature occur are 47 129 47 (curv = 0.0624221) 49 118 56 (curv = 0.0769472) 48 106 59 (curv = 0.0335264) 48 89 65 (curv = 0.0476719) 55 73 71 (curv = 0.0312977) INFO: Intermediate dominant points are 40 145 49 49 118 56 48 89 65 55 73 71 63 51 72 INFO: Final dominant points are 40 145 49 49 118 56 48 89 65 55 73 71 63 51 72 INFO: Selected control points are 40 145 49 49 117 54 48 90 66 55 73 71 63 51 72 INFO: Distances between consecutive points are 30 30 19 23 INFO: Selected control points in test subject's space are 39 83 25 43 70 22 43 56 22 47 47 20 51 38 17 INFO: Distances between consecutive points in test subject's space are 14 14 10 10 Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_* Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5.nii.gz Done in 22.389 sec. Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/lh.unc_AS.bbr.trk INFO: Rejected 119 streamlines for straying off mask INFO: Rejected 28 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 5147 total streamlines (min/mean/max length: 8/57/104) Processing pathway 5 of 18... Matching streamline ends INFO: Have 3598 non-truncated streamlines (min/mean/max length: 8/57/101) INFO: Center of mass of start points: (128+/-7, 144+/-4, 41+/-5) INFO: Center of mass of midpoints: (125+/-2, 126+/-2, 55+/-3) INFO: Center of mass of end points: (113+/-11, 152+/-16, 58+/-5) INFO: Split streamlines into 10 segments Computing path histograms INFO: Total streamline volume is 22646 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 68 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0689837 INFO: Points where local peeks in curvature occur are 126 124 54 (curv = 0.148395) 124 130 60 (curv = 0.100467) 109 153 61 (curv = 0.0751884) INFO: Intermediate dominant points are 125 145 40 126 124 54 123 133 61 109 153 61 107 166 56 INFO: Final dominant points are 125 145 40 126 124 54 114 144 59 109 153 61 107 166 56 INFO: Selected control points are 125 145 40 128 125 53 115 144 61 109 152 60 107 166 56 INFO: Distances between consecutive points are 24 24 10 15 INFO: Selected control points in test subject's space are 79 86 20 81 75 22 74 82 29 72 86 30 70 93 31 INFO: Distances between consecutive points in test subject's space are 11 12 5 7 Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.unc_AS_avg33_mni_bbr_* Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.unc_AS_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5.nii.gz Done in 34.642 sec. Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from 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/usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from 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/usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/rh.unc_AS.bbr.trk INFO: Rejected 327 streamlines for straying off mask INFO: Rejected 113 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 6481 total streamlines (min/mean/max length: 8/62/107) Processing pathway 6 of 18... Matching streamline ends INFO: Have 4931 non-truncated streamlines (min/mean/max length: 8/61/107) INFO: Center of mass of start points: (53+/-6, 145+/-4, 41+/-6) INFO: Center of mass of midpoints: (55+/-2, 127+/-3, 55+/-3) INFO: Center of mass of end points: (71+/-9, 160+/-16, 57+/-5) INFO: Split streamlines into 11 segments Computing path histograms INFO: Total streamline volume is 24316 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 71 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.061514 INFO: Points where local peeks in curvature occur are 52 139 41 (curv = 0.0738758) 53 129 53 (curv = 0.172439) 59 135 61 (curv = 0.0964172) 66 141 59 (curv = 0.0640526) 72 150 61 (curv = 0.0977258) INFO: Intermediate dominant points are 53 148 39 53 129 53 64 139 59 72 150 61 79 173 55 INFO: Final dominant points are 53 148 39 53 129 53 66 141 59 72 150 61 79 173 55 INFO: Selected control points are 53 148 39 52 129 52 66 141 61 71 150 60 79 173 55 INFO: Distances between consecutive points are 23 21 10 25 INFO: Selected control points in test subject's space are 45 87 21 45 76 23 51 80 29 54 84 30 57 96 32 INFO: Distances between consecutive points in test subject's space are 11 9 5 13 Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.unc_AS_avg33_mni_bbr_* Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.unc_AS_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5.nii.gz Done in 50.019 sec. Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/fmajor_PP.bbr.trk INFO: Rejected 1059 streamlines for straying off mask INFO: Rejected 231 streamlines for reversing direction INFO: Rejected 122 streamlines as length outliers INFO: Have 8363 total streamlines (min/mean/max length: 87/131/159) Processing pathway 7 of 18... Matching streamline ends INFO: Have 6306 non-truncated streamlines (min/mean/max length: 87/133/161) INFO: Center of mass of start points: (103+/-6, 39+/-8, 99+/-16) INFO: Center of mass of midpoints: (90+/-3, 89+/-3, 83+/-3) INFO: Center of mass of end points: (74+/-6, 39+/-8, 99+/-17) INFO: Split streamlines into 35 segments Computing path histograms INFO: Total streamline volume is 66336 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 147 voxels Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 13 INFO: Minimum allowable curvature at a dominant point is 0.0554054 INFO: Points where local peeks in curvature occur are 110 45 96 (curv = 0.07509) 110 47 91 (curv = 0.0881221) 111 49 90 (curv = 0.0875113) 118 67 90 (curv = 0.128733) 106 83 84 (curv = 0.0691161) 94 89 83 (curv = 0.0623405) 80 87 84 (curv = 0.056117) 62 66 88 (curv = 0.142381) 71 51 89 (curv = 0.0939584) 76 42 99 (curv = 0.0561105) INFO: Intermediate dominant points are 99 43 115 110 47 91 118 67 90 106 83 84 62 66 88 71 50 89 79 41 112 INFO: Final dominant points are 99 43 115 110 47 91 118 67 90 106 83 84 62 66 88 76 42 99 79 41 112 WARN: Defaulting to equidistant control points INFO: Selected control points are 99 43 115 110 47 91 114 71 88 92 89 83 68 76 87 70 51 88 79 41 112 INFO: Distances between consecutive points are 27 25 29 28 25 28 INFO: Selected control points in test subject's space are 68 27 33 73 33 23 75 44 26 64 53 28 53 46 28 54 35 23 59 26 31 INFO: Distances between consecutive points in test subject's space are 13 12 14 13 12 13 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 134 voxels Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0515942 INFO: Points where local peeks in curvature occur are 111 47 89 (curv = 0.108254) 118 65 88 (curv = 0.129252) 82 88 84 (curv = 0.0580786) 61 67 87 (curv = 0.11257) 68 48 85 (curv = 0.100783) INFO: Intermediate dominant points are 100 41 113 111 47 89 118 65 88 95 89 83 82 88 84 61 67 87 71 37 97 INFO: Final dominant points are 100 41 113 113 52 87 118 65 88 95 89 83 82 88 84 61 67 87 71 37 97 WARN: Defaulting to equidistant control points INFO: Selected control points are 100 41 113 110 46 90 116 69 87 96 89 83 72 82 85 62 60 86 71 37 97 INFO: Distances between consecutive points are 26 24 29 25 24 27 INFO: Selected control points in test subject's space are 69 26 31 73 33 23 76 44 26 66 53 28 55 49 28 50 39 24 55 27 24 INFO: Distances between consecutive points in test subject's space are 11 12 14 12 12 13 WARN: Could not find satisfactory control point fit - try 2 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 143 voxels Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0559334 INFO: Points where local peeks in curvature occur are 110 45 96 (curv = 0.07509) 110 47 91 (curv = 0.0881221) 111 49 90 (curv = 0.0875113) 118 67 90 (curv = 0.128122) 107 82 84 (curv = 0.0707368) 94 89 83 (curv = 0.0628875) 62 68 88 (curv = 0.143691) 71 49 89 (curv = 0.0957825) 76 42 99 (curv = 0.0653517) INFO: Intermediate dominant points are 99 43 115 110 47 91 118 67 90 107 82 84 62 68 88 71 49 89 79 40 112 INFO: Final dominant points are 99 43 115 110 47 91 118 67 90 107 82 84 62 68 88 71 49 89 79 40 112 WARN: Defaulting to equidistant control points INFO: Selected control points are 99 43 115 110 47 91 115 70 88 94 89 83 70 78 86 69 53 88 79 40 112 INFO: Distances between consecutive points are 27 24 29 27 25 29 INFO: Selected control points in test subject's space are 68 27 33 73 33 23 75 44 26 65 53 28 54 47 27 54 36 24 59 26 31 INFO: Distances between consecutive points in test subject's space are 13 12 14 13 11 13 WARN: Could not find satisfactory control point fit - try 3 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 134 voxels Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0502357 INFO: Points where local peeks in curvature occur are 108 43 98 (curv = 0.0506052) 111 48 88 (curv = 0.111944) 118 65 88 (curv = 0.128816) 82 89 84 (curv = 0.059332) 61 68 87 (curv = 0.104917) 68 47 86 (curv = 0.0991588) INFO: Intermediate dominant points are 101 41 114 108 43 98 118 65 88 95 89 83 82 89 84 61 68 87 71 37 97 INFO: Final dominant points are 101 41 114 108 43 98 118 65 88 95 89 83 82 89 84 61 68 87 71 37 97 WARN: Defaulting to equidistant control points INFO: Selected control points are 101 41 114 110 46 90 116 69 87 96 89 83 72 82 85 63 59 86 71 37 97 INFO: Distances between consecutive points are 26 24 29 25 25 26 INFO: Selected control points in test subject's space are 69 26 32 73 33 23 76 44 26 66 53 28 55 49 28 51 39 24 55 27 24 INFO: Distances between consecutive points in test subject's space are 12 12 14 12 11 13 WARN: Could not find satisfactory control point fit - try 4 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 135 voxels Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0507905 INFO: Points where local peeks in curvature occur are 112 49 88 (curv = 0.120098) 118 65 89 (curv = 0.101834) 93 90 84 (curv = 0.0560339) 81 89 84 (curv = 0.06498) 61 66 87 (curv = 0.108146) INFO: Intermediate dominant points are 104 41 112 112 49 88 113 73 87 93 90 84 81 89 84 61 66 87 71 37 97 INFO: Final dominant points are 104 41 112 112 49 88 106 83 84 93 90 84 81 89 84 61 66 87 71 37 97 WARN: Defaulting to equidistant control points INFO: Selected control points are 104 41 112 111 48 88 114 72 87 94 90 84 72 83 85 62 61 86 71 37 97 INFO: Distances between consecutive points are 26 24 27 23 24 28 INFO: Selected control points in test subject's space are 71 26 31 74 34 22 75 45 26 65 53 29 55 50 28 50 39 24 55 27 24 INFO: Distances between consecutive points in test subject's space are 12 12 13 10 13 13 WARN: Could not find satisfactory control point fit - try 5 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 137 voxels Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0509301 INFO: Points where local peeks in curvature occur are 110 44 95 (curv = 0.0595566) 111 48 88 (curv = 0.109468) 118 65 88 (curv = 0.112229) 106 84 83 (curv = 0.0524963) 91 90 83 (curv = 0.0560674) 78 87 84 (curv = 0.0538081) 63 68 87 (curv = 0.099315) 68 52 85 (curv = 0.0809964) INFO: Intermediate dominant points are 100 41 113 110 44 95 118 65 88 91 90 83 72 82 84 63 68 87 72 37 97 INFO: Final dominant points are 100 41 113 110 44 95 118 65 88 91 90 83 70 80 84 63 68 87 72 37 97 WARN: Defaulting to equidistant control points INFO: Selected control points are 100 41 113 110 46 91 116 68 88 98 88 83 76 86 84 63 62 86 72 37 97 INFO: Distances between consecutive points are 25 23 27 22 27 29 INFO: Selected control points in test subject's space are 69 26 31 73 33 23 76 43 26 67 53 28 57 51 28 51 40 25 55 27 24 INFO: Distances between consecutive points in test subject's space are 11 11 14 10 13 14 WARN: Could not find satisfactory control point fit - try 6 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 134 voxels Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0538468 INFO: Points where local peeks in curvature occur are 111 48 90 (curv = 0.09234) 118 65 90 (curv = 0.144562) 105 84 84 (curv = 0.0678995) 94 89 84 (curv = 0.0658576) 90 89 83 (curv = 0.0589107) 81 88 84 (curv = 0.0580005) 61 68 87 (curv = 0.116361) 68 48 85 (curv = 0.120441) INFO: Intermediate dominant points are 99 42 115 111 48 90 118 65 90 105 84 84 61 68 87 68 48 85 71 36 97 INFO: Final dominant points are 99 42 115 113 52 88 118 65 90 105 84 84 61 68 87 68 48 85 71 36 97 INFO: Selected control points are 99 42 115 114 51 88 117 63 90 103 88 83 62 72 87 68 48 85 71 36 97 INFO: Distances between consecutive points are 32 13 29 44 25 17 INFO: Selected control points in test subject's space are 68 26 33 75 35 23 76 40 26 69 53 28 50 44 27 53 34 21 55 26 24 INFO: Distances between consecutive points in test subject's space are 15 6 15 21 12 9 Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fmajor_PP_avg33_mni_bbr_* Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fmajor_PP_avg33_mni_bbr_cpts_7.nii.gz Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7.nii.gz Done in 159.774 sec. Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/fminor_PP.bbr.trk INFO: Rejected 661 streamlines for straying off mask INFO: Rejected 428 streamlines for reversing direction INFO: Rejected 94 streamlines as length outliers INFO: Have 26444 total streamlines (min/mean/max length: 49/91/121) Processing pathway 8 of 18... Matching streamline ends INFO: Have 16945 non-truncated streamlines (min/mean/max length: 52/90/123) INFO: Center of mass of start points: (103+/-5, 187+/-6, 75+/-12) INFO: Center of mass of midpoints: (90+/-2, 150+/-4, 76+/-3) INFO: Center of mass of end points: (78+/-5, 188+/-7, 76+/-12) INFO: Split streamlines into 23 segments Computing path histograms INFO: Total streamline volume is 71023 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 93 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0606431 INFO: Points where local peeks in curvature occur are 105 176 67 (curv = 0.0804751) 107 165 67 (curv = 0.0677728) 104 156 69 (curv = 0.0769439) 88 151 74 (curv = 0.087339) 77 156 70 (curv = 0.0792613) 75 161 69 (curv = 0.0757762) 74 174 69 (curv = 0.0911243) INFO: Intermediate dominant points are 103 189 76 107 164 67 88 151 74 74 174 69 83 192 81 INFO: Final dominant points are 103 189 76 101 154 71 88 151 74 74 174 69 83 192 81 WARN: Defaulting to equidistant control points INFO: Selected control points are 103 189 76 107 164 67 87 151 73 74 170 69 83 192 81 INFO: Distances between consecutive points are 27 25 23 27 INFO: Selected control points in test subject's space are 69 99 44 71 90 35 61 83 35 55 92 38 59 99 47 INFO: Distances between consecutive points in test subject's space are 13 12 11 12 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 88 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0527433 INFO: Points where local peeks in curvature occur are 109 168 74 (curv = 0.0584827) 104 156 76 (curv = 0.0598356) 92 148 78 (curv = 0.0869158) 73 160 74 (curv = 0.0641373) 71 169 74 (curv = 0.0742557) 72 175 73 (curv = 0.074843) INFO: Intermediate dominant points are 106 185 80 109 168 74 92 148 78 73 160 74 78 187 81 INFO: Final dominant points are 106 185 80 109 168 74 92 148 78 73 160 74 78 187 81 INFO: Selected control points are 106 185 80 109 168 73 93 148 79 72 160 73 78 187 81 INFO: Distances between consecutive points are 19 26 25 29 INFO: Selected control points in test subject's space are 70 97 45 72 91 38 64 80 37 54 86 37 57 97 46 INFO: Distances between consecutive points in test subject's space are 9 14 12 15 Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fminor_PP_avg33_mni_bbr_* Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fminor_PP_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 1008.98 sec. Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from 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/usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/lh.atr_PP.bbr.trk INFO: Rejected 245 streamlines for straying off mask INFO: Rejected 6 streamlines for reversing direction INFO: Rejected 65 streamlines as length outliers INFO: Have 13263 total streamlines (min/mean/max length: 30/61/90) Processing pathway 9 of 18... Matching streamline ends INFO: Have 4794 non-truncated streamlines (min/mean/max length: 37/69/92) INFO: Center of mass of start points: (116+/-12, 180+/-10, 75+/-13) INFO: Center of mass of midpoints: (106+/-3, 134+/-2, 80+/-6) INFO: Center of mass of end points: (97+/-2, 114+/-3, 78+/-6) INFO: Split streamlines into 17 segments Computing path histograms INFO: Total streamline volume is 44242 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 69 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0492409 INFO: Points where local peeks in curvature occur are 110 177 72 (curv = 0.092235) 114 169 75 (curv = 0.141218) 111 159 74 (curv = 0.054827) 110 142 79 (curv = 0.0746263) INFO: Intermediate dominant points are 107 186 78 114 169 75 111 152 77 110 142 79 98 116 78 INFO: Final dominant points are 107 186 78 114 169 75 111 152 77 110 142 79 98 116 78 INFO: Selected control points are 107 186 78 113 169 73 111 152 77 109 142 78 98 116 78 INFO: Distances between consecutive points are 19 18 10 28 INFO: Selected control points in test subject's space are 71 98 44 73 91 39 73 83 37 72 78 36 67 66 31 INFO: Distances between consecutive points in test subject's space are 9 8 5 14 Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.atr_PP_avg33_mni_bbr_* Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.atr_PP_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 216.015 sec. Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from 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/usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/rh.atr_PP.bbr.trk INFO: Rejected 133 streamlines for straying off mask INFO: Rejected 19 streamlines for reversing direction INFO: Rejected 23 streamlines as length outliers INFO: Have 11837 total streamlines (min/mean/max length: 31/64/109) Processing pathway 10 of 18... Matching streamline ends INFO: Have 4596 non-truncated streamlines (min/mean/max length: 41/70/110) INFO: Center of mass of start points: (67+/-9, 185+/-10, 81+/-12) INFO: Center of mass of midpoints: (72+/-4, 135+/-2, 81+/-5) INFO: Center of mass of end points: (82+/-2, 115+/-3, 78+/-6) INFO: Split streamlines into 18 segments Computing path histograms INFO: Total streamline volume is 40093 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 75 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0475231 INFO: Points where local peeks in curvature occur are 67 166 78 (curv = 0.139403) 69 145 80 (curv = 0.0592232) 79 125 78 (curv = 0.08025) INFO: Intermediate dominant points are 69 191 80 67 166 78 69 145 80 79 125 78 82 114 80 INFO: Final dominant points are 69 191 80 67 166 78 69 145 80 79 125 78 82 114 80 INFO: Selected control points are 69 191 80 69 165 80 69 145 80 78 126 79 82 114 80 INFO: Distances between consecutive points are 26 20 21 13 INFO: Selected control points in test subject's space are 53 99 46 53 87 41 53 78 38 57 70 33 59 65 32 INFO: Distances between consecutive points in test subject's space are 13 9 10 5 Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.atr_PP_avg33_mni_bbr_* Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.atr_PP_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 149.772 sec. Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from 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/usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/lh.ccg_PP.bbr.trk INFO: Rejected 22 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Rejected 1 streamlines as length outliers INFO: Have 5255 total streamlines (min/mean/max length: 25/68/135) Processing pathway 11 of 18... Matching streamline ends INFO: Have 1468 non-truncated streamlines (min/mean/max length: 55/86/135) INFO: Center of mass of start points: (99+/-4, 80+/-7, 103+/-7) INFO: Center of mass of midpoints: (96+/-2, 124+/-2, 105+/-2) INFO: Center of mass of end points: (97+/-5, 163+/-7, 86+/-8) INFO: Split streamlines into 22 segments Computing path histograms INFO: Total streamline volume is 20036 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 93 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0242846 INFO: Points where local peeks in curvature occur are 99 92 103 (curv = 0.0317396) 96 102 105 (curv = 0.0474075) 96 110 106 (curv = 0.0279286) 97 113 106 (curv = 0.0272309) 97 120 106 (curv = 0.0265721) 97 129 104 (curv = 0.0269178) 97 143 98 (curv = 0.0305111) 96 146 97 (curv = 0.0288442) 96 155 91 (curv = 0.0338547) INFO: Intermediate dominant points are 101 74 96 96 102 105 97 122 106 97 143 98 97 163 79 INFO: Final dominant points are 101 74 96 96 102 105 97 131 104 97 143 98 97 163 79 INFO: Selected control points are 101 74 96 97 102 106 97 130 104 96 143 100 97 163 79 INFO: Distances between consecutive points are 30 28 14 29 INFO: Selected control points in test subject's space are 69 44 31 67 55 40 67 68 45 66 74 45 66 87 40 INFO: Distances between consecutive points in test subject's space are 14 14 6 14 Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_* Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 37.312 sec. Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/rh.ccg_PP.bbr.trk INFO: Rejected 45 streamlines for straying off mask INFO: Rejected 8 streamlines for reversing direction INFO: Rejected 44 streamlines as length outliers INFO: Have 4325 total streamlines (min/mean/max length: 30/66/116) Processing pathway 12 of 18... Matching streamline ends INFO: Have 921 non-truncated streamlines (min/mean/max length: 56/83/119) INFO: Center of mass of start points: (81+/-4, 81+/-8, 100+/-9) INFO: Center of mass of midpoints: (83+/-1, 125+/-2, 106+/-2) INFO: Center of mass of end points: (83+/-4, 159+/-6, 89+/-8) INFO: Split streamlines into 22 segments Computing path histograms INFO: Total streamline volume is 18987 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 81 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0230908 INFO: Points where local peeks in curvature occur are 80 91 104 (curv = 0.0447291) 81 106 107 (curv = 0.0271521) 82 117 107 (curv = 0.0414315) 82 132 103 (curv = 0.0282386) 83 139 99 (curv = 0.0296175) INFO: Intermediate dominant points are 81 77 93 80 91 104 82 117 107 83 139 99 87 156 90 INFO: Final dominant points are 81 77 93 80 91 104 82 117 107 83 139 99 87 156 90 INFO: Selected control points are 81 77 93 80 92 105 82 117 107 82 138 99 87 156 90 INFO: Distances between consecutive points are 19 25 22 21 INFO: Selected control points in test subject's space are 59 46 30 59 50 38 60 61 44 59 72 44 62 82 44 INFO: Distances between consecutive points in test subject's space are 9 13 11 10 Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_* Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 27.274 sec. Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/lh.cab_PP.bbr.trk INFO: Rejected 69 streamlines for straying off mask INFO: Rejected 63 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 4129 total streamlines (min/mean/max length: 2/45/95) Processing pathway 13 of 18... Matching streamline ends INFO: Have 1318 non-truncated streamlines (min/mean/max length: 17/53/89) INFO: Center of mass of start points: (109+/-6, 81+/-12, 75+/-13) INFO: Center of mass of midpoints: (111+/-2, 99+/-4, 58+/-5) INFO: Center of mass of end points: (115+/-5, 122+/-13, 42+/-11) INFO: Split streamlines into 12 segments Computing path histograms INFO: Total streamline volume is 18003 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 62 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0313147 INFO: Points where local peeks in curvature occur are 103 83 75 (curv = 0.0437025) 110 93 60 (curv = 0.0374356) 114 113 42 (curv = 0.0822433) INFO: Intermediate dominant points are 103 75 85 110 93 60 114 113 42 116 127 39 INFO: Final dominant points are 103 75 85 110 93 60 114 113 42 116 127 39 WARN: Defaulting to equidistant control points INFO: Selected control points are 103 75 85 108 89 67 112 106 47 116 127 39 INFO: Distances between consecutive points are 23 27 23 INFO: Selected control points in test subject's space are 70 47 26 72 56 21 73 67 16 75 78 16 INFO: Distances between consecutive points in test subject's space are 10 12 11 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 58 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0243762 INFO: Points where local peeks in curvature occur are 116 113 45 (curv = 0.0532996) INFO: Intermediate dominant points are 105 80 76 110 97 60 116 113 45 116 132 33 INFO: Final dominant points are 105 80 76 113 104 53 116 113 45 116 132 33 WARN: Defaulting to equidistant control points INFO: Selected control points are 105 80 76 110 97 60 116 114 44 116 132 33 INFO: Distances between consecutive points are 24 24 21 INFO: Selected control points in test subject's space are 70 50 23 72 61 19 75 72 16 75 82 15 INFO: Distances between consecutive points in test subject's space are 12 12 10 WARN: Could not find satisfactory control point fit - try 2 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 56 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0249391 INFO: Points where local peeks in curvature occur are 107 91 67 (curv = 0.0410954) 116 116 43 (curv = 0.049922) INFO: Intermediate dominant points are 107 80 75 107 91 67 116 116 43 117 131 33 INFO: Final dominant points are 107 80 75 107 91 67 116 116 43 117 131 33 WARN: Defaulting to equidistant control points INFO: Selected control points are 107 80 75 109 97 61 116 114 44 117 131 33 INFO: Distances between consecutive points are 22 25 20 INFO: Selected control points in test subject's space are 71 51 23 72 61 20 75 72 16 75 81 14 INFO: Distances between consecutive points in test subject's space are 10 12 9 WARN: Could not find satisfactory control point fit - try 3 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 65 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0434333 INFO: Points where local peeks in curvature occur are 105 86 73 (curv = 0.0715313) 120 117 37 (curv = 0.145477) INFO: Intermediate dominant points are 105 75 88 105 86 73 120 117 37 117 131 36 INFO: Final dominant points are 105 75 88 105 86 73 120 117 37 117 131 36 WARN: Defaulting to equidistant control points INFO: Selected control points are 105 75 88 110 95 64 118 109 43 117 131 36 INFO: Distances between consecutive points are 32 26 23 INFO: Selected control points in test subject's space are 71 46 27 72 59 21 76 70 14 75 81 16 INFO: Distances between consecutive points in test subject's space are 14 14 11 WARN: Could not find satisfactory control point fit - try 4 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 58 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0275492 INFO: Points where local peeks in curvature occur are 107 91 67 (curv = 0.0408923) 109 98 61 (curv = 0.0283712) 113 109 47 (curv = 0.0376695) 116 118 42 (curv = 0.0559133) INFO: Intermediate dominant points are 107 80 75 107 91 67 116 118 42 117 130 33 INFO: Final dominant points are 107 80 75 107 91 67 116 118 42 117 130 33 WARN: Defaulting to equidistant control points INFO: Selected control points are 107 80 75 109 98 61 115 114 44 117 130 33 INFO: Distances between consecutive points are 23 24 20 INFO: Selected control points in test subject's space are 71 51 23 72 61 20 74 72 16 75 81 14 INFO: Distances between consecutive points in test subject's space are 10 12 9 WARN: Could not find satisfactory control point fit - try 5 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 57 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.02502 INFO: Points where local peeks in curvature occur are 108 90 67 (curv = 0.0360269) 114 110 47 (curv = 0.0408157) 116 118 42 (curv = 0.0600972) INFO: Intermediate dominant points are 108 80 75 111 99 60 116 118 42 117 130 33 INFO: Final dominant points are 108 80 75 113 109 49 116 118 42 117 130 33 WARN: Defaulting to equidistant control points INFO: Selected control points are 108 80 75 110 98 61 114 113 45 117 130 33 INFO: Distances between consecutive points are 23 22 21 INFO: Selected control points in test subject's space are 72 51 23 72 61 20 74 71 16 75 81 14 INFO: Distances between consecutive points in test subject's space are 10 11 10 WARN: Could not find satisfactory control point fit - try 6 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 59 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0269648 INFO: Points where local peeks in curvature occur are 105 88 69 (curv = 0.04193) 111 97 59 (curv = 0.0364497) 114 117 42 (curv = 0.0607358) 113 123 40 (curv = 0.0383984) INFO: Intermediate dominant points are 103 77 77 105 88 69 114 117 42 113 134 36 INFO: Final dominant points are 103 77 77 105 88 69 114 117 42 113 134 36 WARN: Defaulting to equidistant control points INFO: Selected control points are 103 77 77 110 95 61 114 114 44 113 134 36 INFO: Distances between consecutive points are 25 26 22 INFO: Selected control points in test subject's space are 70 49 23 72 60 20 74 72 16 73 82 16 INFO: Distances between consecutive points in test subject's space are 12 13 10 WARN: Could not find satisfactory control point fit - try 7 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 63 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0382436 INFO: Points where local peeks in curvature occur are 104 90 66 (curv = 0.054422) 114 114 43 (curv = 0.0637031) INFO: Intermediate dominant points are 110 76 78 104 90 66 114 114 43 111 129 36 INFO: Final dominant points are 110 76 78 104 90 66 114 114 43 111 129 36 WARN: Defaulting to equidistant control points INFO: Selected control points are 110 76 78 108 95 60 114 113 44 111 129 36 INFO: Distances between consecutive points are 26 25 18 INFO: Selected control points in test subject's space are 73 48 23 71 60 19 74 71 16 72 80 15 INFO: Distances between consecutive points in test subject's space are 13 12 9 WARN: Could not find satisfactory control point fit - try 8 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 52 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0241599 INFO: Points where local peeks in curvature occur are 112 100 56 (curv = 0.0282194) 112 106 51 (curv = 0.0284236) 115 115 44 (curv = 0.0461041) 114 120 41 (curv = 0.0308676) INFO: Intermediate dominant points are 110 79 74 111 96 60 115 115 44 116 131 37 INFO: Final dominant points are 110 79 74 112 106 51 115 115 44 116 131 37 INFO: Selected control points are 110 79 74 111 105 51 111 111 43 116 131 37 INFO: Distances between consecutive points are 35 10 21 INFO: Selected control points in test subject's space are 73 50 22 73 66 17 73 70 15 75 81 16 INFO: Distances between consecutive points in test subject's space are 17 4 11 Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cab_PP_avg33_mni_bbr_* Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cab_PP_avg33_mni_bbr_cpts_4.nii.gz Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_4.nii.gz Done in 22.645 sec. Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/rh.cab_PP.bbr.trk INFO: Rejected 181 streamlines for straying off mask INFO: Rejected 65 streamlines for reversing direction INFO: Rejected 13 streamlines as length outliers INFO: Have 3977 total streamlines (min/mean/max length: 13/44/89) Processing pathway 14 of 18... Matching streamline ends INFO: Have 1181 non-truncated streamlines (min/mean/max length: 26/54/92) INFO: Center of mass of start points: (71+/-5, 80+/-7, 77+/-7) INFO: Center of mass of midpoints: (67+/-2, 101+/-2, 56+/-2) INFO: Center of mass of end points: (63+/-4, 126+/-7, 38+/-4) INFO: Split streamlines into 13 segments Computing path histograms INFO: Total streamline volume is 16577 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 62 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.026277 INFO: Points where local peeks in curvature occur are 65 108 46 (curv = 0.0700887) INFO: Intermediate dominant points are 74 76 83 68 96 63 65 108 46 66 131 38 INFO: Final dominant points are 74 76 83 67 100 57 65 108 46 66 131 38 INFO: Selected control points are 74 76 83 66 99 57 64 104 44 66 131 38 INFO: Distances between consecutive points are 36 14 28 INFO: Selected control points in test subject's space are 56 47 26 52 62 19 50 66 15 51 80 17 INFO: Distances between consecutive points in test subject's space are 17 6 14 Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cab_PP_avg33_mni_bbr_* Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cab_PP_avg33_mni_bbr_cpts_4.nii.gz Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_4.nii.gz Done in 22.702 sec. Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/lh.slfp_PP.bbr.trk INFO: Rejected 296 streamlines for straying off mask INFO: Rejected 688 streamlines for reversing direction INFO: Rejected 34 streamlines as length outliers INFO: Have 9249 total streamlines (min/mean/max length: 20/59/102) Processing pathway 15 of 18... Matching streamline ends INFO: Have 3921 non-truncated streamlines (min/mean/max length: 26/65/102) INFO: Center of mass of start points: (145+/-6, 127+/-5, 98+/-11) INFO: Center of mass of midpoints: (128+/-4, 106+/-4, 102+/-4) INFO: Center of mass of end points: (141+/-10, 84+/-10, 111+/-12) INFO: Split streamlines into 14 segments Computing path histograms INFO: Total streamline volume is 50167 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 72 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.05886 INFO: Points where local peeks in curvature occur are 129 115 99 (curv = 0.0903529) 130 86 103 (curv = 0.141374) INFO: Intermediate dominant points are 150 131 97 129 115 99 129 102 102 130 86 103 150 86 113 INFO: Final dominant points are 150 131 97 129 115 99 128 95 103 130 86 103 150 86 113 INFO: Selected control points are 150 131 97 129 115 98 129 96 103 130 86 104 150 86 113 INFO: Distances between consecutive points are 26 20 10 22 INFO: Selected control points in test subject's space are 92 70 41 82 63 39 82 53 37 83 48 36 92 47 39 INFO: Distances between consecutive points in test subject's space are 12 10 5 10 Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_* Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 103.347 sec. Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from 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/usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/rh.slfp_PP.bbr.trk INFO: Rejected 828 streamlines for straying off mask INFO: Rejected 410 streamlines for reversing direction INFO: Rejected 82 streamlines as length outliers INFO: Have 14302 total streamlines (min/mean/max length: 18/63/97) Processing pathway 16 of 18... Matching streamline ends INFO: Have 6871 non-truncated streamlines (min/mean/max length: 27/69/100) INFO: Center of mass of start points: (34+/-8, 130+/-6, 97+/-12) INFO: Center of mass of midpoints: (52+/-4, 109+/-3, 103+/-3) INFO: Center of mass of end points: (40+/-9, 81+/-10, 113+/-11) New invocation of trac-all Wed Apr 24 22:34:14 EDT 2013 /autofs/space/pluto_001/users/ayendiki/tract /usr/local/freesurfer/dev/bin/trac-all -bedp -c dmrirc.tutorial -no-isrunning Subject elmo.2005 SUBJECTS_DIR /space/freesurfer/subjects/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/dev Actual FREESURFER_HOME /autofs/cluster/freesurfer/centos6_x86_64/dev build-stamp.txt: freesurfer-x86_64-unknown-linux-gnu-dev5-20130424 ayendiki launchpad Linux launchpad 2.6.32-279.22.1.el6.x86_64 #1 SMP Wed Feb 6 03:10:46 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize unlimited coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 8192 memorylocked 64 kbytes maxproc 256703 total used free shared buffers cached Mem: 32877832 14723736 18154096 0 619928 9187716 -/+ buffers/cache: 4916092 27961740 Swap: 67108848 22796 67086052 ######################################## Program versions: $Id: trac-all,v 1.47 2013/02/23 01:59:42 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2013/04/25-02:34:21-GMT BuildTimeStamp: Apr 24 2013 20:05:32 CVS: $Id: mri_convert.c,v 1.203 2012/12/06 21:44:17 greve Exp $ User: ayendiki Machine: launchpad Platform: Linux PlatformVersion: 2.6.32-279.22.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 FLIRT version 5.5 $Id: bbregister,v 1.56 2013/03/25 18:04:29 greve Exp $ $Id: mri_cvs_register,v 1.45 2013/02/07 22:48:48 lzollei Exp $ ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2013/04/25-02:34:26-GMT BuildTimeStamp: Apr 24 2013 20:05:32 CVS: User: ayendiki Machine: launchpad Platform: Linux PlatformVersion: 2.6.32-279.22.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2013/04/25-02:34:31-GMT BuildTimeStamp: Apr 24 2013 20:05:32 CVS: User: ayendiki Machine: launchpad Platform: Linux PlatformVersion: 2.6.32-279.22.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2013/04/25-02:34:35-GMT BuildTimeStamp: Apr 24 2013 20:05:32 CVS: User: ayendiki Machine: launchpad Platform: Linux PlatformVersion: 2.6.32-279.22.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2013/04/25-02:34:39-GMT BuildTimeStamp: Apr 24 2013 20:05:32 CVS: User: ayendiki Machine: launchpad Platform: Linux PlatformVersion: 2.6.32-279.22.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 INFO: Split streamlines into 15 segments Computing path histograms INFO: Total streamline volume is 64013 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 76 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0605977 INFO: Points where local peeks in curvature occur are 40 123 95 (curv = 0.0756807) 51 118 101 (curv = 0.0874053) 54 111 103 (curv = 0.077998) 53 97 106 (curv = 0.0608137) 52 79 102 (curv = 0.133891) INFO: Intermediate dominant points are 31 131 96 51 118 101 53 97 106 52 79 102 42 73 114 INFO: Final dominant points are 31 131 96 51 118 101 53 97 106 52 79 102 42 73 114 INFO: Selected control points are 31 131 96 51 117 100 54 98 106 52 79 102 42 73 114 INFO: Distances between consecutive points are 25 20 20 17 INFO: Selected control points in test subject's space are 35 69 42 45 62 41 47 52 40 46 44 35 41 39 39 INFO: Distances between consecutive points in test subject's space are 12 10 9 8 Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_* Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 272.868 sec. Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from 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/usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/lh.slft_PP.bbr.trk INFO: Rejected 441 streamlines for straying off mask INFO: Rejected 78 streamlines for reversing direction INFO: Rejected 96 streamlines as length outliers INFO: Have 7279 total streamlines (min/mean/max length: 48/90/136) Processing pathway 17 of 18... Matching streamline ends INFO: Have 4575 non-truncated streamlines (min/mean/max length: 49/92/136) INFO: Center of mass of start points: (144+/-7, 132+/-6, 94+/-10) INFO: Center of mass of midpoints: (126+/-2, 96+/-4, 101+/-3) INFO: Center of mass of end points: (147+/-6, 84+/-13, 65+/-9) INFO: Split streamlines into 23 segments Computing path histograms INFO: Total streamline volume is 45496 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 102 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 13 INFO: Minimum allowable curvature at a dominant point is 0.0494031 INFO: Points where local peeks in curvature occur are 130 118 98 (curv = 0.112622) 125 87 100 (curv = 0.0939046) 128 81 94 (curv = 0.0846298) 135 81 74 (curv = 0.072545) INFO: Intermediate dominant points are 148 133 85 130 118 98 125 87 100 135 81 74 150 93 57 INFO: Final dominant points are 148 133 85 130 118 98 125 87 100 135 81 74 150 93 57 INFO: Selected control points are 148 133 85 131 117 99 127 87 100 133 82 74 150 93 57 INFO: Distances between consecutive points are 27 30 27 26 INFO: Selected control points in test subject's space are 90 73 36 83 63 39 81 50 34 84 52 22 91 60 17 INFO: Distances between consecutive points in test subject's space are 13 14 13 12 Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slft_PP_avg33_mni_bbr_* Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slft_PP_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 100.104 sec. Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/rh.slft_PP.bbr.trk INFO: Rejected 92 streamlines for straying off mask INFO: Rejected 16 streamlines for reversing direction INFO: Rejected 16 streamlines as length outliers INFO: Have 3016 total streamlines (min/mean/max length: 31/90/141) Processing pathway 18 of 18... Matching streamline ends INFO: Have 1662 non-truncated streamlines (min/mean/max length: 55/92/143) INFO: Center of mass of start points: (40+/-9, 135+/-8, 97+/-15) INFO: Center of mass of midpoints: (56+/-2, 96+/-3, 103+/-3) INFO: Center of mass of end points: (31+/-6, 81+/-9, 71+/-8) INFO: Split streamlines into 24 segments Computing path histograms INFO: Total streamline volume is 31806 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 99 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 13 INFO: Minimum allowable curvature at a dominant point is 0.0583709 INFO: Points where local peeks in curvature occur are 54 130 93 (curv = 0.149369) 57 99 102 (curv = 0.0967943) 53 88 98 (curv = 0.0688647) 51 83 91 (curv = 0.0608491) 46 80 80 (curv = 0.0640276) INFO: Intermediate dominant points are 32 137 82 54 130 93 57 99 102 46 80 80 27 83 70 INFO: Final dominant points are 32 137 82 54 130 93 57 99 102 46 80 80 27 83 70 WARN: Defaulting to equidistant control points INFO: Selected control points are 32 137 82 56 126 95 57 101 102 50 82 88 27 83 70 INFO: Distances between consecutive points are 29 26 25 29 INFO: Selected control points in test subject's space are 36 74 37 47 67 41 48 54 39 45 48 29 34 52 22 INFO: Distances between consecutive points in test subject's space are 14 13 12 14 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 93 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0544081 INFO: Points where local peeks in curvature occur are 56 126 95 (curv = 0.115336) 58 99 102 (curv = 0.108833) 52 87 98 (curv = 0.0917009) 51 82 87 (curv = 0.0588861) INFO: Intermediate dominant points are 42 138 83 56 126 95 58 99 102 52 87 98 29 83 70 INFO: Final dominant points are 42 138 83 56 126 95 58 99 102 52 87 98 29 83 70 WARN: Defaulting to equidistant control points INFO: Selected control points are 42 138 83 54 121 98 57 97 102 50 81 86 29 83 70 INFO: Distances between consecutive points are 26 25 24 26 INFO: Selected control points in test subject's space are 40 74 38 46 64 41 48 53 38 45 48 28 34 52 22 INFO: Distances between consecutive points in test subject's space are 12 12 12 13 WARN: Could not find satisfactory control point fit - try 2 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 93 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0507033 INFO: Points where local peeks in curvature occur are 53 120 99 (curv = 0.131558) 55 97 103 (curv = 0.0765911) 53 83 93 (curv = 0.0600204) 50 80 86 (curv = 0.0589787) 39 86 71 (curv = 0.0858641) INFO: Intermediate dominant points are 32 128 93 53 120 99 55 97 103 53 83 93 28 90 70 INFO: Final dominant points are 32 128 93 53 120 99 55 97 103 53 83 93 28 90 70 WARN: Defaulting to equidistant control points INFO: Selected control points are 32 128 93 53 117 100 55 94 102 47 80 80 28 90 70 INFO: Distances between consecutive points are 25 23 27 24 INFO: Selected control points in test subject's space are 36 68 40 46 62 41 47 51 37 43 49 26 34 55 24 INFO: Distances between consecutive points in test subject's space are 12 12 12 11 WARN: Could not find satisfactory control point fit - try 3 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 110 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 14 INFO: Minimum allowable curvature at a dominant point is 0.045208 INFO: Points where local peeks in curvature occur are 53 130 92 (curv = 0.0955001) 52 119 97 (curv = 0.0509654) 54 105 102 (curv = 0.0588573) 52 79 91 (curv = 0.099188) 48 78 80 (curv = 0.0708915) INFO: Intermediate dominant points are 31 142 82 53 130 92 54 105 102 52 79 91 26 77 70 INFO: Final dominant points are 31 142 82 53 130 92 54 105 102 52 79 91 26 77 70 WARN: Defaulting to equidistant control points INFO: Selected control points are 31 142 82 53 126 93 54 98 101 50 78 83 26 77 70 INFO: Distances between consecutive points are 29 29 27 27 INFO: Selected control points in test subject's space are 35 76 38 46 67 40 47 53 38 45 47 26 33 49 21 INFO: Distances between consecutive points in test subject's space are 14 14 14 13 WARN: Could not find satisfactory control point fit - try 4 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 90 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0498729 INFO: Points where local peeks in curvature occur are 53 119 100 (curv = 0.0848449) 54 100 104 (curv = 0.0786155) 53 82 92 (curv = 0.0664417) 47 80 79 (curv = 0.058139) INFO: Intermediate dominant points are 33 129 95 53 119 100 54 100 104 53 82 92 27 90 71 INFO: Final dominant points are 33 129 95 53 119 100 54 100 104 53 82 92 27 90 71 WARN: Defaulting to equidistant control points INFO: Selected control points are 33 129 95 53 116 100 55 94 102 48 80 82 27 90 71 INFO: Distances between consecutive points are 24 22 25 26 INFO: Selected control points in test subject's space are 36 68 41 46 61 41 47 51 37 44 48 26 33 55 24 INFO: Distances between consecutive points in test subject's space are 12 11 12 13 WARN: Could not find satisfactory control point fit - try 5 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 94 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0522413 INFO: Points where local peeks in curvature occur are 53 125 101 (curv = 0.0739886) 57 114 103 (curv = 0.0651575) 58 104 107 (curv = 0.132885) 47 82 92 (curv = 0.0806077) INFO: Intermediate dominant points are 34 139 103 53 125 101 58 104 107 47 82 92 27 77 70 INFO: Final dominant points are 34 139 103 53 125 101 58 104 107 47 82 92 27 77 70 WARN: Defaulting to equidistant control points INFO: Selected control points are 34 139 103 56 118 102 56 96 103 46 82 84 27 77 70 INFO: Distances between consecutive points are 30 22 26 24 INFO: Selected control points in test subject's space are 37 71 47 47 62 42 48 52 38 43 49 28 34 49 21 INFO: Distances between consecutive points in test subject's space are 14 11 12 11 WARN: Could not find satisfactory control point fit - try 6 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 96 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0519818 INFO: Points where local peeks in curvature occur are 52 126 99 (curv = 0.0651336) 57 115 102 (curv = 0.082237) 58 104 107 (curv = 0.128711) 48 82 93 (curv = 0.100992) INFO: Intermediate dominant points are 34 142 103 52 126 99 58 104 107 48 82 93 27 77 70 INFO: Final dominant points are 34 142 103 52 126 99 58 104 107 48 82 93 27 77 70 WARN: Defaulting to equidistant control points INFO: Selected control points are 34 142 103 55 122 100 57 99 105 46 82 88 27 77 70 INFO: Distances between consecutive points are 29 24 26 27 INFO: Selected control points in test subject's space are 37 72 47 47 64 42 48 53 40 43 48 29 34 49 21 INFO: Distances between consecutive points in test subject's space are 14 11 13 12 WARN: Could not find satisfactory control point fit - try 7 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 91 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.050069 INFO: Points where local peeks in curvature occur are 52 121 99 (curv = 0.130207) 54 98 103 (curv = 0.0745749) 53 83 93 (curv = 0.0644416) 46 81 77 (curv = 0.0586908) 42 84 72 (curv = 0.0606397) INFO: Intermediate dominant points are 31 128 93 52 121 99 54 98 103 53 83 93 28 90 70 INFO: Final dominant points are 31 128 93 52 121 99 54 98 103 53 83 93 28 90 70 WARN: Defaulting to equidistant control points INFO: Selected control points are 31 128 93 53 118 99 54 96 103 49 80 84 28 90 70 INFO: Distances between consecutive points are 25 22 25 27 INFO: Selected control points in test subject's space are 35 68 40 46 63 41 47 52 38 44 48 27 34 55 24 INFO: Distances between consecutive points in test subject's space are 12 11 12 13 WARN: Could not find satisfactory control point fit - try 8 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 90 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0494735 INFO: Points where local peeks in curvature occur are 51 121 99 (curv = 0.117745) 54 96 103 (curv = 0.0688114) 53 82 93 (curv = 0.0766333) 49 80 85 (curv = 0.0605107) INFO: Intermediate dominant points are 31 128 93 51 121 99 54 96 103 53 82 93 28 90 71 INFO: Final dominant points are 31 128 93 51 121 99 54 96 103 53 82 93 28 90 71 WARN: Defaulting to equidistant control points INFO: Selected control points are 31 128 93 53 118 100 54 95 103 48 80 83 28 90 71 INFO: Distances between consecutive points are 25 23 26 25 INFO: Selected control points in test subject's space are 35 68 40 46 62 41 47 52 38 44 48 27 34 55 24 INFO: Distances between consecutive points in test subject's space are 13 10 12 13 WARN: Could not find satisfactory control point fit - try 9 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 93 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0503332 INFO: Points where local peeks in curvature occur are 51 121 99 (curv = 0.0862622) 54 105 103 (curv = 0.0630755) 54 95 103 (curv = 0.0709973) 50 80 87 (curv = 0.0628879) 39 86 71 (curv = 0.0858641) INFO: Intermediate dominant points are 31 128 93 51 121 99 54 95 103 50 80 87 28 90 70 INFO: Final dominant points are 31 128 93 51 121 99 54 95 103 50 80 87 28 90 70 WARN: Defaulting to equidistant control points INFO: Selected control points are 31 128 93 53 116 100 54 94 102 47 80 80 28 90 70 INFO: Distances between consecutive points are 26 22 27 24 INFO: Selected control points in test subject's space are 35 68 40 46 61 41 47 51 37 43 49 26 34 55 24 INFO: Distances between consecutive points in test subject's space are 13 11 12 11 WARN: Could not find satisfactory control point fit - try 10 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 87 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0525215 INFO: Points where local peeks in curvature occur are 50 121 99 (curv = 0.0879324) 54 99 104 (curv = 0.0865024) 53 82 92 (curv = 0.0741171) 46 81 77 (curv = 0.0586908) 42 84 72 (curv = 0.0606397) INFO: Intermediate dominant points are 35 128 94 50 121 99 54 99 104 53 82 92 28 90 70 INFO: Final dominant points are 35 128 94 50 121 99 54 99 104 53 82 92 28 90 70 WARN: Defaulting to equidistant control points INFO: Selected control points are 35 128 94 53 115 100 54 94 102 48 80 83 28 90 70 INFO: Distances between consecutive points are 23 21 24 26 INFO: Selected control points in test subject's space are 37 68 41 46 61 41 47 51 37 44 48 27 34 55 24 INFO: Distances between consecutive points in test subject's space are 11 11 11 13 WARN: Could not find satisfactory control point fit - try 11 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 86 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0543583 INFO: Points where local peeks in curvature occur are 53 115 102 (curv = 0.101316) 53 106 104 (curv = 0.0612415) 56 96 104 (curv = 0.0706371) 56 91 103 (curv = 0.060168) 54 85 101 (curv = 0.0837136) 53 80 91 (curv = 0.0613242) INFO: Intermediate dominant points are 33 129 101 53 115 102 54 85 101 52 80 83 33 75 75 INFO: Final dominant points are 33 129 101 53 115 102 54 85 101 44 82 73 33 75 75 WARN: Defaulting to equidistant control points INFO: Selected control points are 33 129 101 53 114 102 56 92 103 52 80 84 33 75 75 INFO: Distances between consecutive points are 25 22 23 22 INFO: Selected control points in test subject's space are 36 67 44 46 60 41 48 50 38 46 48 27 36 47 23 INFO: Distances between consecutive points in test subject's space are 13 11 11 11 WARN: Could not find satisfactory control point fit - try 12 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 81 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0522708 INFO: Points where local peeks in curvature occur are 52 118 100 (curv = 0.0976288) 53 100 104 (curv = 0.0762681) 54 97 103 (curv = 0.0775172) 53 83 93 (curv = 0.068704) 50 80 86 (curv = 0.0639931) INFO: Intermediate dominant points are 35 128 94 52 118 100 54 97 103 53 83 93 32 90 69 INFO: Final dominant points are 35 128 94 52 118 100 54 97 103 53 83 93 32 90 69 WARN: Defaulting to equidistant control points INFO: Selected control points are 35 128 94 53 115 100 54 95 103 49 80 84 32 90 69 INFO: Distances between consecutive points are 23 20 25 25 INFO: Selected control points in test subject's space are 37 68 41 46 61 41 47 52 38 44 48 27 36 55 23 INFO: Distances between consecutive points in test subject's space are 11 10 12 11 WARN: Could not find satisfactory control point fit - try 13 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 89 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0509719 INFO: Points where local peeks in curvature occur are 52 117 101 (curv = 0.106241) 56 90 103 (curv = 0.0762605) 53 80 91 (curv = 0.051943) 53 80 85 (curv = 0.0567582) 49 80 78 (curv = 0.0531748) INFO: Intermediate dominant points are 33 129 101 52 117 101 56 90 103 49 80 78 33 76 75 INFO: Final dominant points are 33 129 101 52 117 101 56 90 103 49 80 78 33 76 75 WARN: Defaulting to equidistant control points INFO: Selected control points are 33 129 101 54 114 102 57 91 103 52 80 84 33 76 75 INFO: Distances between consecutive points are 26 23 23 21 INFO: Selected control points in test subject's space are 36 67 44 46 60 41 48 50 37 46 48 27 36 48 23 INFO: Distances between consecutive points in test subject's space are 13 11 10 11 WARN: Could not find satisfactory control point fit - try 14 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 89 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0523631 INFO: Points where local peeks in curvature occur are 52 117 101 (curv = 0.112716) 57 95 104 (curv = 0.0676929) 55 87 102 (curv = 0.0762004) 53 81 94 (curv = 0.0786657) 52 80 85 (curv = 0.0559462) INFO: Intermediate dominant points are 31 131 99 52 117 101 57 95 104 53 81 94 34 78 74 INFO: Final dominant points are 31 131 99 52 117 101 57 95 104 53 81 94 34 78 74 WARN: Defaulting to equidistant control points INFO: Selected control points are 31 131 99 53 116 102 57 92 103 52 80 85 34 78 74 INFO: Distances between consecutive points are 27 24 22 21 INFO: Selected control points in test subject's space are 35 68 44 46 61 42 48 50 37 46 48 28 37 49 23 INFO: Distances between consecutive points in test subject's space are 13 12 9 10 WARN: Could not find satisfactory control point fit - try 15 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 87 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0508087 INFO: Points where local peeks in curvature occur are 53 115 102 (curv = 0.0873428) 57 95 104 (curv = 0.0760012) 55 85 101 (curv = 0.103893) 53 80 91 (curv = 0.0543973) 52 80 85 (curv = 0.0536442) INFO: Intermediate dominant points are 31 128 99 53 115 102 55 85 101 52 80 85 34 78 74 INFO: Final dominant points are 31 128 99 53 115 102 55 85 101 52 80 85 34 78 74 WARN: Defaulting to equidistant control points INFO: Selected control points are 31 128 99 52 116 101 57 94 104 53 80 87 34 78 74 INFO: Distances between consecutive points are 24 23 22 23 INFO: Selected control points in test subject's space are 35 67 43 45 61 41 48 51 38 46 48 29 37 49 23 INFO: Distances between consecutive points in test subject's space are 12 11 10 11 WARN: Could not find satisfactory control point fit - try 16 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 87 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0511504 INFO: Points where local peeks in curvature occur are 53 115 102 (curv = 0.0883091) 57 95 104 (curv = 0.0762743) 55 85 101 (curv = 0.077328) 52 80 83 (curv = 0.0726445) INFO: Intermediate dominant points are 31 128 99 53 115 102 55 85 101 52 80 83 34 78 74 INFO: Final dominant points are 31 128 99 53 115 102 55 85 101 52 80 83 34 78 74 WARN: Defaulting to equidistant control points INFO: Selected control points are 31 128 99 52 116 101 57 94 104 52 80 86 34 78 74 INFO: Distances between consecutive points are 24 23 23 22 INFO: Selected control points in test subject's space are 35 67 43 45 61 41 48 51 38 46 48 28 37 49 23 INFO: Distances between consecutive points in test subject's space are 12 11 11 10 WARN: Could not find satisfactory control point fit - try 17 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 84 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0522221 INFO: Points where local peeks in curvature occur are 51 118 101 (curv = 0.08957) 53 106 104 (curv = 0.0533716) 56 95 104 (curv = 0.0627361) 56 91 103 (curv = 0.0658541) 54 82 96 (curv = 0.0734739) 49 81 79 (curv = 0.054201) INFO: Intermediate dominant points are 33 129 101 51 118 101 54 82 96 49 81 79 34 78 74 INFO: Final dominant points are 33 129 101 51 118 101 54 82 96 49 81 79 34 78 74 INFO: Selected control points are 33 129 101 51 117 102 55 83 99 49 82 77 34 78 74 INFO: Distances between consecutive points are 22 34 23 16 INFO: Selected control points in test subject's space are 36 67 44 45 62 42 47 47 34 44 50 25 37 49 23 INFO: Distances between consecutive points in test subject's space are 10 17 10 7 Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slft_PP_avg33_mni_bbr_* Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slft_PP_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 33.847 sec. dmri_train done #------------------------------------- trac-preproc finished without error at Wed Apr 24 22:40:06 EDT 2013 New invocation of trac-all Thu Apr 25 09:53:59 EDT 2013 /autofs/space/pluto_001/users/ayendiki/tract /usr/local/freesurfer/dev/bin/trac-all -c dmrirc.tutorial -path Subject elmo.2005 SUBJECTS_DIR /space/freesurfer/subjects/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/dev Actual FREESURFER_HOME /autofs/cluster/freesurfer/centos6_x86_64/dev build-stamp.txt: freesurfer-Linux-centos6_x86_64-dev-20130424 ayendiki launchpad Linux launchpad 2.6.32-279.22.1.el6.x86_64 #1 SMP Wed Feb 6 03:10:46 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize unlimited coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 8192 memorylocked 64 kbytes maxproc 256703 total used free shared buffers cached Mem: 32877832 14102036 18775796 0 620208 8696692 -/+ buffers/cache: 4785136 28092696 Swap: 67108848 22796 67086052 ######################################## Program versions: $Id: trac-all,v 1.47 2013/02/23 01:59:42 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2013/04/25-13:54:00-GMT BuildTimeStamp: Apr 24 2013 20:05:32 CVS: $Id: mri_convert.c,v 1.203 2012/12/06 21:44:17 greve Exp $ User: ayendiki Machine: launchpad Platform: Linux PlatformVersion: 2.6.32-279.22.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 FLIRT version 6.0 $Id: bbregister,v 1.56 2013/03/25 18:04:29 greve Exp $ $Id: mri_cvs_register,v 1.45 2013/02/07 22:48:48 lzollei Exp $ ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2013/04/25-13:54:00-GMT BuildTimeStamp: Apr 24 2013 20:05:32 CVS: User: ayendiki Machine: launchpad Platform: Linux PlatformVersion: 2.6.32-279.22.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2013/04/25-13:54:01-GMT BuildTimeStamp: Apr 24 2013 20:05:32 CVS: User: ayendiki Machine: launchpad Platform: Linux PlatformVersion: 2.6.32-279.22.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2013/04/25-13:54:02-GMT BuildTimeStamp: Apr 24 2013 20:05:32 CVS: User: ayendiki Machine: launchpad Platform: Linux PlatformVersion: 2.6.32-279.22.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2013/04/25-13:54:03-GMT BuildTimeStamp: Apr 24 2013 20:05:32 CVS: User: ayendiki Machine: launchpad Platform: Linux PlatformVersion: 2.6.32-279.22.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 New invocation of trac-paths ayendiki compute-0-29 Linux compute-0-29 2.6.32-279.22.1.el6.x86_64 #1 SMP Wed Feb 6 03:10:46 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 10240 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse 7340032 kbytes descriptors 32768 memorylocked 64 kbytes maxproc 256703 total used free shared buffers cached Mem: 32877836 9611700 23266136 0 186232 883604 -/+ buffers/cache: 8541864 24335972 Swap: 67108856 130616 66978240 #------------------------------------- /usr/local/freesurfer/dev/bin/trac-paths #------------------------------------- #@# Path reconstruction Thu Apr 25 09:54:09 EDT 2013 rm -rf /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.cst_AS_avg33_mni_bbr rm -rf /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.cst_AS_avg33_mni_bbr rm -rf /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.ilf_AS_avg33_mni_bbr rm -rf /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.ilf_AS_avg33_mni_bbr rm -rf /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.unc_AS_avg33_mni_bbr rm -rf /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.unc_AS_avg33_mni_bbr rm -rf /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/fmajor_PP_avg33_mni_bbr rm -rf /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/fminor_PP_avg33_mni_bbr rm -rf /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.atr_PP_avg33_mni_bbr rm -rf /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.atr_PP_avg33_mni_bbr rm -rf /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.ccg_PP_avg33_mni_bbr rm -rf /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.ccg_PP_avg33_mni_bbr rm -rf /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.cab_PP_avg33_mni_bbr rm -rf /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.cab_PP_avg33_mni_bbr rm -rf /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.slfp_PP_avg33_mni_bbr rm -rf /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.slfp_PP_avg33_mni_bbr rm -rf /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.slft_PP_avg33_mni_bbr rm -rf /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.slft_PP_avg33_mni_bbr /usr/local/freesurfer/dev/bin/dmri_paths --outdir /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.cst_AS_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.cst_AS_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.ilf_AS_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.ilf_AS_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.unc_AS_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.unc_AS_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/fmajor_PP_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/fminor_PP_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.atr_PP_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.atr_PP_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.ccg_PP_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.ccg_PP_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.cab_PP_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.cab_PP_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.slfp_PP_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.slfp_PP_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.slft_PP_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.slft_PP_avg33_mni_bbr --dwi /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi.nii.gz --grad /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/bvecs --bval /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/bvals --mask /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/aparc+aseg_mask.bbr.nii.gz --bpdir /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri.bedpostX --ntr 2 --fmin 0.05 --roi1 /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.unc_AS_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.unc_AS_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fmajor_PP_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fminor_PP_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cab_PP_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cab_PP_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slft_PP_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slft_PP_avg33_mni_bbr_end1_dil.nii.gz --roi2 /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cst_AS_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.unc_AS_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.unc_AS_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fmajor_PP_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fminor_PP_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cab_PP_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cab_PP_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slft_PP_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slft_PP_avg33_mni_bbr_end2_dil.nii.gz --reg /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/diff2mni.bbr.mat --init /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_4.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_4.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5.txt --nprior /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all 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/space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all --lprior /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all 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/space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all --seg /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/aparc+aseg.nii.gz --nb 200 --ns 7500 --nu 0 --nk 5 --sdp /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_4_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_4_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5_std.txt cwd /autofs/space/pluto_001/users/ayendiki/tract cmdline /usr/local/freesurfer/dev/bin/dmri_paths --outdir /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.cst_AS_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.cst_AS_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.ilf_AS_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.ilf_AS_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.unc_AS_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.unc_AS_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/fmajor_PP_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/fminor_PP_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.atr_PP_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.atr_PP_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.ccg_PP_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.ccg_PP_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.cab_PP_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.cab_PP_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.slfp_PP_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.slfp_PP_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.slft_PP_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.slft_PP_avg33_mni_bbr --dwi /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi.nii.gz --grad /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/bvecs --bval /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/bvals --mask /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/aparc+aseg_mask.bbr.nii.gz --bpdir /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri.bedpostX --ntr 2 --fmin 0.05 --roi1 /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.unc_AS_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.unc_AS_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fmajor_PP_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fminor_PP_avg33_mni_bbr_end1_dil.nii.gz 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/space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slft_PP_avg33_mni_bbr_end1_dil.nii.gz --roi2 /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cst_AS_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.unc_AS_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.unc_AS_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fmajor_PP_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fminor_PP_avg33_mni_bbr_end2_dil.nii.gz 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/space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slft_PP_avg33_mni_bbr_end2_dil.nii.gz --reg /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/diff2mni.bbr.mat --init /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_4.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_4.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5.txt 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/space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all --lprior /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all 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/space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all --seg /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/aparc+aseg.nii.gz --nb 200 --ns 7500 --nu 0 --nk 5 --sdp /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_4_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_4_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5_std.txt sysname Linux hostname compute-0-29 machine x86_64 user ayendiki Output directory: /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.cst_AS_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.cst_AS_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.ilf_AS_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.ilf_AS_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.unc_AS_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.unc_AS_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/fmajor_PP_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/fminor_PP_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.atr_PP_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.atr_PP_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.ccg_PP_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.ccg_PP_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.cab_PP_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.cab_PP_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.slfp_PP_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.slfp_PP_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.slft_PP_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.slft_PP_avg33_mni_bbr DWIs: /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi.nii.gz Gradients: /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/bvecs B-values: /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/bvals Mask: /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/aparc+aseg_mask.bbr.nii.gz BEDPOST directory: /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri.bedpostX Max number of tracts per voxel: 2 Tract volume fraction threshold: 0.05 Initial control point file: /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_4.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_4.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5.txt End ROI 1: /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.unc_AS_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.unc_AS_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fmajor_PP_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fminor_PP_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cab_PP_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cab_PP_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slft_PP_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slft_PP_avg33_mni_bbr_end1_dil.nii.gz End ROI 2: /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cst_AS_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.unc_AS_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.unc_AS_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fmajor_PP_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fminor_PP_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cab_PP_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cab_PP_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slft_PP_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slft_PP_avg33_mni_bbr_end2_dil.nii.gz Neighbor aseg prior: /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all Neighbor aseg label ID list: /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all Neighbor aseg prior set: 14 Local aseg prior: /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all Local aseg label ID list: /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all Local aseg prior set: 15 Segmentation map: /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/aparc+aseg.nii.gz DWI-to-atlas affine registration: /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/diff2mni.bbr.mat Number of burn-in samples: 200 Number of post-burn-in samples: 7500 Keep every: 5-th sample Update proposal every: 0-th sample Initial proposal SD file: /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_4_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_4_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5_std.txt Loading DWIs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dwi.nii.gz Loading mask from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/aparc+aseg_mask.bbr.nii.gz Loading BEDPOST parameter samples from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri.bedpostX Loading b-values from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/bvals Loading gradients from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/bvecs INFO: Found 10 baseline images (b = 0) out of a total of 70 frames INFO: Found 177243 voxels in brain mask INFO: Resolution of DWI space relative to base space is (1, 1, 1) Loading atlas reference volume from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz Loading affine registration from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/xfms/diff2mni.bbr.mat Loading segmentation map from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/aparc+aseg.nii.gz Creating output directory /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.cst_AS_avg33_mni_bbr Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end2_dil.nii.gz Loading control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6_std.txt Processing pathway 1 of 18... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.cst_AS_avg33_mni_bbr Done in 146.213 sec. Creating output directory /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.cst_AS_avg33_mni_bbr Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cst_AS_avg33_mni_bbr_end2_dil.nii.gz Loading control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6_std.txt Processing pathway 2 of 18... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 4 INFO: Attempting to perturb control points INFO: Success after 1 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.cst_AS_avg33_mni_bbr Done in 138.616 sec. Creating output directory /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.ilf_AS_avg33_mni_bbr Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_end1_dil.nii.gz Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_end2_dil.nii.gz Loading control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt Processing pathway 3 of 18... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.ilf_AS_avg33_mni_bbr Done in 119.642 sec. Creating output directory /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.ilf_AS_avg33_mni_bbr Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_end1_dil.nii.gz Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_end2_dil.nii.gz Loading control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt Processing pathway 4 of 18... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.ilf_AS_avg33_mni_bbr Done in 126.567 sec. Creating output directory /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.unc_AS_avg33_mni_bbr Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.unc_AS_avg33_mni_bbr_end1_dil.nii.gz Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.unc_AS_avg33_mni_bbr_end2_dil.nii.gz Loading control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5_std.txt Processing pathway 5 of 18... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.unc_AS_avg33_mni_bbr Done in 97.793 sec. Creating output directory /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.unc_AS_avg33_mni_bbr Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.unc_AS_avg33_mni_bbr_end1_dil.nii.gz Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.unc_AS_avg33_mni_bbr_end2_dil.nii.gz Loading control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5_std.txt Processing pathway 6 of 18... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 2 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 2 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 2 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 2 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 2 INFO: Attempting to perturb control points INFO: Reverting to original control points Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.unc_AS_avg33_mni_bbr Done in 88.149 sec. Creating output directory /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/fmajor_PP_avg33_mni_bbr Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fmajor_PP_avg33_mni_bbr_end1_dil.nii.gz Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fmajor_PP_avg33_mni_bbr_end2_dil.nii.gz Loading control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7_std.txt Processing pathway 7 of 18... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 2 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 2 INFO: Attempting to perturb control points INFO: Reverting to original control points Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/fmajor_PP_avg33_mni_bbr Done in 196.703 sec. Creating output directory /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/fminor_PP_avg33_mni_bbr Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fminor_PP_avg33_mni_bbr_end1_dil.nii.gz Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fminor_PP_avg33_mni_bbr_end2_dil.nii.gz Loading control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5_std.txt Processing pathway 8 of 18... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 3 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 3 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 3 INFO: Attempting to perturb control points INFO: Success after 4 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/fminor_PP_avg33_mni_bbr Done in 84.538 sec. Creating output directory /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.atr_PP_avg33_mni_bbr Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz Loading control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5_std.txt Processing pathway 9 of 18... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.atr_PP_avg33_mni_bbr Done in 109.347 sec. Creating output directory /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.atr_PP_avg33_mni_bbr Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz Loading control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5_std.txt Processing pathway 10 of 18... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Success after 1 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.atr_PP_avg33_mni_bbr Done in 94.188 sec. Creating output directory /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.ccg_PP_avg33_mni_bbr Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_end1_dil.nii.gz Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_end2_dil.nii.gz Loading control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_5.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_5_std.txt Processing pathway 11 of 18... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 3 INFO: Attempting to perturb control points INFO: Success after 1 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.ccg_PP_avg33_mni_bbr Done in 133.956 sec. Creating output directory /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.ccg_PP_avg33_mni_bbr Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_end1_dil.nii.gz Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_end2_dil.nii.gz Loading control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_5.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_5_std.txt Processing pathway 12 of 18... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 4 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 4 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 4 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 4 INFO: Attempting to perturb control points INFO: Success after 4 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.ccg_PP_avg33_mni_bbr Done in 111.093 sec. Creating output directory /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.cab_PP_avg33_mni_bbr Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cab_PP_avg33_mni_bbr_end1_dil.nii.gz Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cab_PP_avg33_mni_bbr_end2_dil.nii.gz Loading control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_4.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_4_std.txt Processing pathway 13 of 18... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.cab_PP_avg33_mni_bbr Done in 40.295 sec. Creating output directory /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.cab_PP_avg33_mni_bbr Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cab_PP_avg33_mni_bbr_end1_dil.nii.gz Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cab_PP_avg33_mni_bbr_end2_dil.nii.gz Loading control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_4.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_4_std.txt Processing pathway 14 of 18... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 1 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 1 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 1 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 1 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 1 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 1 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 1 INFO: Attempting to perturb control points INFO: Success after 7 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.cab_PP_avg33_mni_bbr Done in 45.576 sec. Creating output directory /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.slfp_PP_avg33_mni_bbr Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_end1_dil.nii.gz Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_end2_dil.nii.gz Loading control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt Processing pathway 15 of 18... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.slfp_PP_avg33_mni_bbr Done in 109.661 sec. Creating output directory /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.slfp_PP_avg33_mni_bbr Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_end1_dil.nii.gz Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_end2_dil.nii.gz Loading control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt Processing pathway 16 of 18... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.slfp_PP_avg33_mni_bbr Done in 91.796 sec. Creating output directory /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.slft_PP_avg33_mni_bbr Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slft_PP_avg33_mni_bbr_end1_dil.nii.gz Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slft_PP_avg33_mni_bbr_end2_dil.nii.gz Loading control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5_std.txt Processing pathway 17 of 18... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.slft_PP_avg33_mni_bbr Done in 132.313 sec. Creating output directory /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.slft_PP_avg33_mni_bbr Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slft_PP_avg33_mni_bbr_end1_dil.nii.gz Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slft_PP_avg33_mni_bbr_end2_dil.nii.gz Loading control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5_std.txt Processing pathway 18 of 18... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 4 INFO: Attempting to perturb control points INFO: Success after 1 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.slft_PP_avg33_mni_bbr Done in 116.903 sec. dmri_paths done /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.cst_AS_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dtifit --path lh.cst --subj elmo.2005 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.cst_AS_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.cst_AS_avg33_mni_bbr/pathstats.byvoxel.txt cwd /autofs/space/pluto_001/users/ayendiki/tract cmdline /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.cst_AS_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dtifit --path lh.cst --subj elmo.2005 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.cst_AS_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.cst_AS_avg33_mni_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-29 machine x86_64 user ayendiki Input tracula directory: /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.cst_AS_avg33_mni_bbr Input DTI fit base: /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dtifit Pathway name: lh.cst Subject name: elmo.2005 Output file for overall measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.cst_AS_avg33_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.cst_AS_avg33_mni_bbr/pathstats.byvoxel.txt Computing statistics on /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.cst_AS_avg33_mni_bbr... Loading spline control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.cst_AS_avg33_mni_bbr/cpts.map.txt Loading spline mask from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.cst_AS_avg33_mni_bbr/path.pd.nii.gz Done in 0.918 sec. dmri_pathstats done /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.cst_AS_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dtifit --path rh.cst --subj elmo.2005 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.cst_AS_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.cst_AS_avg33_mni_bbr/pathstats.byvoxel.txt cwd /autofs/space/pluto_001/users/ayendiki/tract cmdline /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.cst_AS_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dtifit --path rh.cst --subj elmo.2005 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.cst_AS_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.cst_AS_avg33_mni_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-29 machine x86_64 user ayendiki Input tracula directory: /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.cst_AS_avg33_mni_bbr Input DTI fit base: /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dtifit Pathway name: rh.cst Subject name: elmo.2005 Output file for overall measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.cst_AS_avg33_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.cst_AS_avg33_mni_bbr/pathstats.byvoxel.txt Computing statistics on /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.cst_AS_avg33_mni_bbr... Loading spline control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.cst_AS_avg33_mni_bbr/cpts.map.txt Loading spline mask from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.cst_AS_avg33_mni_bbr/path.pd.nii.gz Done in 0.559 sec. dmri_pathstats done /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.ilf_AS_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dtifit --path lh.ilf --subj elmo.2005 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.ilf_AS_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.ilf_AS_avg33_mni_bbr/pathstats.byvoxel.txt cwd /autofs/space/pluto_001/users/ayendiki/tract cmdline /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.ilf_AS_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dtifit --path lh.ilf --subj elmo.2005 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.ilf_AS_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.ilf_AS_avg33_mni_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-29 machine x86_64 user ayendiki Input tracula directory: /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.ilf_AS_avg33_mni_bbr Input DTI fit base: /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dtifit Pathway name: lh.ilf Subject name: elmo.2005 Output file for overall measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.ilf_AS_avg33_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.ilf_AS_avg33_mni_bbr/pathstats.byvoxel.txt Computing statistics on /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.ilf_AS_avg33_mni_bbr... Loading spline control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.ilf_AS_avg33_mni_bbr/cpts.map.txt Loading spline mask from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.ilf_AS_avg33_mni_bbr/path.pd.nii.gz Done in 0.553 sec. dmri_pathstats done /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.ilf_AS_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dtifit --path rh.ilf --subj elmo.2005 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.ilf_AS_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.ilf_AS_avg33_mni_bbr/pathstats.byvoxel.txt cwd /autofs/space/pluto_001/users/ayendiki/tract cmdline /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.ilf_AS_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dtifit --path rh.ilf --subj elmo.2005 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.ilf_AS_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.ilf_AS_avg33_mni_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-29 machine x86_64 user ayendiki Input tracula directory: /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.ilf_AS_avg33_mni_bbr Input DTI fit base: /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dtifit Pathway name: rh.ilf Subject name: elmo.2005 Output file for overall measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.ilf_AS_avg33_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.ilf_AS_avg33_mni_bbr/pathstats.byvoxel.txt Computing statistics on /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.ilf_AS_avg33_mni_bbr... Loading spline control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.ilf_AS_avg33_mni_bbr/cpts.map.txt Loading spline mask from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.ilf_AS_avg33_mni_bbr/path.pd.nii.gz Done in 0.549 sec. dmri_pathstats done /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.unc_AS_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dtifit --path lh.unc --subj elmo.2005 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.unc_AS_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.unc_AS_avg33_mni_bbr/pathstats.byvoxel.txt cwd /autofs/space/pluto_001/users/ayendiki/tract cmdline /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.unc_AS_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dtifit --path lh.unc --subj elmo.2005 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.unc_AS_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.unc_AS_avg33_mni_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-29 machine x86_64 user ayendiki Input tracula directory: /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.unc_AS_avg33_mni_bbr Input DTI fit base: /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dtifit Pathway name: lh.unc Subject name: elmo.2005 Output file for overall measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.unc_AS_avg33_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.unc_AS_avg33_mni_bbr/pathstats.byvoxel.txt Computing statistics on /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.unc_AS_avg33_mni_bbr... Loading spline control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.unc_AS_avg33_mni_bbr/cpts.map.txt Loading spline mask from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.unc_AS_avg33_mni_bbr/path.pd.nii.gz Done in 0.548 sec. dmri_pathstats done /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.unc_AS_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dtifit --path rh.unc --subj elmo.2005 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.unc_AS_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.unc_AS_avg33_mni_bbr/pathstats.byvoxel.txt cwd /autofs/space/pluto_001/users/ayendiki/tract cmdline /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.unc_AS_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dtifit --path rh.unc --subj elmo.2005 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.unc_AS_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.unc_AS_avg33_mni_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-29 machine x86_64 user ayendiki Input tracula directory: /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.unc_AS_avg33_mni_bbr Input DTI fit base: /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dtifit Pathway name: rh.unc Subject name: elmo.2005 Output file for overall measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.unc_AS_avg33_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.unc_AS_avg33_mni_bbr/pathstats.byvoxel.txt Computing statistics on /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.unc_AS_avg33_mni_bbr... Loading spline control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.unc_AS_avg33_mni_bbr/cpts.map.txt Loading spline mask from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.unc_AS_avg33_mni_bbr/path.pd.nii.gz Done in 0.548 sec. dmri_pathstats done /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/fmajor_PP_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dtifit --path fmajor --subj elmo.2005 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/fmajor_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/fmajor_PP_avg33_mni_bbr/pathstats.byvoxel.txt cwd /autofs/space/pluto_001/users/ayendiki/tract cmdline /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/fmajor_PP_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dtifit --path fmajor --subj elmo.2005 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/fmajor_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/fmajor_PP_avg33_mni_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-29 machine x86_64 user ayendiki Input tracula directory: /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/fmajor_PP_avg33_mni_bbr Input DTI fit base: /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dtifit Pathway name: fmajor Subject name: elmo.2005 Output file for overall measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/fmajor_PP_avg33_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/fmajor_PP_avg33_mni_bbr/pathstats.byvoxel.txt Computing statistics on /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/fmajor_PP_avg33_mni_bbr... Loading spline control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/fmajor_PP_avg33_mni_bbr/cpts.map.txt Loading spline mask from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/fmajor_PP_avg33_mni_bbr/path.pd.nii.gz Done in 0.562 sec. dmri_pathstats done /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/fminor_PP_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dtifit --path fminor --subj elmo.2005 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/fminor_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/fminor_PP_avg33_mni_bbr/pathstats.byvoxel.txt cwd /autofs/space/pluto_001/users/ayendiki/tract cmdline /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/fminor_PP_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dtifit --path fminor --subj elmo.2005 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/fminor_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/fminor_PP_avg33_mni_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-29 machine x86_64 user ayendiki Input tracula directory: /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/fminor_PP_avg33_mni_bbr Input DTI fit base: /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dtifit Pathway name: fminor Subject name: elmo.2005 Output file for overall measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/fminor_PP_avg33_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/fminor_PP_avg33_mni_bbr/pathstats.byvoxel.txt Computing statistics on /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/fminor_PP_avg33_mni_bbr... Loading spline control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/fminor_PP_avg33_mni_bbr/cpts.map.txt Loading spline mask from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/fminor_PP_avg33_mni_bbr/path.pd.nii.gz Done in 0.546 sec. dmri_pathstats done /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.atr_PP_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dtifit --path lh.atr --subj elmo.2005 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.atr_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.atr_PP_avg33_mni_bbr/pathstats.byvoxel.txt cwd /autofs/space/pluto_001/users/ayendiki/tract cmdline /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.atr_PP_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dtifit --path lh.atr --subj elmo.2005 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.atr_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.atr_PP_avg33_mni_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-29 machine x86_64 user ayendiki Input tracula directory: /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.atr_PP_avg33_mni_bbr Input DTI fit base: /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dtifit Pathway name: lh.atr Subject name: elmo.2005 Output file for overall measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.atr_PP_avg33_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.atr_PP_avg33_mni_bbr/pathstats.byvoxel.txt Computing statistics on /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.atr_PP_avg33_mni_bbr... Loading spline control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.atr_PP_avg33_mni_bbr/cpts.map.txt Loading spline mask from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.atr_PP_avg33_mni_bbr/path.pd.nii.gz Done in 0.544 sec. dmri_pathstats done /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.atr_PP_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dtifit --path rh.atr --subj elmo.2005 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.atr_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.atr_PP_avg33_mni_bbr/pathstats.byvoxel.txt cwd /autofs/space/pluto_001/users/ayendiki/tract cmdline /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.atr_PP_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dtifit --path rh.atr --subj elmo.2005 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.atr_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.atr_PP_avg33_mni_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-29 machine x86_64 user ayendiki Input tracula directory: /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.atr_PP_avg33_mni_bbr Input DTI fit base: /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dtifit Pathway name: rh.atr Subject name: elmo.2005 Output file for overall measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.atr_PP_avg33_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.atr_PP_avg33_mni_bbr/pathstats.byvoxel.txt Computing statistics on /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.atr_PP_avg33_mni_bbr... Loading spline control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.atr_PP_avg33_mni_bbr/cpts.map.txt Loading spline mask from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.atr_PP_avg33_mni_bbr/path.pd.nii.gz Done in 0.552 sec. dmri_pathstats done /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.ccg_PP_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dtifit --path lh.ccg --subj elmo.2005 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.ccg_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.ccg_PP_avg33_mni_bbr/pathstats.byvoxel.txt cwd /autofs/space/pluto_001/users/ayendiki/tract cmdline /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.ccg_PP_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dtifit --path lh.ccg --subj elmo.2005 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.ccg_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.ccg_PP_avg33_mni_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-29 machine x86_64 user ayendiki Input tracula directory: /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.ccg_PP_avg33_mni_bbr Input DTI fit base: /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dtifit Pathway name: lh.ccg Subject name: elmo.2005 Output file for overall measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.ccg_PP_avg33_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.ccg_PP_avg33_mni_bbr/pathstats.byvoxel.txt Computing statistics on /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.ccg_PP_avg33_mni_bbr... Loading spline control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.ccg_PP_avg33_mni_bbr/cpts.map.txt Loading spline mask from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.ccg_PP_avg33_mni_bbr/path.pd.nii.gz Done in 0.566 sec. dmri_pathstats done /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.ccg_PP_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dtifit --path rh.ccg --subj elmo.2005 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.ccg_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.ccg_PP_avg33_mni_bbr/pathstats.byvoxel.txt cwd /autofs/space/pluto_001/users/ayendiki/tract cmdline /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.ccg_PP_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dtifit --path rh.ccg --subj elmo.2005 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.ccg_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.ccg_PP_avg33_mni_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-29 machine x86_64 user ayendiki Input tracula directory: /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.ccg_PP_avg33_mni_bbr Input DTI fit base: /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dtifit Pathway name: rh.ccg Subject name: elmo.2005 Output file for overall measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.ccg_PP_avg33_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.ccg_PP_avg33_mni_bbr/pathstats.byvoxel.txt Computing statistics on /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.ccg_PP_avg33_mni_bbr... Loading spline control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.ccg_PP_avg33_mni_bbr/cpts.map.txt Loading spline mask from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.ccg_PP_avg33_mni_bbr/path.pd.nii.gz Done in 0.578 sec. dmri_pathstats done /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.cab_PP_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dtifit --path lh.cab --subj elmo.2005 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.cab_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.cab_PP_avg33_mni_bbr/pathstats.byvoxel.txt cwd /autofs/space/pluto_001/users/ayendiki/tract cmdline /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.cab_PP_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dtifit --path lh.cab --subj elmo.2005 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.cab_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.cab_PP_avg33_mni_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-29 machine x86_64 user ayendiki Input tracula directory: /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.cab_PP_avg33_mni_bbr Input DTI fit base: /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dtifit Pathway name: lh.cab Subject name: elmo.2005 Output file for overall measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.cab_PP_avg33_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.cab_PP_avg33_mni_bbr/pathstats.byvoxel.txt Computing statistics on /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.cab_PP_avg33_mni_bbr... Loading spline control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.cab_PP_avg33_mni_bbr/cpts.map.txt Loading spline mask from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.cab_PP_avg33_mni_bbr/path.pd.nii.gz Done in 0.534 sec. dmri_pathstats done /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.cab_PP_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dtifit --path rh.cab --subj elmo.2005 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.cab_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.cab_PP_avg33_mni_bbr/pathstats.byvoxel.txt cwd /autofs/space/pluto_001/users/ayendiki/tract cmdline /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.cab_PP_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dtifit --path rh.cab --subj elmo.2005 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.cab_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.cab_PP_avg33_mni_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-29 machine x86_64 user ayendiki Input tracula directory: /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.cab_PP_avg33_mni_bbr Input DTI fit base: /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dtifit Pathway name: rh.cab Subject name: elmo.2005 Output file for overall measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.cab_PP_avg33_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.cab_PP_avg33_mni_bbr/pathstats.byvoxel.txt Computing statistics on /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.cab_PP_avg33_mni_bbr... Loading spline control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.cab_PP_avg33_mni_bbr/cpts.map.txt Loading spline mask from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.cab_PP_avg33_mni_bbr/path.pd.nii.gz Done in 0.531 sec. dmri_pathstats done /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.slfp_PP_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dtifit --path lh.slfp --subj elmo.2005 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.slfp_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.slfp_PP_avg33_mni_bbr/pathstats.byvoxel.txt cwd /autofs/space/pluto_001/users/ayendiki/tract cmdline /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.slfp_PP_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dtifit --path lh.slfp --subj elmo.2005 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.slfp_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.slfp_PP_avg33_mni_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-29 machine x86_64 user ayendiki Input tracula directory: /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.slfp_PP_avg33_mni_bbr Input DTI fit base: /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dtifit Pathway name: lh.slfp Subject name: elmo.2005 Output file for overall measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.slfp_PP_avg33_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.slfp_PP_avg33_mni_bbr/pathstats.byvoxel.txt Computing statistics on /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.slfp_PP_avg33_mni_bbr... Loading spline control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.slfp_PP_avg33_mni_bbr/cpts.map.txt Loading spline mask from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.slfp_PP_avg33_mni_bbr/path.pd.nii.gz Done in 0.586 sec. dmri_pathstats done /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.slfp_PP_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dtifit --path rh.slfp --subj elmo.2005 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.slfp_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.slfp_PP_avg33_mni_bbr/pathstats.byvoxel.txt cwd /autofs/space/pluto_001/users/ayendiki/tract cmdline /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.slfp_PP_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dtifit --path rh.slfp --subj elmo.2005 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.slfp_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.slfp_PP_avg33_mni_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-29 machine x86_64 user ayendiki Input tracula directory: /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.slfp_PP_avg33_mni_bbr Input DTI fit base: /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dtifit Pathway name: rh.slfp Subject name: elmo.2005 Output file for overall measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.slfp_PP_avg33_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.slfp_PP_avg33_mni_bbr/pathstats.byvoxel.txt Computing statistics on /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.slfp_PP_avg33_mni_bbr... Loading spline control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.slfp_PP_avg33_mni_bbr/cpts.map.txt Loading spline mask from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.slfp_PP_avg33_mni_bbr/path.pd.nii.gz Done in 0.546 sec. dmri_pathstats done /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.slft_PP_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dtifit --path lh.slft --subj elmo.2005 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.slft_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.slft_PP_avg33_mni_bbr/pathstats.byvoxel.txt cwd /autofs/space/pluto_001/users/ayendiki/tract cmdline /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.slft_PP_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dtifit --path lh.slft --subj elmo.2005 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.slft_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.slft_PP_avg33_mni_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-29 machine x86_64 user ayendiki Input tracula directory: /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.slft_PP_avg33_mni_bbr Input DTI fit base: /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dtifit Pathway name: lh.slft Subject name: elmo.2005 Output file for overall measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.slft_PP_avg33_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.slft_PP_avg33_mni_bbr/pathstats.byvoxel.txt Computing statistics on /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.slft_PP_avg33_mni_bbr... Loading spline control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.slft_PP_avg33_mni_bbr/cpts.map.txt Loading spline mask from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/lh.slft_PP_avg33_mni_bbr/path.pd.nii.gz Done in 0.586 sec. dmri_pathstats done /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.slft_PP_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dtifit --path rh.slft --subj elmo.2005 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.slft_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.slft_PP_avg33_mni_bbr/pathstats.byvoxel.txt cwd /autofs/space/pluto_001/users/ayendiki/tract cmdline /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.slft_PP_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dtifit --path rh.slft --subj elmo.2005 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.slft_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.slft_PP_avg33_mni_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-29 machine x86_64 user ayendiki Input tracula directory: /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.slft_PP_avg33_mni_bbr Input DTI fit base: /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dmri/dtifit Pathway name: rh.slft Subject name: elmo.2005 Output file for overall measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.slft_PP_avg33_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.slft_PP_avg33_mni_bbr/pathstats.byvoxel.txt Computing statistics on /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.slft_PP_avg33_mni_bbr... Loading spline control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.slft_PP_avg33_mni_bbr/cpts.map.txt Loading spline mask from /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/rh.slft_PP_avg33_mni_bbr/path.pd.nii.gz Done in 0.541 sec. dmri_pathstats done /usr/local/freesurfer/dev/bin/dmri_mergepaths --indir /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath --in fmajor_PP_avg33_mni_bbr/path.pd.nii.gz fminor_PP_avg33_mni_bbr/path.pd.nii.gz lh.atr_PP_avg33_mni_bbr/path.pd.nii.gz lh.cab_PP_avg33_mni_bbr/path.pd.nii.gz lh.ccg_PP_avg33_mni_bbr/path.pd.nii.gz lh.cst_AS_avg33_mni_bbr/path.pd.nii.gz lh.ilf_AS_avg33_mni_bbr/path.pd.nii.gz lh.slfp_PP_avg33_mni_bbr/path.pd.nii.gz lh.slft_PP_avg33_mni_bbr/path.pd.nii.gz lh.unc_AS_avg33_mni_bbr/path.pd.nii.gz rh.atr_PP_avg33_mni_bbr/path.pd.nii.gz rh.cab_PP_avg33_mni_bbr/path.pd.nii.gz rh.ccg_PP_avg33_mni_bbr/path.pd.nii.gz rh.cst_AS_avg33_mni_bbr/path.pd.nii.gz rh.ilf_AS_avg33_mni_bbr/path.pd.nii.gz rh.slfp_PP_avg33_mni_bbr/path.pd.nii.gz rh.slft_PP_avg33_mni_bbr/path.pd.nii.gz rh.unc_AS_avg33_mni_bbr/path.pd.nii.gz --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/merged_avg33_mni_bbr.mgz --ctab /usr/local/freesurfer/dev/FreeSurferColorLUT.txt --thresh .2 cwd /autofs/space/pluto_001/users/ayendiki/tract cmdline /usr/local/freesurfer/dev/bin/dmri_mergepaths --indir /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath --in fmajor_PP_avg33_mni_bbr/path.pd.nii.gz fminor_PP_avg33_mni_bbr/path.pd.nii.gz lh.atr_PP_avg33_mni_bbr/path.pd.nii.gz lh.cab_PP_avg33_mni_bbr/path.pd.nii.gz lh.ccg_PP_avg33_mni_bbr/path.pd.nii.gz lh.cst_AS_avg33_mni_bbr/path.pd.nii.gz lh.ilf_AS_avg33_mni_bbr/path.pd.nii.gz lh.slfp_PP_avg33_mni_bbr/path.pd.nii.gz lh.slft_PP_avg33_mni_bbr/path.pd.nii.gz lh.unc_AS_avg33_mni_bbr/path.pd.nii.gz rh.atr_PP_avg33_mni_bbr/path.pd.nii.gz rh.cab_PP_avg33_mni_bbr/path.pd.nii.gz rh.ccg_PP_avg33_mni_bbr/path.pd.nii.gz rh.cst_AS_avg33_mni_bbr/path.pd.nii.gz rh.ilf_AS_avg33_mni_bbr/path.pd.nii.gz rh.slfp_PP_avg33_mni_bbr/path.pd.nii.gz rh.slft_PP_avg33_mni_bbr/path.pd.nii.gz rh.unc_AS_avg33_mni_bbr/path.pd.nii.gz --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/merged_avg33_mni_bbr.mgz --ctab /usr/local/freesurfer/dev/FreeSurferColorLUT.txt --thresh .2 sysname Linux hostname compute-0-29 machine x86_64 user ayendiki Input directory: /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath Input files: fmajor_PP_avg33_mni_bbr/path.pd.nii.gz fminor_PP_avg33_mni_bbr/path.pd.nii.gz lh.atr_PP_avg33_mni_bbr/path.pd.nii.gz lh.cab_PP_avg33_mni_bbr/path.pd.nii.gz lh.ccg_PP_avg33_mni_bbr/path.pd.nii.gz lh.cst_AS_avg33_mni_bbr/path.pd.nii.gz lh.ilf_AS_avg33_mni_bbr/path.pd.nii.gz lh.slfp_PP_avg33_mni_bbr/path.pd.nii.gz lh.slft_PP_avg33_mni_bbr/path.pd.nii.gz lh.unc_AS_avg33_mni_bbr/path.pd.nii.gz rh.atr_PP_avg33_mni_bbr/path.pd.nii.gz rh.cab_PP_avg33_mni_bbr/path.pd.nii.gz rh.ccg_PP_avg33_mni_bbr/path.pd.nii.gz rh.cst_AS_avg33_mni_bbr/path.pd.nii.gz rh.ilf_AS_avg33_mni_bbr/path.pd.nii.gz rh.slfp_PP_avg33_mni_bbr/path.pd.nii.gz rh.slft_PP_avg33_mni_bbr/path.pd.nii.gz rh.unc_AS_avg33_mni_bbr/path.pd.nii.gz Output file: /space/freesurfer/subjects/diffusion_tutorial/elmo.2005/dpath/merged_avg33_mni_bbr.mgz Color table file: /autofs/cluster/freesurfer/centos6_x86_64/dev/FreeSurferColorLUT.txt Lower threshold for display: 0.200000 Merging volume 1 of 18... Threshold: 32.2 Name: Corpus Callosum Forceps Major Merging volume 2 of 18... Threshold: 25.2 Name: Corpus Callosum Forceps Minor Merging volume 3 of 18... Threshold: 16.8 Name: Left Anterior Thalamic Radiation Merging volume 4 of 18... Threshold: 25.6 Name: Left Cingulum - Angular Bundle Merging volume 5 of 18... Threshold: 78.8 Name: Left Cingulum - Cingulate Gyrus Merging volume 6 of 18... Threshold: 26.6 Name: Left Corticospinal Tract Merging volume 7 of 18... Threshold: 69.4 Name: Left Inferior Longitudinal Fasciculus Merging volume 8 of 18... Threshold: 31.6 Name: Left Superior Longitudinal Fasciculus - Parietal Merging volume 9 of 18... Threshold: 33.4 Name: Left Superior Longitudinal Fasciculus - Temporal Merging volume 10 of 18... Threshold: 34 Name: Left Uncinate Fasciculus Merging volume 11 of 18... Threshold: 26.4 Name: Right Anterior Thalamic Radiation Merging volume 12 of 18... Threshold: 43.8 Name: Right Cingulum - Angular Bundle Merging volume 13 of 18... Threshold: 156.8 Name: Right Cingulum - Cingulate Gyrus Merging volume 14 of 18... Threshold: 23 Name: Right Corticospinal Tract Merging volume 15 of 18... Threshold: 73.6 Name: Right Inferior Longitudinal Fasciculus Merging volume 16 of 18... Threshold: 28.6 Name: Right Superior Longitudinal Fasciculus - Parietal Merging volume 17 of 18... Threshold: 61.6 Name: Right Superior Longitudinal Fasciculus - Temporal Merging volume 18 of 18... Threshold: 35 Name: Right Uncinate Fasciculus Done in 2.982 sec. dmri_mergepaths done #------------------------------------- trac-paths finished without error at Thu Apr 25 10:28:41 EDT 2013