Mon Mar 28 18:04:30 EDT 2011
/autofs/space/crash_002/users/greve/mytmp/fsftutv5.1
/space/crash/1/users/greve/dev-x86_64/fsfast/bin/stc.fsl
--i /autofs/space/crash_002/users/greve/mytmp/fsftutv5.1/sess01/bold/001/fmcpr.nii.gz --o /autofs/space/crash_002/users/greve/mytmp/fsftutv5.1/sess01/bold/001/fmcpr.up.nii.gz --up
$Id: stc.fsl,v 1.8 2011/03/28 20:38:08 greve Exp $
tanha
/autofs/space/crash_002/users/greve/mytmp/fsftutv5.1
mri_info --nslices --o /autofs/space/crash_002/users/greve/mytmp/fsftutv5.1/sess01/bold/001/tmp.21089/nslices.dat /autofs/space/crash_002/users/greve/mytmp/fsftutv5.1/sess01/bold/001/fmcpr.nii.gz
nslices =  30
---------- Slice Sequence ---------------
1
2
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7
8
9
10
11
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14
15
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30
-----------------------------------------
/autofs/space/crash_002/users/greve/mytmp/fsftutv5.1
mri_convert /autofs/space/crash_002/users/greve/mytmp/fsftutv5.1/sess01/bold/001/fmcpr.nii.gz /autofs/space/crash_002/users/greve/mytmp/fsftutv5.1/sess01/bold/001/tmp.21089/in.nii
mri_convert /autofs/space/crash_002/users/greve/mytmp/fsftutv5.1/sess01/bold/001/fmcpr.nii.gz /autofs/space/crash_002/users/greve/mytmp/fsftutv5.1/sess01/bold/001/tmp.21089/in.nii 
$Id: mri_convert.c,v 1.180 2011/03/21 23:37:29 mreuter Exp $
reading from /autofs/space/crash_002/users/greve/mytmp/fsftutv5.1/sess01/bold/001/fmcpr.nii.gz...
TR=2000.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (-1, -0, 0)
j_ras = (-0, -0.973976, -0.226651)
k_ras = (-2.36491e-18, -0.226651, 0.973976)
writing to /autofs/space/crash_002/users/greve/mytmp/fsftutv5.1/sess01/bold/001/tmp.21089/in.nii...
/autofs/space/crash_002/users/greve/mytmp/fsftutv5.1
slicetimer.fsl -i /autofs/space/crash_002/users/greve/mytmp/fsftutv5.1/sess01/bold/001/tmp.21089/in.nii -o /autofs/space/crash_002/users/greve/mytmp/fsftutv5.1/sess01/bold/001/tmp.21089/out.nii --ocustom=/autofs/space/crash_002/users/greve/mytmp/fsftutv5.1/sess01/bold/001/tmp.21089/saof.dat
/autofs/space/crash_002/users/greve/mytmp/fsftutv5.1
mri_convert /autofs/space/crash_002/users/greve/mytmp/fsftutv5.1/sess01/bold/001/tmp.21089/out.nii /autofs/space/crash_002/users/greve/mytmp/fsftutv5.1/sess01/bold/001/fmcpr.up.nii.gz
mri_convert /autofs/space/crash_002/users/greve/mytmp/fsftutv5.1/sess01/bold/001/tmp.21089/out.nii /autofs/space/crash_002/users/greve/mytmp/fsftutv5.1/sess01/bold/001/fmcpr.up.nii.gz 
$Id: mri_convert.c,v 1.180 2011/03/21 23:37:29 mreuter Exp $
reading from /autofs/space/crash_002/users/greve/mytmp/fsftutv5.1/sess01/bold/001/tmp.21089/out.nii...
TR=2000.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (-1, 0, 0)
j_ras = (0, -0.973976, -0.226651)
k_ras = (-2.36491e-18, -0.226651, 0.973976)
writing to /autofs/space/crash_002/users/greve/mytmp/fsftutv5.1/sess01/bold/001/fmcpr.up.nii.gz...
stc.fsl Done