Logfile for bbregister Wed Apr 24 21:28:55 EDT 2013 setenv SUBJECTS_DIR /autofs/space/terrier_002/users/nicks/subjects/nicks_recons cd /homes/10/ayendiki /usr/local/freesurfer/dev/bin/bbregister --s nick-2008-07-17 --init-fsl --dti --mov /homes/10/ayendiki/tract/nicks/nick-2008-07-17/dmri/dwi.nii.gz --reg /homes/10/ayendiki/tract/nicks/nick-2008-07-17/dmri/xfms/anatorig2diff.bbr.dat --fslmat /homes/10/ayendiki/tract/nicks/nick-2008-07-17/dmri/xfms/diff2anatorig.bbr.mat $Id: bbregister,v 1.56 2013/03/25 18:04:29 greve Exp $ Linux compute-0-3 2.6.32-279.22.1.el6.x86_64 #1 SMP Wed Feb 6 03:10:46 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux FREESURFER_HOME /usr/local/freesurfer/dev mri_convert /homes/10/ayendiki/tract/nicks/nick-2008-07-17/dmri/dwi.nii.gz /homes/10/ayendiki/tract/nicks/nick-2008-07-17/dmri/xfms/tmp.bbregister.17409/template.nii mri_convert /homes/10/ayendiki/tract/nicks/nick-2008-07-17/dmri/dwi.nii.gz /homes/10/ayendiki/tract/nicks/nick-2008-07-17/dmri/xfms/tmp.bbregister.17409/template.nii $Id: mri_convert.c,v 1.203 2012/12/06 21:44:17 greve Exp $ reading from /homes/10/ayendiki/tract/nicks/nick-2008-07-17/dmri/dwi.nii.gz... TR=1000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999687, -0.0231588, -0.00949289) j_ras = (-0.0249093, 0.957603, 0.287012) k_ras = (-0.00244356, -0.287158, 0.95788) writing to /homes/10/ayendiki/tract/nicks/nick-2008-07-17/dmri/xfms/tmp.bbregister.17409/template.nii... fslregister --s nick-2008-07-17 --mov /homes/10/ayendiki/tract/nicks/nick-2008-07-17/dmri/xfms/tmp.bbregister.17409/template.nii --reg /homes/10/ayendiki/tract/nicks/nick-2008-07-17/dmri/xfms/tmp.bbregister.17409/reg.init.dat --niters 1 --maxangle 90 --tmp /homes/10/ayendiki/tract/nicks/nick-2008-07-17/dmri/xfms/tmp.bbregister.17409/fslregister --dof 6 --fsvol brainmask.mgz --nobetmov Log file is /homes/10/ayendiki/tract/nicks/nick-2008-07-17/dmri/xfms/tmp.bbregister.17409/reg.init.dat.fslregister.log Wed Apr 24 21:29:42 EDT 2013 --s nick-2008-07-17 --mov /homes/10/ayendiki/tract/nicks/nick-2008-07-17/dmri/xfms/tmp.bbregister.17409/template.nii --reg /homes/10/ayendiki/tract/nicks/nick-2008-07-17/dmri/xfms/tmp.bbregister.17409/reg.init.dat --niters 1 --maxangle 90 --tmp /homes/10/ayendiki/tract/nicks/nick-2008-07-17/dmri/xfms/tmp.bbregister.17409/fslregister --dof 6 --fsvol brainmask.mgz --nobetmov $Id: fslregister,v 1.36 2012/11/08 16:18:43 greve Exp $ compute-0-3 Linux compute-0-3 2.6.32-279.22.1.el6.x86_64 #1 SMP Wed Feb 6 03:10:46 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux nIters 1 -------------------------------------- /homes/10/ayendiki mri_convert /autofs/space/terrier_002/users/nicks/subjects/nicks_recons/nick-2008-07-17/mri/brainmask.mgz /homes/10/ayendiki/tract/nicks/nick-2008-07-17/dmri/xfms/tmp.bbregister.17409/fslregister/refvol.fslregister.nii mri_convert /autofs/space/terrier_002/users/nicks/subjects/nicks_recons/nick-2008-07-17/mri/brainmask.mgz /homes/10/ayendiki/tract/nicks/nick-2008-07-17/dmri/xfms/tmp.bbregister.17409/fslregister/refvol.fslregister.nii $Id: mri_convert.c,v 1.203 2012/12/06 21:44:17 greve Exp $ reading from /autofs/space/terrier_002/users/nicks/subjects/nicks_recons/nick-2008-07-17/mri/brainmask.mgz... TR=2530.00, TE=1.70, TI=1200.00, flip angle=7.00 i_ras = (-1, -5.58794e-08, 6.98492e-08) j_ras = (1.35042e-07, 2.21189e-09, -1) k_ras = (-3.1665e-08, 1, -4.58385e-09) writing to /homes/10/ayendiki/tract/nicks/nick-2008-07-17/dmri/xfms/tmp.bbregister.17409/fslregister/refvol.fslregister.nii... -------------------------------------- /homes/10/ayendiki mri_convert /homes/10/ayendiki/tract/nicks/nick-2008-07-17/dmri/xfms/tmp.bbregister.17409/template.nii /homes/10/ayendiki/tract/nicks/nick-2008-07-17/dmri/xfms/tmp.bbregister.17409/fslregister/movvol.fslregister.nii --frame 0 mri_convert /homes/10/ayendiki/tract/nicks/nick-2008-07-17/dmri/xfms/tmp.bbregister.17409/template.nii /homes/10/ayendiki/tract/nicks/nick-2008-07-17/dmri/xfms/tmp.bbregister.17409/fslregister/movvol.fslregister.nii --frame 0 $Id: mri_convert.c,v 1.203 2012/12/06 21:44:17 greve Exp $ reading from /homes/10/ayendiki/tract/nicks/nick-2008-07-17/dmri/xfms/tmp.bbregister.17409/template.nii... TR=1000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999687, -0.0231588, -0.00949289) j_ras = (-0.0249093, 0.957603, 0.287012) k_ras = (-0.00244356, -0.287158, 0.95788) keeping frame 0 writing to /homes/10/ayendiki/tract/nicks/nick-2008-07-17/dmri/xfms/tmp.bbregister.17409/fslregister/movvol.fslregister.nii... Mov determinant is -6.34232 /homes/10/ayendiki tkregister2_cmdl --mov /homes/10/ayendiki/tract/nicks/nick-2008-07-17/dmri/xfms/tmp.bbregister.17409/fslregister/movvol.fslregister.nii --reg /homes/10/ayendiki/tract/nicks/nick-2008-07-17/dmri/xfms/tmp.bbregister.17409/fslregister/reg0.17532.dat --regheader --fslregout /homes/10/ayendiki/tract/nicks/nick-2008-07-17/dmri/xfms/tmp.bbregister.17409/reg.init.dat.fsl.mat0 --s nick-2008-07-17 --noedit tkregister_tcl /usr/local/freesurfer/dev/tktools/tkregister2.tcl INFO: no target volume specified, assuming FreeSurfer orig volume. target volume orig movable volume /homes/10/ayendiki/tract/nicks/nick-2008-07-17/dmri/xfms/tmp.bbregister.17409/fslregister/movvol.fslregister.nii reg file /homes/10/ayendiki/tract/nicks/nick-2008-07-17/dmri/xfms/tmp.bbregister.17409/fslregister/reg0.17532.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.126 2012/01/20 21:00:37 greve Exp $ Diagnostic Level -1 INFO: loading target /autofs/space/terrier_002/users/nicks/subjects/nicks_recons/nick-2008-07-17/mri/orig.mgz Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /homes/10/ayendiki/tract/nicks/nick-2008-07-17/dmri/xfms/tmp.bbregister.17409/fslregister/movvol.fslregister.nii Tmov: -------------------- -1.852 0.000 0.000 118.500; 0.000 0.000 1.850 -73.075; 0.000 -1.852 0.000 118.500; 0.000 0.000 0.000 1.000; mkheaderreg = 1, float2int = 0 Computing reg from header (and possibly input matrix) ---- Input registration matrix (computed) -------- 1.000 0.023 0.009 -0.450; -0.002 -0.287 0.958 -0.925; 0.025 -0.958 -0.287 1.852; 0.000 0.000 0.000 1.000; --------------------------------------- ---- Input registration matrix -------- 1.000 0.023 0.009 -0.450; -0.002 -0.287 0.958 -0.925; 0.025 -0.958 -0.287 1.852; 0.000 0.000 0.000 1.000; Determinant 1 subject = nick-2008-07-17 RegMat --------------------------- 1.000 0.023 0.009 -0.450; -0.002 -0.287 0.958 -0.925; 0.025 -0.958 -0.287 1.852; 0.000 0.000 0.000 1.000; FSLOUTPUTTYPE NIFTI tkreg2FSL: mov det = -6.34232, ref det = -1 Wed Apr 24 21:30:04 EDT 2013 /homes/10/ayendiki flirt.fsl -ref /homes/10/ayendiki/tract/nicks/nick-2008-07-17/dmri/xfms/tmp.bbregister.17409/fslregister/refvol.fslregister.nii -in /homes/10/ayendiki/tract/nicks/nick-2008-07-17/dmri/xfms/tmp.bbregister.17409/fslregister/movvol.fslregister.nii -bins 256 -cost corratio -dof 6 -searchrx -90 90 -searchry -90 90 -searchrz -90 90 -verbose 0 -omat /homes/10/ayendiki/tract/nicks/nick-2008-07-17/dmri/xfms/tmp.bbregister.17409/fslregister/fslmat0.trans.mat -schedule /usr/pubsw/packages/fsl/current/etc/flirtsch/xyztrans.sch -init /homes/10/ayendiki/tract/nicks/nick-2008-07-17/dmri/xfms/tmp.bbregister.17409/reg.init.dat.fsl.mat0 Wed Apr 24 21:30:32 EDT 2013 /homes/10/ayendiki flirt.fsl -ref /homes/10/ayendiki/tract/nicks/nick-2008-07-17/dmri/xfms/tmp.bbregister.17409/fslregister/refvol.fslregister.nii -in /homes/10/ayendiki/tract/nicks/nick-2008-07-17/dmri/xfms/tmp.bbregister.17409/fslregister/movvol.fslregister.nii -bins 256 -cost corratio -dof 6 -searchrx -90 90 -searchry -90 90 -searchrz -90 90 -verbose 0 -omat /homes/10/ayendiki/tract/nicks/nick-2008-07-17/dmri/xfms/tmp.bbregister.17409/reg.init.dat.fsl.mat -init /homes/10/ayendiki/tract/nicks/nick-2008-07-17/dmri/xfms/tmp.bbregister.17409/fslregister/fslmat0.trans.mat -schedule /usr/local/freesurfer/dev/bin/flirt.newdefault.20080811.sch tkregister2_cmdl --s nick-2008-07-17 --mov /homes/10/ayendiki/tract/nicks/nick-2008-07-17/dmri/xfms/tmp.bbregister.17409/template.nii --reg /homes/10/ayendiki/tract/nicks/nick-2008-07-17/dmri/xfms/tmp.bbregister.17409/reg.init.dat --fslreg /homes/10/ayendiki/tract/nicks/nick-2008-07-17/dmri/xfms/tmp.bbregister.17409/reg.init.dat.fsl.mat --noedit tkregister_tcl /usr/local/freesurfer/dev/tktools/tkregister2.tcl ---- FSL registration matrix -------- 1.000 0.026 0.002 6.263; 0.010 -0.289 -0.957 223.164; -0.025 0.957 -0.289 38.787; 0.000 0.000 0.000 1.000; --------------------------------------- INFO: no target volume specified, assuming FreeSurfer orig volume. target volume orig movable volume /homes/10/ayendiki/tract/nicks/nick-2008-07-17/dmri/xfms/tmp.bbregister.17409/template.nii reg file /homes/10/ayendiki/tract/nicks/nick-2008-07-17/dmri/xfms/tmp.bbregister.17409/reg.init.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.126 2012/01/20 21:00:37 greve Exp $ Diagnostic Level -1 INFO: loading target /autofs/space/terrier_002/users/nicks/subjects/nicks_recons/nick-2008-07-17/mri/orig.mgz Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /homes/10/ayendiki/tract/nicks/nick-2008-07-17/dmri/xfms/tmp.bbregister.17409/template.nii Tmov: -------------------- -1.852 0.000 0.000 118.500; 0.000 0.000 1.850 -73.075; 0.000 -1.852 0.000 118.500; 0.000 0.000 0.000 1.000; mkheaderreg = 0, float2int = 0 FSLOUTPUTTYPE NIFTI fsl2TkReg: mov det = -6.34232, ref det = -1 ---- Input registration matrix (computed) -------- 1.000 0.025 0.010 -0.074; -0.002 -0.289 0.957 -7.561; 0.026 -0.957 -0.289 2.382; 0.000 0.000 0.000 1.000; --------------------------------------- ---- Input registration matrix -------- 1.000 0.025 0.010 -0.074; -0.002 -0.289 0.957 -7.561; 0.026 -0.957 -0.289 2.382; 0.000 0.000 0.000 1.000; Determinant 1 subject = nick-2008-07-17 RegMat --------------------------- 1.000 0.025 0.010 -0.074; -0.002 -0.289 0.957 -7.561; 0.026 -0.957 -0.289 2.382; 0.000 0.000 0.000 1.000; (standard_in) 1: Error: multiple letter name - nick (standard_in) 2: Error: comparison in expression Started at Wed Apr 24 21:29:42 EDT 2013 Ended at Wed Apr 24 21:31:17 EDT 2013 fslregister Done To check results, run: tkregister2 --mov /homes/10/ayendiki/tract/nicks/nick-2008-07-17/dmri/xfms/tmp.bbregister.17409/template.nii --reg /homes/10/ayendiki/tract/nicks/nick-2008-07-17/dmri/xfms/tmp.bbregister.17409/reg.init.dat --surf orig mri_segreg --mov /homes/10/ayendiki/tract/nicks/nick-2008-07-17/dmri/xfms/tmp.bbregister.17409/template.nii --init-reg /homes/10/ayendiki/tract/nicks/nick-2008-07-17/dmri/xfms/tmp.bbregister.17409/reg.init.dat --out-reg /homes/10/ayendiki/tract/nicks/nick-2008-07-17/dmri/xfms/tmp.bbregister.17409/bbr.pass1.dat --subsamp-brute 100 --subsamp 100 --tol 1e-4 --tol1d 1e-3 --brute -4 4 4 --surf white --gm-proj-frac 0.5 --gm-gt-wm 0.5 $Id: mri_segreg.c,v 1.105 2011/10/27 18:36:43 greve Exp $ setenv SUBJECTS_DIR /autofs/space/terrier_002/users/nicks/subjects/nicks_recons cd /autofs/homes/010/ayendiki mri_segreg --mov /homes/10/ayendiki/tract/nicks/nick-2008-07-17/dmri/xfms/tmp.bbregister.17409/template.nii --init-reg /homes/10/ayendiki/tract/nicks/nick-2008-07-17/dmri/xfms/tmp.bbregister.17409/reg.init.dat --out-reg /homes/10/ayendiki/tract/nicks/nick-2008-07-17/dmri/xfms/tmp.bbregister.17409/bbr.pass1.dat --subsamp-brute 100 --subsamp 100 --tol 1e-4 --tol1d 1e-3 --brute -4 4 4 --surf white --gm-proj-frac 0.5 --gm-gt-wm 0.5 sysname Linux hostname compute-0-3 machine x86_64 user ayendiki movvol /homes/10/ayendiki/tract/nicks/nick-2008-07-17/dmri/xfms/tmp.bbregister.17409/template.nii regfile /homes/10/ayendiki/tract/nicks/nick-2008-07-17/dmri/xfms/tmp.bbregister.17409/reg.init.dat subject nick-2008-07-17 dof 6 outregfile /homes/10/ayendiki/tract/nicks/nick-2008-07-17/dmri/xfms/tmp.bbregister.17409/bbr.pass1.dat UseMask 0 UseLH 1 UseRH 1 nsubsamp 100 PenaltySign -1 PenaltySlope 0.500000 PenaltyCenter 0.000000 surfname white GMProjFrac 0.500000 WMProjAbs 2.000000 lhcostfile (null) rhcostfile (null) interp trilinear (1) frame 0 TolPowell 0.000100 nMaxItersPowell 36 n1dmin 3 Profile 0 Gdiag_no -1 AddNoise 0 (0) SynthSeed 1367805508 TransRandMax 0.000000 RotRandMax 0.000000 Translations 0.000000 0.000000 0.000000 Rotations 0.000000 0.000000 0.000000 Input reg 1.000 0.025 0.010 -0.074; -0.002 -0.289 0.957 -7.561; 0.026 -0.957 -0.289 2.382; 0.000 0.000 0.000 1.000; Loading mov Extracting frame 0 Projecting LH Surfs Loading lh.white surf Loading lh.thickness for GM GM Proj: 1 0.500000 2.000000 WM Proj: 0 0.500000 2.000000 Projecting RH Surfs Loading rh.white surf Loading rh.thickness Projecting RH Surfs Using lh.cortex.label Using rh.cortex.label Computing relative cost 0 -25.0 -25.0 -25.0 1.014541 1 -25.0 -25.0 25.0 1.049360 2 -25.0 25.0 -25.0 1.022171 3 -25.0 25.0 25.0 1.023642 4 25.0 -25.0 -25.0 1.000864 5 25.0 -25.0 25.0 0.979037 6 25.0 25.0 -25.0 1.042203 7 25.0 25.0 25.0 1.016997 REL: 8 0.305246 8.148815 1.018602 rel = 0.299671 Initial costs ---------------- Number of surface hits 2755 WM Intensity 198.2188 +/- 62.8957 Ctx Intensity 266.6985 +/- 90.6022 Pct Contrast 27.5624 +/- 30.4158 Cost 0.3052 RelCost 0.2997 ------------------------------------ Brute force preopt -4 4 4, n = 729 0 -4.0000 -4.0000 -4.0000 -4.0000 -4.0000 -4.0000 0.9583 0.9583 0.0 2 -4.0000 -4.0000 -4.0000 -4.0000 -4.0000 4.0000 0.9295 0.9295 0.0 5 -4.0000 -4.0000 -4.0000 -4.0000 0.0000 4.0000 0.8943 0.8943 0.0 32 -4.0000 -4.0000 0.0000 -4.0000 0.0000 4.0000 0.8826 0.8826 0.0 33 -4.0000 -4.0000 0.0000 -4.0000 4.0000 -4.0000 0.8456 0.8456 0.0 117 -4.0000 0.0000 0.0000 0.0000 -4.0000 -4.0000 0.8445 0.8445 0.0 118 -4.0000 0.0000 0.0000 0.0000 -4.0000 0.0000 0.8160 0.8160 0.0 121 -4.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.8158 0.8158 0.0 123 -4.0000 0.0000 0.0000 0.0000 4.0000 -4.0000 0.8113 0.8113 0.0 124 -4.0000 0.0000 0.0000 0.0000 4.0000 0.0000 0.7803 0.7803 0.0 274 0.0000 -4.0000 0.0000 -4.0000 0.0000 0.0000 0.7062 0.7062 0.0 355 0.0000 0.0000 0.0000 -4.0000 0.0000 0.0000 0.5571 0.5571 0.0 364 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.3052 0.3052 0.0 Brute Force -------------------------- Min cost was 0.305246 Number of iterations 729 Search time 4.773000 sec Parameters at best (transmm, rotdeg) 0.000 0.000 0.000 0.000 0.000 0.000 -------------------------------------------- Starting Powell Minimization Init Powel Params dof = 6 0 0 1 0 2 0 3 0 4 0 5 0 fs_powell::minimize nparams 6 maxfev 36 ftol 0.000100 linmin_xtol_ 0.001000 powell nthiter 0 7 -0.242 0.000 0.000 0.000 0.000 0.000 0.2959639292 8 -0.266 0.000 0.000 0.000 0.000 0.000 0.2952715978 9 -0.401 0.000 0.000 0.000 0.000 0.000 0.2937394668 10 -0.388 0.000 0.000 0.000 0.000 0.000 0.2934783478 12 -0.376 0.000 0.000 0.000 0.000 0.000 0.2933607846 16 -0.376 1.000 0.000 0.000 0.000 0.000 0.2657059685 24 -0.376 0.948 0.000 0.000 0.000 0.000 0.2652138840 26 -0.376 0.956 0.000 0.000 0.000 0.000 0.2651515684 27 -0.376 0.973 0.000 0.000 0.000 0.000 0.2649540103 28 -0.376 0.983 0.000 0.000 0.000 0.000 0.2649016800 34 -0.376 0.983 1.000 0.000 0.000 0.000 0.2563735365 38 -0.376 0.983 0.618 0.000 0.000 0.000 0.2485412510 40 -0.376 0.983 0.609 0.000 0.000 0.000 0.2485095256 41 -0.376 0.983 0.608 0.000 0.000 0.000 0.2485086464 47 -0.376 0.983 0.608 -0.618 0.000 0.000 0.2172444828 49 -0.376 0.983 0.608 -0.696 0.000 0.000 0.2164981773 52 -0.376 0.983 0.608 -0.666 0.000 0.000 0.2164700414 54 -0.376 0.983 0.608 -0.678 0.000 0.000 0.2164623433 65 -0.376 0.983 0.608 -0.678 -0.086 0.000 0.2148164961 67 -0.376 0.983 0.608 -0.678 -0.094 0.000 0.2147425160 68 -0.376 0.983 0.608 -0.678 -0.105 0.000 0.2147132271 77 -0.376 0.983 0.608 -0.678 -0.105 -0.123 0.2115221733 83 -0.376 0.983 0.608 -0.678 -0.105 -0.122 0.2115196949 85 -0.376 0.983 0.608 -0.678 -0.105 -0.121 0.2115190271 powell nthiter 1 93 -0.238 0.983 0.608 -0.678 -0.105 -0.121 0.2083317692 95 -0.278 0.983 0.608 -0.678 -0.105 -0.121 0.2076307475 97 -0.270 0.983 0.608 -0.678 -0.105 -0.121 0.2075872057 98 -0.271 0.983 0.608 -0.678 -0.105 -0.121 0.2075866826 104 -0.271 0.365 0.608 -0.678 -0.105 -0.121 0.1944833167 106 -0.271 0.288 0.608 -0.678 -0.105 -0.121 0.1943385895 107 -0.271 0.292 0.608 -0.678 -0.105 -0.121 0.1943238745 108 -0.271 0.316 0.608 -0.678 -0.105 -0.121 0.1942310134 110 -0.271 0.317 0.608 -0.678 -0.105 -0.121 0.1942295206 111 -0.271 0.319 0.608 -0.678 -0.105 -0.121 0.1942290936 119 -0.271 0.319 0.627 -0.678 -0.105 -0.121 0.1936866923 121 -0.271 0.319 0.664 -0.678 -0.105 -0.121 0.1933467950 123 -0.271 0.319 0.669 -0.678 -0.105 -0.121 0.1933436409 130 -0.271 0.319 0.669 -1.296 -0.105 -0.121 0.1766288123 132 -0.271 0.319 0.669 -1.137 -0.105 -0.121 0.1761258141 133 -0.271 0.319 0.669 -1.192 -0.105 -0.121 0.1757387762 135 -0.271 0.319 0.669 -1.181 -0.105 -0.121 0.1756579599 137 -0.271 0.319 0.669 -1.175 -0.105 -0.121 0.1756406540 138 -0.271 0.319 0.669 -1.174 -0.105 -0.121 0.1756398817 139 -0.271 0.319 0.669 -1.173 -0.105 -0.121 0.1756394752 148 -0.271 0.319 0.669 -1.173 -0.169 -0.121 0.1743340622 149 -0.271 0.319 0.669 -1.173 -0.261 -0.121 0.1738982494 150 -0.271 0.319 0.669 -1.173 -0.238 -0.121 0.1733852158 151 -0.271 0.319 0.669 -1.173 -0.221 -0.121 0.1733601835 152 -0.271 0.319 0.669 -1.173 -0.228 -0.121 0.1733328895 161 -0.271 0.319 0.669 -1.173 -0.228 0.040 0.1715908883 163 -0.271 0.319 0.669 -1.173 -0.228 0.013 0.1715650020 165 -0.271 0.319 0.669 -1.173 -0.228 0.024 0.1715471629 166 -0.271 0.319 0.669 -1.173 -0.228 0.025 0.1715468926 powell nthiter 2 175 -0.209 0.319 0.669 -1.173 -0.228 0.025 0.1701303828 176 -0.177 0.319 0.669 -1.173 -0.228 0.025 0.1695527731 179 -0.172 0.319 0.669 -1.173 -0.228 0.025 0.1694619027 180 -0.165 0.319 0.669 -1.173 -0.228 0.025 0.1694011459 182 -0.162 0.319 0.669 -1.173 -0.228 0.025 0.1693965616 191 -0.162 0.184 0.669 -1.173 -0.228 0.025 0.1668167038 192 -0.162 0.170 0.669 -1.173 -0.228 0.025 0.1665155264 194 -0.162 0.099 0.669 -1.173 -0.228 0.025 0.1656096912 196 -0.162 0.111 0.669 -1.173 -0.228 0.025 0.1655067343 198 -0.162 0.114 0.669 -1.173 -0.228 0.025 0.1655018780 207 -0.162 0.114 0.653 -1.173 -0.228 0.025 0.1652679219 208 -0.162 0.114 0.568 -1.173 -0.228 0.025 0.1650700255 210 -0.162 0.114 0.600 -1.173 -0.228 0.025 0.1650558285 211 -0.162 0.114 0.588 -1.173 -0.228 0.025 0.1650376179 212 -0.162 0.114 0.586 -1.173 -0.228 0.025 0.1650372685 213 -0.162 0.114 0.585 -1.173 -0.228 0.025 0.1650372564 221 -0.162 0.114 0.585 -1.192 -0.228 0.025 0.1649478372 223 -0.162 0.114 0.585 -1.188 -0.228 0.025 0.1649369914 224 -0.162 0.114 0.585 -1.187 -0.228 0.025 0.1649367246 232 -0.162 0.114 0.585 -1.187 -0.248 0.025 0.1648184069 234 -0.162 0.114 0.585 -1.187 -0.249 0.025 0.1648174010 235 -0.162 0.114 0.585 -1.187 -0.250 0.025 0.1648170796 245 -0.162 0.114 0.585 -1.187 -0.250 -0.001 0.1647178125 247 -0.162 0.114 0.585 -1.187 -0.250 0.005 0.1647010476 249 -0.162 0.114 0.585 -1.187 -0.250 0.007 0.1647001509 powell nthiter 3 258 -0.190 0.114 0.585 -1.187 -0.250 0.007 0.1641480250 260 -0.221 0.114 0.585 -1.187 -0.250 0.007 0.1638692442 262 -0.213 0.114 0.585 -1.187 -0.250 0.007 0.1638268407 273 -0.213 0.110 0.585 -1.187 -0.250 0.007 0.1638265859 274 -0.213 0.112 0.585 -1.187 -0.250 0.007 0.1638246183 284 -0.213 0.112 0.546 -1.187 -0.250 0.007 0.1637925224 285 -0.213 0.112 0.562 -1.187 -0.250 0.007 0.1637499862 287 -0.213 0.112 0.560 -1.187 -0.250 0.007 0.1637489205 289 -0.213 0.112 0.558 -1.187 -0.250 0.007 0.1637486822 291 -0.213 0.112 0.559 -1.187 -0.250 0.007 0.1637485505 298 -0.213 0.112 0.559 -1.183 -0.250 0.007 0.1637185989 301 -0.213 0.112 0.559 -1.179 -0.250 0.007 0.1637090527 313 -0.213 0.112 0.559 -1.179 -0.248 0.007 0.1637066136 322 -0.213 0.112 0.559 -1.179 -0.248 -0.053 0.1626950469 324 -0.213 0.112 0.559 -1.179 -0.248 -0.112 0.1623217901 327 -0.213 0.112 0.559 -1.179 -0.248 -0.124 0.1622947880 329 -0.213 0.112 0.559 -1.179 -0.248 -0.126 0.1622934763 330 -0.213 0.112 0.559 -1.179 -0.248 -0.127 0.1622934547 powell nthiter 4 340 -0.188 0.112 0.559 -1.179 -0.248 -0.127 0.1622391914 342 -0.197 0.112 0.559 -1.179 -0.248 -0.127 0.1621941047 351 -0.197 0.115 0.559 -1.179 -0.248 -0.127 0.1621682441 353 -0.197 0.125 0.559 -1.179 -0.248 -0.127 0.1621251940 354 -0.197 0.124 0.559 -1.179 -0.248 -0.127 0.1621250005 364 -0.197 0.124 0.554 -1.179 -0.248 -0.127 0.1621200926 373 -0.197 0.124 0.554 -1.188 -0.248 -0.127 0.1620577148 375 -0.197 0.124 0.554 -1.192 -0.248 -0.127 0.1620495701 386 -0.197 0.124 0.554 -1.192 -0.235 -0.127 0.1620127716 387 -0.197 0.124 0.554 -1.192 -0.239 -0.127 0.1620003646 399 -0.197 0.124 0.554 -1.192 -0.239 -0.136 0.1619725887 powell nthiter 5 411 -0.195 0.124 0.554 -1.192 -0.239 -0.136 0.1619638468 412 -0.192 0.124 0.554 -1.192 -0.239 -0.136 0.1619599165 414 -0.193 0.124 0.554 -1.192 -0.239 -0.136 0.1619587807 434 -0.193 0.124 0.558 -1.192 -0.239 -0.136 0.1619573742 435 -0.193 0.124 0.556 -1.192 -0.239 -0.136 0.1619569169 443 -0.193 0.124 0.556 -1.199 -0.239 -0.136 0.1619546852 444 -0.193 0.124 0.556 -1.197 -0.239 -0.136 0.1619516893 466 -0.193 0.124 0.556 -1.197 -0.239 -0.140 0.1619442510 powell nthiter 6 479 -0.192 0.124 0.556 -1.197 -0.239 -0.140 0.1619439906 499 -0.192 0.124 0.560 -1.197 -0.239 -0.140 0.1619432673 520 -0.192 0.124 0.560 -1.197 -0.242 -0.140 0.1619426418 522 -0.192 0.124 0.560 -1.197 -0.241 -0.140 0.1619415913 532 -0.192 0.124 0.560 -1.197 -0.241 -0.142 0.1619406881 Powell done niters = 6 Computing relative cost 0 -25.0 -25.0 -25.0 1.000415 1 -25.0 -25.0 25.0 1.021523 2 -25.0 25.0 -25.0 1.001151 3 -25.0 25.0 25.0 1.011425 4 25.0 -25.0 -25.0 1.005384 5 25.0 -25.0 25.0 0.981043 6 25.0 25.0 -25.0 1.044042 7 25.0 25.0 25.0 1.009925 REL: 8 0.161941 8.074909 1.009364 rel = 0.160438 Number of iterations 6 Min cost was 0.161941 Number of FunctionCalls 534 TolPowell 0.000100 nMaxItersPowell 36 OptimizationTime 1.622000 sec Parameters at optimum (transmm) -0.19175 0.12438 0.55993 Parameters at optimum (rotdeg) -1.19653 -0.24082 -0.14169 Final costs ---------------- Number of surface hits 2755 WM Intensity 193.0869 +/- 61.8793 Ctx Intensity 266.2903 +/- 78.1898 Pct Contrast 30.9406 +/- 26.9339 Cost 0.1619 RelCost 0.2997 Reg at min cost was 1.000 0.028 0.013 -0.295; -0.004 -0.309 0.951 -7.385; 0.031 -0.951 -0.309 3.099; 0.000 0.000 0.000 1.000; Writing optimal reg to /homes/10/ayendiki/tract/nicks/nick-2008-07-17/dmri/xfms/tmp.bbregister.17409/bbr.pass1.dat, type = 14 Original Reg 1.000 0.025 0.010 -0.074; -0.002 -0.289 0.957 -7.561; 0.026 -0.957 -0.289 2.382; 0.000 0.000 0.000 1.000; Original Reg - Optimal Reg 0.000 -0.003 -0.004 0.221; 0.002 0.020 0.006 -0.176; -0.004 -0.006 0.020 -0.717; 0.000 0.000 0.000 0.000; Computing change in lh position LH rmsDiffMean 1.154829 Computing change in rh position Surface RMS Diff (mm) 1.197393 2.438182 mri_segreg done mri_segreg --mov /homes/10/ayendiki/tract/nicks/nick-2008-07-17/dmri/xfms/tmp.bbregister.17409/template.nii --init-reg /homes/10/ayendiki/tract/nicks/nick-2008-07-17/dmri/xfms/tmp.bbregister.17409/bbr.pass1.dat --out-reg /homes/10/ayendiki/tract/nicks/nick-2008-07-17/dmri/xfms/anatorig2diff.bbr.dat --brute -0.1 0.1 0.1 --interp trilinear --wm-proj-abs 2 --tol 1e-8 --tol1d 1e-3 --c0 0 --mincost /homes/10/ayendiki/tract/nicks/nick-2008-07-17/dmri/xfms/anatorig2diff.bbr.dat.mincost --dof 6 --nmax 36 --param /homes/10/ayendiki/tract/nicks/nick-2008-07-17/dmri/xfms/anatorig2diff.bbr.dat.param --surf white --cur-reg /homes/10/ayendiki/tract/nicks/nick-2008-07-17/dmri/xfms/tmp.bbregister.17409/reg.curopt.dat --gm-proj-frac 0.5 --nsub 1 --gm-gt-wm 0.5 $Id: mri_segreg.c,v 1.105 2011/10/27 18:36:43 greve Exp $ setenv SUBJECTS_DIR /autofs/space/terrier_002/users/nicks/subjects/nicks_recons cd /autofs/homes/010/ayendiki mri_segreg --mov /homes/10/ayendiki/tract/nicks/nick-2008-07-17/dmri/xfms/tmp.bbregister.17409/template.nii --init-reg /homes/10/ayendiki/tract/nicks/nick-2008-07-17/dmri/xfms/tmp.bbregister.17409/bbr.pass1.dat --out-reg /homes/10/ayendiki/tract/nicks/nick-2008-07-17/dmri/xfms/anatorig2diff.bbr.dat --brute -0.1 0.1 0.1 --interp trilinear --wm-proj-abs 2 --tol 1e-8 --tol1d 1e-3 --c0 0 --mincost /homes/10/ayendiki/tract/nicks/nick-2008-07-17/dmri/xfms/anatorig2diff.bbr.dat.mincost --dof 6 --nmax 36 --param /homes/10/ayendiki/tract/nicks/nick-2008-07-17/dmri/xfms/anatorig2diff.bbr.dat.param --surf white --cur-reg /homes/10/ayendiki/tract/nicks/nick-2008-07-17/dmri/xfms/tmp.bbregister.17409/reg.curopt.dat --gm-proj-frac 0.5 --nsub 1 --gm-gt-wm 0.5 sysname Linux hostname compute-0-3 machine x86_64 user ayendiki movvol /homes/10/ayendiki/tract/nicks/nick-2008-07-17/dmri/xfms/tmp.bbregister.17409/template.nii regfile /homes/10/ayendiki/tract/nicks/nick-2008-07-17/dmri/xfms/tmp.bbregister.17409/bbr.pass1.dat subject nick-2008-07-17 dof 6 outregfile /homes/10/ayendiki/tract/nicks/nick-2008-07-17/dmri/xfms/anatorig2diff.bbr.dat UseMask 0 UseLH 1 UseRH 1 nsubsamp 1 PenaltySign -1 PenaltySlope 0.500000 PenaltyCenter 0.000000 surfname white GMProjFrac 0.500000 WMProjAbs 2.000000 lhcostfile (null) rhcostfile (null) interp trilinear (1) frame 0 TolPowell 0.000000 nMaxItersPowell 36 n1dmin 3 Profile 0 Gdiag_no -1 AddNoise 0 (0) SynthSeed 1367379898 TransRandMax 0.000000 RotRandMax 0.000000 Translations 0.000000 0.000000 0.000000 Rotations 0.000000 0.000000 0.000000 Input reg 1.000 0.028 0.013 -0.295; -0.004 -0.309 0.951 -7.385; 0.031 -0.951 -0.309 3.099; 0.000 0.000 0.000 1.000; Loading mov Extracting frame 0 Projecting LH Surfs Loading lh.white surf Loading lh.thickness for GM GM Proj: 1 0.500000 2.000000 WM Proj: 0 0.500000 2.000000 Projecting RH Surfs Loading rh.white surf Loading rh.thickness Projecting RH Surfs Using lh.cortex.label Using rh.cortex.label Computing relative cost 0 -25.0 -25.0 -25.0 1.005094 1 -25.0 -25.0 25.0 1.029688 2 -25.0 25.0 -25.0 1.023471 3 -25.0 25.0 25.0 1.013143 4 25.0 -25.0 -25.0 1.011972 5 25.0 -25.0 25.0 1.005442 6 25.0 25.0 -25.0 1.030741 7 25.0 25.0 25.0 1.020583 REL: 8 0.187648 8.140134 1.017517 rel = 0.184418 Initial costs ---------------- Number of surface hits 275274 WM Intensity 193.5692 +/- 61.5205 Ctx Intensity 266.4650 +/- 79.4073 Pct Contrast 30.8061 +/- 26.8173 Cost 0.1876 RelCost 0.1844 ------------------------------------ Brute force preopt -0.1 0.1 0.1, n = 729 0 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 0.1791 0.1791 0.0 1 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 0.0000 0.1767 0.1767 0.0 2 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 0.1000 0.1761 0.1761 0.0 3 -0.1000 -0.1000 -0.1000 -0.1000 0.0000 -0.1000 0.1744 0.1744 0.0 4 -0.1000 -0.1000 -0.1000 -0.1000 0.0000 0.0000 0.1744 0.1744 0.0 6 -0.1000 -0.1000 -0.1000 -0.1000 0.1000 -0.1000 0.1729 0.1729 0.0 13 -0.1000 -0.1000 -0.1000 0.0000 0.0000 0.0000 0.1718 0.1718 0.0 16 -0.1000 -0.1000 -0.1000 0.0000 0.1000 0.0000 0.1717 0.1717 0.0 22 -0.1000 -0.1000 -0.1000 0.1000 0.0000 0.0000 0.1713 0.1713 0.0 34 -0.1000 -0.1000 0.0000 -0.1000 0.1000 0.0000 0.1710 0.1710 0.0 38 -0.1000 -0.1000 0.0000 0.0000 -0.1000 0.1000 0.1702 0.1702 0.0 40 -0.1000 -0.1000 0.0000 0.0000 0.0000 0.0000 0.1674 0.1674 0.0 41 -0.1000 -0.1000 0.0000 0.0000 0.0000 0.1000 0.1672 0.1672 0.0 68 -0.1000 -0.1000 0.1000 0.0000 0.0000 0.1000 0.1670 0.1670 0.0 121 -0.1000 0.0000 0.0000 0.0000 0.0000 0.0000 0.1660 0.1660 0.0 131 -0.1000 0.0000 0.0000 0.1000 0.0000 0.1000 0.1660 0.1660 0.0 149 -0.1000 0.0000 0.1000 0.0000 0.0000 0.1000 0.1660 0.1660 0.0 158 -0.1000 0.0000 0.1000 0.1000 0.0000 0.1000 0.1654 0.1654 0.0 283 0.0000 -0.1000 0.0000 0.0000 0.0000 0.0000 0.1654 0.1654 0.0 337 0.0000 0.0000 -0.1000 0.0000 0.0000 0.0000 0.1652 0.1652 0.0 363 0.0000 0.0000 0.0000 0.0000 0.0000 -0.1000 0.1639 0.1639 0.0 364 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.1619 0.1619 0.0 Brute Force -------------------------- Min cost was 0.161941 Number of iterations 729 Search time 1.400000 sec Parameters at best (transmm, rotdeg) 0.000 0.000 0.000 0.000 0.000 0.000 -------------------------------------------- Starting Powell Minimization Init Powel Params dof = 6 0 0 1 0 2 0 3 0 4 0 5 0 fs_powell::minimize nparams 6 maxfev 36 ftol 0.000000 linmin_xtol_ 0.001000 powell nthiter 0 7 0.105 0.000 0.000 0.000 0.000 0.000 0.1868999268 8 0.095 0.000 0.000 0.000 0.000 0.000 0.1868892445 17 0.095 0.020 0.000 0.000 0.000 0.000 0.1868351714 18 0.095 0.025 0.000 0.000 0.000 0.000 0.1868346757 19 0.095 0.023 0.000 0.000 0.000 0.000 0.1868343063 27 0.095 0.023 0.087 0.000 0.000 0.000 0.1865346347 29 0.095 0.023 0.083 0.000 0.000 0.000 0.1865333171 30 0.095 0.023 0.082 0.000 0.000 0.000 0.1865332839 38 0.095 0.023 0.082 -0.066 0.000 0.000 0.1862709400 40 0.095 0.023 0.082 -0.064 0.000 0.000 0.1862708421 41 0.095 0.023 0.082 -0.063 0.000 0.000 0.1862706304 48 0.095 0.023 0.082 -0.063 0.030 0.000 0.1861618880 49 0.095 0.023 0.082 -0.063 0.036 0.000 0.1861503753 51 0.095 0.023 0.082 -0.063 0.042 0.000 0.1861460872 52 0.095 0.023 0.082 -0.063 0.043 0.000 0.1861459577 60 0.095 0.023 0.082 -0.063 0.043 0.149 0.1848128853 61 0.095 0.023 0.082 -0.063 0.043 0.155 0.1847964139 62 0.095 0.023 0.082 -0.063 0.043 0.191 0.1847889235 64 0.095 0.023 0.082 -0.063 0.043 0.174 0.1847698039 66 0.095 0.023 0.082 -0.063 0.043 0.176 0.1847696712 powell nthiter 1 77 0.083 0.023 0.082 -0.063 0.043 0.176 0.1847680395 79 0.089 0.023 0.082 -0.063 0.043 0.176 0.1847619980 89 0.089 0.031 0.082 -0.063 0.043 0.176 0.1847570772 99 0.089 0.031 0.081 -0.063 0.043 0.176 0.1847570682 108 0.089 0.031 0.081 -0.068 0.043 0.176 0.1847550592 109 0.089 0.031 0.081 -0.069 0.043 0.176 0.1847548797 117 0.089 0.031 0.081 -0.069 0.001 0.176 0.1845909435 119 0.089 0.031 0.081 -0.069 0.008 0.176 0.1845825410 123 0.089 0.031 0.081 -0.069 0.009 0.176 0.1845825286 powell nthiter 2 141 0.112 0.031 0.081 -0.069 0.009 0.176 0.1845398093 142 0.110 0.031 0.081 -0.069 0.009 0.176 0.1845375913 143 0.106 0.031 0.081 -0.069 0.009 0.176 0.1845355590 154 0.106 0.029 0.081 -0.069 0.009 0.176 0.1845342214 163 0.106 0.029 0.089 -0.069 0.009 0.176 0.1845167675 164 0.106 0.029 0.099 -0.069 0.009 0.176 0.1845165175 166 0.106 0.029 0.094 -0.069 0.009 0.176 0.1845141602 167 0.106 0.029 0.095 -0.069 0.009 0.176 0.1845141481 176 0.106 0.029 0.095 -0.068 0.009 0.176 0.1845141072 184 0.106 0.029 0.095 -0.068 -0.008 0.176 0.1844924261 185 0.106 0.029 0.095 -0.068 -0.007 0.176 0.1844907689 186 0.106 0.029 0.095 -0.068 -0.003 0.176 0.1844887610 188 0.106 0.029 0.095 -0.068 -0.004 0.176 0.1844886224 198 0.106 0.029 0.095 -0.068 -0.004 0.179 0.1844872763 powell nthiter 3 208 0.117 0.029 0.095 -0.068 -0.004 0.179 0.1844796313 209 0.116 0.029 0.095 -0.068 -0.004 0.179 0.1844781059 210 0.114 0.029 0.095 -0.068 -0.004 0.179 0.1844773297 219 0.114 0.033 0.095 -0.068 -0.004 0.179 0.1844767395 220 0.114 0.031 0.095 -0.068 -0.004 0.179 0.1844763551 230 0.114 0.031 0.096 -0.068 -0.004 0.179 0.1844762627 250 0.114 0.031 0.096 -0.068 -0.006 0.179 0.1844757017 252 0.114 0.031 0.096 -0.068 -0.005 0.179 0.1844756533 277 0.114 0.032 0.096 -0.068 -0.005 0.180 0.1844756425 powell nthiter 4 327 0.114 0.031 0.096 -0.068 -0.006 0.180 0.1844756308 335 0.115 0.032 0.096 -0.068 -0.006 0.180 0.1844754159 337 0.115 0.032 0.096 -0.068 -0.006 0.180 0.1844752854 357 0.114 0.032 0.096 -0.068 -0.006 0.180 0.1844752756 359 0.114 0.032 0.096 -0.068 -0.006 0.180 0.1844752637 361 0.114 0.032 0.096 -0.068 -0.006 0.180 0.1844752616 362 0.114 0.032 0.096 -0.068 -0.006 0.180 0.1844752523 powell nthiter 5 373 0.114 0.032 0.096 -0.068 -0.006 0.179 0.1844751971 417 0.115 0.032 0.096 -0.068 -0.007 0.179 0.1844751663 421 0.115 0.032 0.096 -0.068 -0.007 0.179 0.1844751017 425 0.115 0.032 0.096 -0.068 -0.007 0.179 0.1844750503 426 0.115 0.032 0.096 -0.068 -0.007 0.179 0.1844750178 427 0.115 0.032 0.096 -0.068 -0.007 0.179 0.1844749987 428 0.115 0.032 0.096 -0.068 -0.007 0.179 0.1844749933 powell nthiter 6 Powell done niters = 6 Computing relative cost 0 -25.0 -25.0 -25.0 1.005113 1 -25.0 -25.0 25.0 1.030966 2 -25.0 25.0 -25.0 1.023473 3 -25.0 25.0 25.0 1.012630 4 25.0 -25.0 -25.0 1.010288 5 25.0 -25.0 25.0 1.004662 6 25.0 25.0 -25.0 1.031998 7 25.0 25.0 25.0 1.020228 REL: 8 0.184475 8.139357 1.017420 rel = 0.181317 Number of iterations 6 Min cost was 0.184475 Number of FunctionCalls 500 TolPowell 0.000000 nMaxItersPowell 36 OptimizationTime 84.261000 sec Parameters at optimum (transmm) 0.11474 0.03180 0.09642 Parameters at optimum (rotdeg) -0.06806 -0.00669 0.17936 Final costs ---------------- Number of surface hits 275274 WM Intensity 193.3424 +/- 60.9443 Ctx Intensity 266.5937 +/- 79.0250 Pct Contrast 30.9771 +/- 26.6508 Cost 0.1845 RelCost 0.1844 Reg at min cost was 1.000 0.029 0.010 -0.157; -0.001 -0.310 0.951 -7.351; 0.031 -0.950 -0.310 3.204; 0.000 0.000 0.000 1.000; Writing optimal reg to /homes/10/ayendiki/tract/nicks/nick-2008-07-17/dmri/xfms/anatorig2diff.bbr.dat, type = 14 Original Reg 1.000 0.028 0.013 -0.295; -0.004 -0.309 0.951 -7.385; 0.031 -0.951 -0.309 3.099; 0.000 0.000 0.000 1.000; Original Reg - Optimal Reg -0.000 -0.001 0.003 -0.137; -0.003 0.001 0.000 -0.035; -0.000 -0.000 0.001 -0.105; 0.000 0.000 0.000 0.000; Computing change in lh position LH rmsDiffMean 0.187111 Computing change in rh position Surface RMS Diff (mm) 0.206535 0.380336 mri_segreg done tkregister2_cmdl --mov /homes/10/ayendiki/tract/nicks/nick-2008-07-17/dmri/dwi.nii.gz --reg /homes/10/ayendiki/tract/nicks/nick-2008-07-17/dmri/xfms/anatorig2diff.bbr.dat --noedit --fslregout /homes/10/ayendiki/tract/nicks/nick-2008-07-17/dmri/xfms/diff2anatorig.bbr.mat tkregister_tcl /usr/local/freesurfer/dev/tktools/tkregister2.tcl INFO: no target volume specified, assuming FreeSurfer orig volume. target volume orig movable volume /homes/10/ayendiki/tract/nicks/nick-2008-07-17/dmri/dwi.nii.gz reg file /homes/10/ayendiki/tract/nicks/nick-2008-07-17/dmri/xfms/anatorig2diff.bbr.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.126 2012/01/20 21:00:37 greve Exp $ Diagnostic Level -1 ---- Input registration matrix -------- 1.000 0.029 0.010 -0.157; -0.001 -0.310 0.951 -7.351; 0.031 -0.950 -0.310 3.204; 0.000 0.000 0.000 1.000; float2int = 0 --------------------------------------- INFO: loading target /autofs/space/terrier_002/users/nicks/subjects/nicks_recons/nick-2008-07-17/mri/orig.mgz Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /homes/10/ayendiki/tract/nicks/nick-2008-07-17/dmri/dwi.nii.gz Tmov: -------------------- -1.852 0.000 0.000 118.500; 0.000 0.000 1.850 -73.075; 0.000 -1.852 0.000 118.500; 0.000 0.000 0.000 1.000; mkheaderreg = 0, float2int = 0 ---- Input registration matrix -------- 1.000 0.029 0.010 -0.157; -0.001 -0.310 0.951 -7.351; 0.031 -0.950 -0.310 3.204; 0.000 0.000 0.000 1.000; Determinant 1 subject = nick-2008-07-17 RegMat --------------------------- 1.000 0.029 0.010 -0.157; -0.001 -0.310 0.951 -7.351; 0.031 -0.950 -0.310 3.204; 0.000 0.000 0.000 1.000; FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -6.34232, ref det = -1 Cleaning up Started at Wed Apr 24 21:28:55 EDT 2013 Ended at Wed Apr 24 21:33:40 EDT 2013 BBR-Run-Time-Sec 285 bbregister Done To check results, run: tkregister2 --mov /homes/10/ayendiki/tract/nicks/nick-2008-07-17/dmri/dwi.nii.gz --reg /homes/10/ayendiki/tract/nicks/nick-2008-07-17/dmri/xfms/anatorig2diff.bbr.dat --surf