/space/crash/1/users/greve/freesurferx86/bin/xhemireg --s fsf11anat $Id: xhemireg,v 1.23 2012/06/04 15:00:51 greve Exp $ Sun Jun 23 22:40:32 EDT 2013 Linux compute-0-69 2.6.32-279.22.1.el6.x86_64 #1 SMP Wed Feb 6 03:10:46 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux /autofs/cluster/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat setenv SUBJECTS_DIR /space/freesurfer/subjects/fsfast-tutorial.subjects Sun Jun 23 22:40:32 EDT 2013 Sun Jun 23 22:40:32 EDT 2013 mri_vol2vol --mov mri/orig.mgz --targ mri/orig.mgz --reg /space/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat/xhemi/lrrev.register.dat --o /space/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat/xhemi/mri/orig.mgz --keep-precision --no-save-reg Matrix from regfile: -1.000 0.000 0.000 1.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 0.000; 0.000 0.000 0.000 1.000; movvol mri/orig.mgz targvol mri/orig.mgz outvol /space/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat/xhemi/mri/orig.mgz regfile /space/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat/xhemi/lrrev.register.dat invert 0 tal 0 talres 2 regheader 0 noresample 0 interp trilinear (1) precision uchar (0) Gdiag_no -1 Synth 0 SynthSeed 1372369971 Resampling Output registration matrix is identity mri_vol2vol done mri_vol2vol --mov mri/T1.mgz --targ mri/T1.mgz --reg /space/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat/xhemi/lrrev.register.dat --o /space/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat/xhemi/mri/T1.mgz --keep-precision --no-save-reg Matrix from regfile: -1.000 0.000 0.000 1.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 0.000; 0.000 0.000 0.000 1.000; movvol mri/T1.mgz targvol mri/T1.mgz outvol /space/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat/xhemi/mri/T1.mgz regfile /space/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat/xhemi/lrrev.register.dat invert 0 tal 0 talres 2 regheader 0 noresample 0 interp trilinear (1) precision uchar (0) Gdiag_no -1 Synth 0 SynthSeed 1372287877 Resampling Output registration matrix is identity mri_vol2vol done mri_vol2vol --mov mri/brain.mgz --targ mri/brain.mgz --reg /space/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat/xhemi/lrrev.register.dat --o /space/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat/xhemi/mri/brain.mgz --keep-precision --no-save-reg Matrix from regfile: -1.000 0.000 0.000 1.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 0.000; 0.000 0.000 0.000 1.000; movvol mri/brain.mgz targvol mri/brain.mgz outvol /space/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat/xhemi/mri/brain.mgz regfile /space/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat/xhemi/lrrev.register.dat invert 0 tal 0 talres 2 regheader 0 noresample 0 interp trilinear (1) precision uchar (0) Gdiag_no -1 Synth 0 SynthSeed 1372565585 Resampling Output registration matrix is identity mri_vol2vol done mri_vol2vol --mov mri/brainmask.mgz --targ mri/brainmask.mgz --reg /space/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat/xhemi/lrrev.register.dat --o /space/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat/xhemi/mri/brainmask.mgz --keep-precision --no-save-reg Matrix from regfile: -1.000 0.000 0.000 1.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 0.000; 0.000 0.000 0.000 1.000; movvol mri/brainmask.mgz targvol mri/brainmask.mgz outvol /space/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat/xhemi/mri/brainmask.mgz regfile /space/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat/xhemi/lrrev.register.dat invert 0 tal 0 talres 2 regheader 0 noresample 0 interp trilinear (1) precision uchar (0) Gdiag_no -1 Synth 0 SynthSeed 1372560934 Resampling Output registration matrix is identity mri_vol2vol done mri_vol2vol --mov mri/norm.mgz --targ mri/norm.mgz --reg /space/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat/xhemi/lrrev.register.dat --o /space/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat/xhemi/mri/norm.mgz --keep-precision --no-save-reg Matrix from regfile: -1.000 0.000 0.000 1.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 0.000; 0.000 0.000 0.000 1.000; movvol mri/norm.mgz targvol mri/norm.mgz outvol /space/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat/xhemi/mri/norm.mgz regfile /space/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat/xhemi/lrrev.register.dat invert 0 tal 0 talres 2 regheader 0 noresample 0 interp trilinear (1) precision uchar (0) Gdiag_no -1 Synth 0 SynthSeed 1372601883 Resampling Output registration matrix is identity mri_vol2vol done mri_vol2vol --mov mri/aseg.mgz --targ mri/aseg.mgz --reg /space/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat/xhemi/lrrev.register.dat --o /space/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat/xhemi/mri/aseg.mgz --keep-precision --no-save-reg Matrix from regfile: -1.000 0.000 0.000 1.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 0.000; 0.000 0.000 0.000 1.000; movvol mri/aseg.mgz targvol mri/aseg.mgz outvol /space/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat/xhemi/mri/aseg.mgz regfile /space/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat/xhemi/lrrev.register.dat invert 0 tal 0 talres 2 regheader 0 noresample 0 interp trilinear (1) precision uchar (0) Gdiag_no -1 Synth 0 SynthSeed 1372190433 Resampling Output registration matrix is identity mri_vol2vol done mri_convert /space/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat/xhemi/mri/aseg.mgz /space/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat/xhemi/mri/aseg.mgz --left-right-swap-label mri_convert /space/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat/xhemi/mri/aseg.mgz /space/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat/xhemi/mri/aseg.mgz --left-right-swap-label $Id: mri_convert.c,v 1.204 2013/06/05 17:00:52 fischl Exp $ reading from /space/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat/xhemi/mri/aseg.mgz... Performing left-right swap of labels TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, -8.60053e-09, 3.87945e-08) j_ras = (1.95259e-16, -2.98023e-08, -1) k_ras = (1.49012e-08, 1, 2.98023e-08) writing to /space/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat/xhemi/mri/aseg.mgz... mri_vol2vol --mov mri/aparc+aseg.mgz --targ mri/aparc+aseg.mgz --reg /space/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat/xhemi/lrrev.register.dat --o /space/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat/xhemi/mri/aparc+aseg.mgz --keep-precision --no-save-reg Matrix from regfile: -1.000 0.000 0.000 1.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 0.000; 0.000 0.000 0.000 1.000; movvol mri/aparc+aseg.mgz targvol mri/aparc+aseg.mgz outvol /space/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat/xhemi/mri/aparc+aseg.mgz regfile /space/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat/xhemi/lrrev.register.dat invert 0 tal 0 talres 2 regheader 0 noresample 0 interp trilinear (1) precision int (1) Gdiag_no -1 Synth 0 SynthSeed 1372366014 Resampling Output registration matrix is identity mri_vol2vol done mri_convert /space/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat/xhemi/mri/aparc+aseg.mgz /space/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat/xhemi/mri/aparc+aseg.mgz --left-right-swap-label mri_convert /space/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat/xhemi/mri/aparc+aseg.mgz /space/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat/xhemi/mri/aparc+aseg.mgz --left-right-swap-label $Id: mri_convert.c,v 1.204 2013/06/05 17:00:52 fischl Exp $ reading from /space/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat/xhemi/mri/aparc+aseg.mgz... Performing left-right swap of labels TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, -8.60053e-09, 3.87945e-08) j_ras = (1.95259e-16, -2.98023e-08, -1) k_ras = (1.49012e-08, 1, 2.98023e-08) writing to /space/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat/xhemi/mri/aparc+aseg.mgz... mri_vol2vol --mov mri/nu.mgz --targ mri/nu.mgz --reg /space/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat/xhemi/lrrev.register.dat --o /space/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat/xhemi/mri/nu.mgz --keep-precision --no-save-reg Matrix from regfile: -1.000 0.000 0.000 1.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 0.000; 0.000 0.000 0.000 1.000; movvol mri/nu.mgz targvol mri/nu.mgz outvol /space/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat/xhemi/mri/nu.mgz regfile /space/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat/xhemi/lrrev.register.dat invert 0 tal 0 talres 2 regheader 0 noresample 0 interp trilinear (1) precision uchar (0) Gdiag_no -1 Synth 0 SynthSeed 1372141076 Resampling Output registration matrix is identity mri_vol2vol done Sun Jun 23 22:41:49 EDT 2013 recon-all -sb fsf11anat/xhemi -talairach Subject Stamp: freesurfer-x86_64-unknown-linux-gnu-dev5-20130607 Current Stamp: freesurfer-x86_64-unknown-linux-gnu-dev5-20130607 INFO: SUBJECTS_DIR is /autofs/cluster/freesurfer/subjects/fsfast-tutorial.subjects Actual FREESURFER_HOME /autofs/space/crash_001/users/greve/freesurferx86 Linux compute-0-69 2.6.32-279.22.1.el6.x86_64 #1 SMP Wed Feb 6 03:10:46 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux #-------------------------------------------- #@# Talairach Sun Jun 23 22:41:53 EDT 2013 /autofs/cluster/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat/xhemi/mri mri_nu_correct.mni --n 1 --proto-iters 1000 --distance 50 --no-rescale --i orig.mgz --o orig_nu.mgz talairach_avi --i orig_nu.mgz --xfm transforms/talairach.auto.xfm cp transforms/talairach.auto.xfm transforms/talairach.xfm #------------------------------------------ Started at Sun Jun 23 22:41:49 EDT 2013 Ended at Sun Jun 23 22:45:13 EDT 2013 #@#%# recon-all-run-time-hours 0.057 recon-all -s fsf11anat/xhemi finished without error at Sun Jun 23 22:45:13 EDT 2013 done Sun Jun 23 22:45:13 EDT 2013 mri_surf2surf --s fsf11anat --sval-xyz orig --hemi lh --tval-xyz --tval /space/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat/xhemi/surf/rh.orig --reg /space/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat/xhemi/lrrev.register.dat $Id: mri_surf2surf.c,v 1.96 2012/08/28 13:59:38 greve Exp $ setenv SUBJECTS_DIR /space/freesurfer/subjects/fsfast-tutorial.subjects cd /autofs/cluster/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat mri_surf2surf --s fsf11anat --sval-xyz orig --hemi lh --tval-xyz --tval /space/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat/xhemi/surf/rh.orig --reg /space/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat/xhemi/lrrev.register.dat sysname Linux hostname compute-0-69 machine x86_64 user greve srcsubject = fsf11anat srcval = (null) srctype = trgsubject = fsf11anat trgval = /space/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat/xhemi/surf/rh.orig trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = (null) label-trg = (null) OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /space/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat/surf/lh.sphere.reg Loading source data Reading surface file /space/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat/surf/lh.orig Applying linear registration transform -1.000 0.000 0.000 1.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 0.000; 0.000 0.000 0.000 1.000; Determinant of linear transform is negative, so reversing face order INFO: trgsubject = srcsubject Saving target data Reversing Face Order Sun Jun 23 22:45:23 EDT 2013 mri_surf2surf --s fsf11anat --sval-xyz white --hemi lh --tval-xyz --tval /space/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat/xhemi/surf/rh.white --reg /space/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat/xhemi/lrrev.register.dat $Id: mri_surf2surf.c,v 1.96 2012/08/28 13:59:38 greve Exp $ setenv SUBJECTS_DIR /space/freesurfer/subjects/fsfast-tutorial.subjects cd /autofs/cluster/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat mri_surf2surf --s fsf11anat --sval-xyz white --hemi lh --tval-xyz --tval /space/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat/xhemi/surf/rh.white --reg /space/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat/xhemi/lrrev.register.dat sysname Linux hostname compute-0-69 machine x86_64 user greve srcsubject = fsf11anat srcval = (null) srctype = trgsubject = fsf11anat trgval = /space/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat/xhemi/surf/rh.white trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = (null) label-trg = (null) OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /space/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat/surf/lh.sphere.reg Loading source data Reading surface file /space/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat/surf/lh.white Applying linear registration transform -1.000 0.000 0.000 1.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 0.000; 0.000 0.000 0.000 1.000; Determinant of linear transform is negative, so reversing face order INFO: trgsubject = srcsubject Saving target data Reversing Face Order Sun Jun 23 22:45:34 EDT 2013 mri_surf2surf --s fsf11anat --sval-xyz pial --hemi lh --tval-xyz --tval /space/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat/xhemi/surf/rh.pial --reg /space/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat/xhemi/lrrev.register.dat $Id: mri_surf2surf.c,v 1.96 2012/08/28 13:59:38 greve Exp $ setenv SUBJECTS_DIR /space/freesurfer/subjects/fsfast-tutorial.subjects cd /autofs/cluster/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat mri_surf2surf --s fsf11anat --sval-xyz pial --hemi lh --tval-xyz --tval /space/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat/xhemi/surf/rh.pial --reg /space/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat/xhemi/lrrev.register.dat sysname Linux hostname compute-0-69 machine x86_64 user greve srcsubject = fsf11anat srcval = (null) srctype = trgsubject = fsf11anat trgval = /space/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat/xhemi/surf/rh.pial trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = (null) label-trg = (null) OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /space/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat/surf/lh.sphere.reg Loading source data Reading surface file /space/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat/surf/lh.pial Applying linear registration transform -1.000 0.000 0.000 1.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 0.000; 0.000 0.000 0.000 1.000; Determinant of linear transform is negative, so reversing face order INFO: trgsubject = srcsubject Saving target data Reversing Face Order Sun Jun 23 22:45:44 EDT 2013 mri_surf2surf --s fsf11anat --sval-xyz smoothwm --hemi lh --tval-xyz --tval /space/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat/xhemi/surf/rh.smoothwm --reg /space/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat/xhemi/lrrev.register.dat $Id: mri_surf2surf.c,v 1.96 2012/08/28 13:59:38 greve Exp $ setenv SUBJECTS_DIR /space/freesurfer/subjects/fsfast-tutorial.subjects cd /autofs/cluster/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat mri_surf2surf --s fsf11anat --sval-xyz smoothwm --hemi lh --tval-xyz --tval /space/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat/xhemi/surf/rh.smoothwm --reg /space/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat/xhemi/lrrev.register.dat sysname Linux hostname compute-0-69 machine x86_64 user greve srcsubject = fsf11anat srcval = (null) srctype = trgsubject = fsf11anat trgval = /space/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat/xhemi/surf/rh.smoothwm trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = (null) label-trg = (null) OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /space/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat/surf/lh.sphere.reg Loading source data Reading surface file /space/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat/surf/lh.smoothwm Applying linear registration transform -1.000 0.000 0.000 1.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 0.000; 0.000 0.000 0.000 1.000; Determinant of linear transform is negative, so reversing face order INFO: trgsubject = srcsubject Saving target data Reversing Face Order Sun Jun 23 22:45:55 EDT 2013 mri_surf2surf --s fsf11anat --sval-xyz sphere --hemi lh --tval-xyz --tval /space/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat/xhemi/surf/rh.sphere --reg /space/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat/xhemi/lrrev.pure.register.dat $Id: mri_surf2surf.c,v 1.96 2012/08/28 13:59:38 greve Exp $ setenv SUBJECTS_DIR /space/freesurfer/subjects/fsfast-tutorial.subjects cd /autofs/cluster/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat mri_surf2surf --s fsf11anat --sval-xyz sphere --hemi lh --tval-xyz --tval /space/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat/xhemi/surf/rh.sphere --reg /space/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat/xhemi/lrrev.pure.register.dat sysname Linux hostname compute-0-69 machine x86_64 user greve srcsubject = fsf11anat srcval = (null) srctype = trgsubject = fsf11anat trgval = /space/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat/xhemi/surf/rh.sphere trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = (null) label-trg = (null) OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /space/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat/surf/lh.sphere.reg Loading source data Reading surface file /space/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat/surf/lh.sphere Applying linear registration transform -1.000 0.000 0.000 0.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 0.000; 0.000 0.000 0.000 1.000; Determinant of linear transform is negative, so reversing face order INFO: trgsubject = srcsubject Saving target data Reversing Face Order Sun Jun 23 22:46:06 EDT 2013 mri_surf2surf --s fsf11anat --sval-xyz inflated --hemi lh --tval-xyz --tval /space/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat/xhemi/surf/rh.inflated --reg /space/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat/xhemi/lrrev.pure.register.dat $Id: mri_surf2surf.c,v 1.96 2012/08/28 13:59:38 greve Exp $ setenv SUBJECTS_DIR /space/freesurfer/subjects/fsfast-tutorial.subjects cd /autofs/cluster/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat mri_surf2surf --s fsf11anat --sval-xyz inflated --hemi lh --tval-xyz --tval /space/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat/xhemi/surf/rh.inflated --reg /space/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat/xhemi/lrrev.pure.register.dat sysname Linux hostname compute-0-69 machine x86_64 user greve srcsubject = fsf11anat srcval = (null) srctype = trgsubject = fsf11anat trgval = /space/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat/xhemi/surf/rh.inflated trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = (null) label-trg = (null) OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /space/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat/surf/lh.sphere.reg Loading source data Reading surface file /space/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat/surf/lh.inflated Applying linear registration transform -1.000 0.000 0.000 0.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 0.000; 0.000 0.000 0.000 1.000; Determinant of linear transform is negative, so reversing face order INFO: trgsubject = srcsubject Saving target data Reversing Face Order cp surf/lh.curv /space/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat/xhemi/surf/rh.curv cp surf/lh.sulc /space/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat/xhemi/surf/rh.sulc cp surf/lh.area /space/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat/xhemi/surf/rh.area cp surf/lh.volume /space/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat/xhemi/surf/rh.volume cp surf/lh.thickness /space/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat/xhemi/surf/rh.thickness cp surf/lh.inflated.H /space/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat/xhemi/surf/rh.inflated.H cp surf/lh.area.pial /space/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat/xhemi/surf/rh.area.pial cp surf/lh.area.mid /space/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat/xhemi/surf/rh.area.mid cp surf/lh.curv.pial /space/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat/xhemi/surf/rh.curv.pial cp surf/lh.inflated.K /space/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat/xhemi/surf/rh.inflated.K cp label/lh.aparc.annot /space/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat/xhemi/label/rh.aparc.annot cp label/lh.BA.annot /space/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat/xhemi/label/rh.BA.annot cp label/lh.aparc.a2009s.annot /space/freesurfer/subjects/fsfast-tutorial.subjects/fsf11anat/xhemi/label/rh.aparc.a2009s.annot done hemi lh