selxavg3-sess log file
/usr/local/freesurfer/dev/fsfast/bin/selxavg3-sess
-s sess01 -analysis workmem.sm05.lh
$Id: selxavg3-sess,v 1.67 2015/12/10 22:51:30 zkaufman Exp $
uid=8481(zkaufman) gid=8481(zkaufman) groups=8481(zkaufman),160(fsdev),1046(recon),1538(lcnweb),1590(fsbuild),1601(b40atlas)
/autofs/cluster/pubftp/data/tutorial_data/fsfast-functional
Linux transfer 2.6.32-573.18.1.el6.x86_64 #1 SMP Tue Feb 9 22:46:17 UTC 2016 x86_64 x86_64 x86_64 GNU/Linux
Sun Mar 27 22:22:43 EDT 2016
preproc-sess -s sess01 -d /autofs/cluster/pubftp/data/tutorial_data/fsfast-functional -a workmem.sm05.lh -nolog
--------------------------------------------------------------
preproc-sess logfile is /dev/null
--------------------------------------------------------------
$Id: preproc-sess,v 1.64 2015/12/10 22:51:30 zkaufman Exp $
zkaufman
setenv FREESURFER_HOME /usr/local/freesurfer/dev
setenv SUBJECTS_DIR /cluster/pubftp/data/tutorial_data/fsfast-tutorial.subjects
Linux transfer 2.6.32-573.18.1.el6.x86_64 #1 SMP Tue Feb 9 22:46:17 UTC 2016 x86_64 x86_64 x86_64 GNU/Linux
/autofs/cluster/pubftp/data/tutorial_data/fsfast-functional
/usr/local/freesurfer/dev/fsfast/bin/preproc-sess
-s sess01 -d /autofs/cluster/pubftp/data/tutorial_data/fsfast-functional -a workmem.sm05.lh -nolog
Sun Mar 27 22:22:43 EDT 2016
instem   f 
mc   1     f fmcpr 
stc  1    fmcpr fmcpr.up
sm   0   
mask 1   brain
sess01 Template -----------------------------
mktemplate-sess -s sess01 -d /autofs/cluster/pubftp/data/tutorial_data/fsfast-functional -fsd bold -nolog -update
 
Session: /autofs/cluster/pubftp/data/tutorial_data/fsfast-functional/sess01 ----------------
Sun Mar 27 22:22:43 EDT 2016
Detected input format at nii.gz
sess01 Update not needed
  Run: 001 ----------------
  Sun Mar 27 22:22:43 EDT 2016
  sess01 001 Update not needed
  Run: 002 ----------------
  Sun Mar 27 22:22:43 EDT 2016
  sess01 002 Update not needed
  Run: 003 ----------------
  Sun Mar 27 22:22:43 EDT 2016
  sess01 003 Update not needed
  Run: 004 ----------------
  Sun Mar 27 22:22:43 EDT 2016
  sess01 004 Update not needed
Sun Mar 27 22:22:43 EDT 2016
mktemplate-sess completed 
sess01 Registration -----------------------------
register-sess -s sess01 -d /autofs/cluster/pubftp/data/tutorial_data/fsfast-functional -fsd bold -delete-dat -dof 6 -bold -per-run -nolog -update -init-coreg
--------------------------------------------------------------
register-sess logfile is /dev/null
--------------------------------------------------------------
Sun Mar 27 22:22:43 EDT 2016

setenv SUBJECTS_DIR /cluster/pubftp/data/tutorial_data/fsfast-tutorial.subjects
cd /autofs/cluster/pubftp/data/tutorial_data/fsfast-functional
/usr/local/freesurfer/dev/fsfast/bin/register-sess -s sess01 -d /autofs/cluster/pubftp/data/tutorial_data/fsfast-functional -fsd bold -delete-dat -dof 6 -bold -per-run -nolog -update -init-coreg

freesurfer-Linux-centos6_x86_64-dev-20160325
Linux transfer 2.6.32-573.18.1.el6.x86_64 #1 SMP Tue Feb 9 22:46:17 UTC 2016 x86_64 x86_64 x86_64 GNU/Linux
 
Session: /autofs/cluster/pubftp/data/tutorial_data/fsfast-functional/sess01 ----------------
Sun Mar 27 22:22:44 EDT 2016
/autofs/cluster/pubftp/data/tutorial_data/fsfast-functional/sess01
  Run: 001 ----------------
Sun Mar 27 22:22:44 EDT 2016
Update not needed
  Run: 002 ----------------
Sun Mar 27 22:22:44 EDT 2016
Update not needed
  Run: 003 ----------------
Sun Mar 27 22:22:44 EDT 2016
Update not needed
  Run: 004 ----------------
Sun Mar 27 22:22:44 EDT 2016
Update not needed
Sun Mar 27 22:22:44 EDT 2016
register-sess completed 
sess01 Mask ------------------------
mkbrainmask-sess -maskstem brain -fsd bold -s sess01 -d /autofs/cluster/pubftp/data/tutorial_data/fsfast-functional -per-run -nolog -update
------------------------------------------------
/autofs/cluster/pubftp/data/tutorial_data/fsfast-functional/sess01 
Sun Mar 27 22:22:44 EDT 2016
sess01 Update not needed for session-level mask
sess01 Update not needed for run 001 mask
sess01 Update not needed for run 002 mask
sess01 Update not needed for run 003 mask
sess01 Update not needed for run 004 mask
sess01 Update not needed for run 001 meanval
sess01 Update not needed for run 002 meanval
sess01 Update not needed for run 003 meanval
sess01 Update not needed for run 004 meanval
Sun Mar 27 22:22:44 EDT 2016
mkbrainmask-sess done
sess01 MC -----------------------------
mc-sess -fstem f -fmcstem fmcpr -s sess01 -d /autofs/cluster/pubftp/data/tutorial_data/fsfast-functional -fsd bold -per-run -nolog -update
Logfile is /dev/null
-------------------------------------------
/autofs/cluster/pubftp/data/tutorial_data/fsfast-functional/sess01 
RunList: 001 002 003 004
sess01 001 Update not needed
sess01 002 Update not needed
sess01 003 Update not needed
sess01 004 Update not needed


Sun Mar 27 22:22:45 EDT 2016
mc-sess completed SUCCESSFULLY
sess01 STC -----------------------------
stc-sess -i fmcpr -o fmcpr.up -ngroups 1 -so up -s sess01 -d /autofs/cluster/pubftp/data/tutorial_data/fsfast-functional -fsd bold -nolog -update
Sun Mar 27 22:22:45 EDT 2016
/autofs/cluster/pubftp/data/tutorial_data/fsfast-functional
/usr/local/freesurfer/dev/fsfast/bin/stc-sess
-i fmcpr -o fmcpr.up -ngroups 1 -so up -s sess01 -d /autofs/cluster/pubftp/data/tutorial_data/fsfast-functional -fsd bold -nolog -update
$Id: stc-sess,v 1.13 2015/12/10 22:51:31 zkaufman Exp $
transfer
sess01 -----------------
Sun Mar 27 22:22:45 EDT 2016
-rw-rw-r-- 1 zkaufman fsdev 62635864 Mar 27 21:55 /autofs/cluster/pubftp/data/tutorial_data/fsfast-functional/sess01/bold/001/fmcpr.up.nii.gz
-rw-rw-r-- 1 zkaufman fsdev 61970438 Mar 27 21:53 /autofs/cluster/pubftp/data/tutorial_data/fsfast-functional/sess01/bold/001/fmcpr.nii.gz
Update not needed
-rw-rw-r-- 1 zkaufman fsdev 62605836 Mar 27 21:55 /autofs/cluster/pubftp/data/tutorial_data/fsfast-functional/sess01/bold/002/fmcpr.up.nii.gz
-rw-rw-r-- 1 zkaufman fsdev 61849924 Mar 27 21:54 /autofs/cluster/pubftp/data/tutorial_data/fsfast-functional/sess01/bold/002/fmcpr.nii.gz
Update not needed
-rw-rw-r-- 1 zkaufman fsdev 62591453 Mar 27 21:56 /autofs/cluster/pubftp/data/tutorial_data/fsfast-functional/sess01/bold/003/fmcpr.up.nii.gz
-rw-rw-r-- 1 zkaufman fsdev 61849878 Mar 27 21:54 /autofs/cluster/pubftp/data/tutorial_data/fsfast-functional/sess01/bold/003/fmcpr.nii.gz
Update not needed
-rw-rw-r-- 1 zkaufman fsdev 62604299 Mar 27 21:56 /autofs/cluster/pubftp/data/tutorial_data/fsfast-functional/sess01/bold/004/fmcpr.up.nii.gz
-rw-rw-r-- 1 zkaufman fsdev 61838735 Mar 27 21:55 /autofs/cluster/pubftp/data/tutorial_data/fsfast-functional/sess01/bold/004/fmcpr.nii.gz
Update not needed
Started at Sun Mar 27 22:22:45 EDT 2016
Ended   at Sun Mar 27 22:22:45 EDT 2016
stc-sess Done
sess01 To Surface -----------------------------
rawfunc2surf-sess -fwhm 5 -s sess01 -d /autofs/cluster/pubftp/data/tutorial_data/fsfast-functional -fsd bold -hemi lh -trgsubject fsaverage -stc up -nolog -update -per-run
instem fmcpr.up
outstem fmcpr.up.sm5.fsaverage.hemi
------------------------------ 
1/1 sess01
  1/1 sess01 001 lh ---------
    Sun Mar 27 22:22:45 EDT 2016
/autofs/cluster/pubftp/data/tutorial_data/fsfast-functional/sess01/bold/001/masks/brain.fsaverage.lh.pr.nii.gz does not need updating
  1/1 sess01 002 lh ---------
    Sun Mar 27 22:22:45 EDT 2016
/autofs/cluster/pubftp/data/tutorial_data/fsfast-functional/sess01/bold/002/masks/brain.fsaverage.lh.pr.nii.gz does not need updating
  1/1 sess01 003 lh ---------
    Sun Mar 27 22:22:45 EDT 2016
/autofs/cluster/pubftp/data/tutorial_data/fsfast-functional/sess01/bold/003/masks/brain.fsaverage.lh.pr.nii.gz does not need updating
  1/1 sess01 004 lh ---------
    Sun Mar 27 22:22:45 EDT 2016
/autofs/cluster/pubftp/data/tutorial_data/fsfast-functional/sess01/bold/004/masks/brain.fsaverage.lh.pr.nii.gz does not need updating
/autofs/cluster/pubftp/data/tutorial_data/fsfast-functional/sess01/bold/masks/brain.fsaverage.lh.pr.nii.gz does not need updating
  1/1 sess01 001 lh ---------
    Sun Mar 27 22:22:45 EDT 2016
    sess01 001 Update not needed
  1/1 sess01 002 lh ---------
    Sun Mar 27 22:22:45 EDT 2016
    sess01 002 Update not needed
  1/1 sess01 003 lh ---------
    Sun Mar 27 22:22:45 EDT 2016
    sess01 003 Update not needed
  1/1 sess01 004 lh ---------
    Sun Mar 27 22:22:45 EDT 2016
    sess01 004 Update not needed

Sun Mar 27 22:22:45 EDT 2016
rawfunc2surf-sess completed 
----------------------------------------
Started at Sun Mar 27 22:22:43 EDT 2016
Ended   at Sun Mar 27 22:22:45 EDT 2016
preproc-sess done
-------------------------------------------
1/1 /autofs/cluster/pubftp/data/tutorial_data/fsfast-functional/sess01 
Sun Mar 27 22:22:45 EDT 2016
anadir = /autofs/cluster/pubftp/data/tutorial_data/fsfast-functional/sess01/bold/workmem.sm05.lh
    sess01 Update not needed
MLF is /tmp/selxavg3-sess-21998.m
------------------------------------------
% Sun Mar 27 22:22:45 EDT 2016  
% /autofs/cluster/pubftp/data/tutorial_data/fsfast-functional  
%  workmem.sm05.lh  
which fast_selxavg3
which fast_ldanaflac
which MRIread
  
  
quit;
------------------------------------------
INFO: no data sets needed processing