Wed Jul 12 17:40:13 EDT 2023 /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2/bin/trac-all -c /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/dmrirc.bids_cm.banda -prep Subject sub-BANDA002 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2 Actual FREESURFER_HOME /autofs/vast/freesurfer/centos7_x86_64/7.3.2 build-stamp.txt: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 cy281 curie.nmr.mgh.harvard.edu Linux curie.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize unlimited coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 131070 memorylocked 64 kbytes maxproc 767413 maxlocks unlimited maxsignal 767413 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 196490796 57162932 21576308 383996 117751556 137895992 Swap: 67108860 41984 67066876 ######################################## Program versions: trac-all 7.3.2 mri_convert --all-info ProgramName: mri_convert ProgramArguments: mri_convert --all-info ProgramVersion: 7.3.2 TimeStamp: 2023/07/12-21:40:13-GMT BuildTime: Aug 4 2022 00:15:18 BuildStamp: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 User: cy281 Machine: curie.nmr.mgh.harvard.edu Platform: Linux PlatformVersion: 3.10.0-1160.92.1.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5 FLIRT version 6.0 bbregister 7.3.2 mri_cvs_register 7.3.2 ProgramName: dmri_motion ProgramArguments: /usr/local/freesurfer/7.3.2/bin/dmri_motion --all-info ProgramVersion: 7.3.2 TimeStamp: 2023/07/12-21:40:13-GMT BuildTime: Aug 4 2022 00:15:18 BuildStamp: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 User: cy281 Machine: curie.nmr.mgh.harvard.edu Platform: Linux PlatformVersion: 3.10.0-1160.92.1.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: dmri_train ProgramArguments: /usr/local/freesurfer/7.3.2/bin/dmri_train --all-info ProgramVersion: 7.3.2 TimeStamp: 2023/07/12-21:40:13-GMT BuildTime: Aug 4 2022 00:15:18 BuildStamp: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 User: cy281 Machine: curie.nmr.mgh.harvard.edu Platform: Linux PlatformVersion: 3.10.0-1160.92.1.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: dmri_paths ProgramArguments: /usr/local/freesurfer/7.3.2/bin/dmri_paths --all-info ProgramVersion: 7.3.2 TimeStamp: 2023/07/12-21:40:13-GMT BuildTime: Aug 4 2022 00:15:18 BuildStamp: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 User: cy281 Machine: curie.nmr.mgh.harvard.edu Platform: Linux PlatformVersion: 3.10.0-1160.92.1.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: dmri_pathstats ProgramArguments: /usr/local/freesurfer/7.3.2/bin/dmri_pathstats --all-info ProgramVersion: 7.3.2 TimeStamp: 2023/07/12-21:40:13-GMT BuildTime: Aug 4 2022 00:15:18 BuildStamp: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 User: cy281 Machine: curie.nmr.mgh.harvard.edu Platform: Linux PlatformVersion: 3.10.0-1160.92.1.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: dmri_mergepaths ProgramArguments: /usr/local/freesurfer/7.3.2/bin/dmri_mergepaths --all-info ProgramVersion: 7.3.2 TimeStamp: 2023/07/12-21:40:13-GMT BuildTime: Aug 4 2022 00:15:18 BuildStamp: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 User: cy281 Machine: curie.nmr.mgh.harvard.edu Platform: Linux PlatformVersion: 3.10.0-1160.92.1.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: dmri_group ProgramArguments: /usr/local/freesurfer/7.3.2/bin/dmri_group --all-info ProgramVersion: 7.3.2 TimeStamp: 2023/07/12-21:40:13-GMT BuildTime: Aug 4 2022 00:15:18 BuildStamp: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 User: cy281 Machine: curie.nmr.mgh.harvard.edu Platform: Linux PlatformVersion: 3.10.0-1160.92.1.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5 New invocation of trac-preproc cy281 curie.nmr.mgh.harvard.edu Linux curie.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize unlimited coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 131070 memorylocked 64 kbytes maxproc 767413 maxlocks unlimited maxsignal 767413 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 196490796 57158772 21580372 383996 117751652 137900160 Swap: 67108860 41984 67066876 #------------------------------------- /usr/local/freesurfer/7.3.2/bin/trac-preproc #------------------------------------- #@# Image corrections Wed Jul 12 17:40:14 EDT 2023 rm -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig.1.bvals /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig.1.bvecs mri_convert --bvec-voxel /autofs/space/nyx_002/users/edann/test_tutorial/bids_cm/sub-BANDA002/dwi/sub-BANDA002_run-dir98_AP_dwi.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig.1.nii.gz mri_convert --bvec-voxel /autofs/space/nyx_002/users/edann/test_tutorial/bids_cm/sub-BANDA002/dwi/sub-BANDA002_run-dir98_AP_dwi.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig.1.nii.gz reading from /autofs/space/nyx_002/users/edann/test_tutorial/bids_cm/sub-BANDA002/dwi/sub-BANDA002_run-dir98_AP_dwi.nii.gz... niiRead(): detected input as 64 bit double, reading in as 32 bit float TR=3230.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig.1.nii.gz... rm -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig.2.bvals /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig.2.bvecs mri_convert --bvec-voxel /autofs/space/nyx_002/users/edann/test_tutorial/bids_cm/sub-BANDA002/dwi/sub-BANDA002_run-dir98_PA_dwi.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig.2.nii.gz mri_convert --bvec-voxel /autofs/space/nyx_002/users/edann/test_tutorial/bids_cm/sub-BANDA002/dwi/sub-BANDA002_run-dir98_PA_dwi.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig.2.nii.gz reading from /autofs/space/nyx_002/users/edann/test_tutorial/bids_cm/sub-BANDA002/dwi/sub-BANDA002_run-dir98_PA_dwi.nii.gz... niiRead(): detected input as 64 bit double, reading in as 32 bit float TR=3230.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig.2.nii.gz... rm -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig.3.bvals /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig.3.bvecs mri_convert --bvec-voxel /autofs/space/nyx_002/users/edann/test_tutorial/bids_cm/sub-BANDA002/dwi/sub-BANDA002_run-dir99_AP_dwi.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig.3.nii.gz mri_convert --bvec-voxel /autofs/space/nyx_002/users/edann/test_tutorial/bids_cm/sub-BANDA002/dwi/sub-BANDA002_run-dir99_AP_dwi.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig.3.nii.gz reading from /autofs/space/nyx_002/users/edann/test_tutorial/bids_cm/sub-BANDA002/dwi/sub-BANDA002_run-dir99_AP_dwi.nii.gz... niiRead(): detected input as 64 bit double, reading in as 32 bit float TR=3230.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995826, -0.0529529, -0.0743461) j_ras = (-0.0776736, 0.919414, 0.385545) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig.3.nii.gz... rm -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig.4.bvals /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig.4.bvecs mri_convert --bvec-voxel /autofs/space/nyx_002/users/edann/test_tutorial/bids_cm/sub-BANDA002/dwi/sub-BANDA002_run-dir99_PA_dwi.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig.4.nii.gz mri_convert --bvec-voxel /autofs/space/nyx_002/users/edann/test_tutorial/bids_cm/sub-BANDA002/dwi/sub-BANDA002_run-dir99_PA_dwi.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig.4.nii.gz reading from /autofs/space/nyx_002/users/edann/test_tutorial/bids_cm/sub-BANDA002/dwi/sub-BANDA002_run-dir99_PA_dwi.nii.gz... niiRead(): detected input as 64 bit double, reading in as 32 bit float TR=3230.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995826, -0.0529529, -0.0743461) j_ras = (-0.0776736, 0.919414, 0.385545) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig.4.nii.gz... rm -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig.1.bvals.tmp /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig.1.bvecs.tmp mv -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig.1.bvecs.tmp /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig.1.bvecs mv -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig.1.bvals.tmp /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig.1.bvals orientLAS /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig.1.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig_las.1.nii.gz INFO: input image orientation is LAS INFO: input image determinant is -3.375 mri_convert -oni 140 -onj 140 -onk 92 -oid -0.995812 -0.0531134 -0.0744134 -ojd -0.0778475 0.919405 0.385532 -okd -0.0479391 -0.38971 0.919689 -oc -4.77643 9.90566 -0.256561 -rt nearest /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig.1.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig_las.1.nii.gz mri_convert -oni 140 -onj 140 -onk 92 -oid -0.995812 -0.0531134 -0.0744134 -ojd -0.0778475 0.919405 0.385532 -okd -0.0479391 -0.38971 0.919689 -oc -4.77643 9.90566 -0.256561 -rt nearest /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig.1.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig_las.1.nii.gz normalizing out_i_direction: (-0.995812, -0.0531134, -0.0744134) -> (-0.995812, -0.0531134, -0.0744134) normalizing out_j_direction: (-0.0778475, 0.919405, 0.385532) -> (-0.0778475, 0.919405, 0.385532) normalizing out_k_direction: (-0.0479391, -0.38971, 0.919689) -> (-0.0479391, -0.38971, 0.919689) reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig.1.nii.gz... TR=3230.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig_las.1.nii.gz... INFO: found /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig.1.bvals, copying INFO: found /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig.1.bvecs, converting to LAS rm -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig.2.bvals.tmp /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig.2.bvecs.tmp mv -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig.2.bvecs.tmp /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig.2.bvecs mv -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig.2.bvals.tmp /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig.2.bvals orientLAS /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig.2.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig_las.2.nii.gz INFO: input image orientation is LAS INFO: input image determinant is -3.375 mri_convert -oni 140 -onj 140 -onk 92 -oid -0.995812 -0.0531134 -0.0744134 -ojd -0.0778475 0.919405 0.385532 -okd -0.0479391 -0.38971 0.919689 -oc -4.77643 9.90566 -0.256561 -rt nearest /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig.2.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig_las.2.nii.gz mri_convert -oni 140 -onj 140 -onk 92 -oid -0.995812 -0.0531134 -0.0744134 -ojd -0.0778475 0.919405 0.385532 -okd -0.0479391 -0.38971 0.919689 -oc -4.77643 9.90566 -0.256561 -rt nearest /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig.2.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig_las.2.nii.gz normalizing out_i_direction: (-0.995812, -0.0531134, -0.0744134) -> (-0.995812, -0.0531134, -0.0744134) normalizing out_j_direction: (-0.0778475, 0.919405, 0.385532) -> (-0.0778475, 0.919405, 0.385532) normalizing out_k_direction: (-0.0479391, -0.38971, 0.919689) -> (-0.0479391, -0.38971, 0.919689) reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig.2.nii.gz... TR=3230.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig_las.2.nii.gz... INFO: found /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig.2.bvals, copying INFO: found /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig.2.bvecs, converting to LAS rm -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig.3.bvals.tmp /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig.3.bvecs.tmp mv -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig.3.bvecs.tmp /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig.3.bvecs mv -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig.3.bvals.tmp /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig.3.bvals orientLAS /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig.3.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig_las.3.nii.gz INFO: input image orientation is LAS INFO: input image determinant is -3.375 mri_convert -oni 140 -onj 140 -onk 92 -oid -0.995826 -0.0529529 -0.0743461 -ojd -0.0776736 0.919414 0.385545 -okd -0.0479391 -0.38971 0.919689 -oc -4.77622 9.90561 -0.256538 -rt nearest /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig.3.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig_las.3.nii.gz mri_convert -oni 140 -onj 140 -onk 92 -oid -0.995826 -0.0529529 -0.0743461 -ojd -0.0776736 0.919414 0.385545 -okd -0.0479391 -0.38971 0.919689 -oc -4.77622 9.90561 -0.256538 -rt nearest /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig.3.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig_las.3.nii.gz normalizing out_i_direction: (-0.995826, -0.0529529, -0.0743461) -> (-0.995826, -0.0529529, -0.0743461) normalizing out_j_direction: (-0.0776736, 0.919414, 0.385545) -> (-0.0776736, 0.919414, 0.385545) normalizing out_k_direction: (-0.0479391, -0.38971, 0.919689) -> (-0.0479391, -0.38971, 0.919689) reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig.3.nii.gz... TR=3230.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995826, -0.0529529, -0.0743461) j_ras = (-0.0776736, 0.919414, 0.385545) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig_las.3.nii.gz... INFO: found /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig.3.bvals, copying INFO: found /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig.3.bvecs, converting to LAS rm -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig.4.bvals.tmp /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig.4.bvecs.tmp mv -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig.4.bvecs.tmp /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig.4.bvecs mv -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig.4.bvals.tmp /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig.4.bvals orientLAS /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig.4.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig_las.4.nii.gz INFO: input image orientation is LAS INFO: input image determinant is -3.375 mri_convert -oni 140 -onj 140 -onk 92 -oid -0.995826 -0.0529529 -0.0743461 -ojd -0.0776736 0.919414 0.385545 -okd -0.0479391 -0.38971 0.919689 -oc -4.77622 9.90561 -0.256538 -rt nearest /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig.4.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig_las.4.nii.gz mri_convert -oni 140 -onj 140 -onk 92 -oid -0.995826 -0.0529529 -0.0743461 -ojd -0.0776736 0.919414 0.385545 -okd -0.0479391 -0.38971 0.919689 -oc -4.77622 9.90561 -0.256538 -rt nearest /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig.4.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig_las.4.nii.gz normalizing out_i_direction: (-0.995826, -0.0529529, -0.0743461) -> (-0.995826, -0.0529529, -0.0743461) normalizing out_j_direction: (-0.0776736, 0.919414, 0.385545) -> (-0.0776736, 0.919414, 0.385545) normalizing out_k_direction: (-0.0479391, -0.38971, 0.919689) -> (-0.0479391, -0.38971, 0.919689) reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig.4.nii.gz... TR=3230.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995826, -0.0529529, -0.0743461) j_ras = (-0.0776736, 0.919414, 0.385545) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig_las.4.nii.gz... INFO: found /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig.4.bvals, copying INFO: found /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig.4.bvecs, converting to LAS mri_convert --frame 0 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig_las.1.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/lowb_orig_las.1.nii.gz mri_convert --frame 0 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig_las.1.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/lowb_orig_las.1.nii.gz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig_las.1.nii.gz... TR=3230.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) keeping frame 0 writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/lowb_orig_las.1.nii.gz... mri_convert --frame 0 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig_las.2.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/lowb_orig_las.2.nii.gz mri_convert --frame 0 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig_las.2.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/lowb_orig_las.2.nii.gz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig_las.2.nii.gz... TR=3230.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) keeping frame 0 writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/lowb_orig_las.2.nii.gz... mri_convert --frame 0 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig_las.3.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/lowb_orig_las.3.nii.gz mri_convert --frame 0 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig_las.3.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/lowb_orig_las.3.nii.gz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig_las.3.nii.gz... TR=3230.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995826, -0.0529529, -0.0743461) j_ras = (-0.0776736, 0.919414, 0.385545) k_ras = (-0.0479391, -0.38971, 0.919689) keeping frame 0 writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/lowb_orig_las.3.nii.gz... mri_convert --frame 0 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig_las.4.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/lowb_orig_las.4.nii.gz mri_convert --frame 0 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig_las.4.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/lowb_orig_las.4.nii.gz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig_las.4.nii.gz... TR=3230.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995826, -0.0529529, -0.0743461) j_ras = (-0.0776736, 0.919414, 0.385545) k_ras = (-0.0479391, -0.38971, 0.919689) keeping frame 0 writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/lowb_orig_las.4.nii.gz... mri_concat --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/lowb_orig_las.1.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/lowb_orig_las.2.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/lowb_orig_las.3.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/lowb_orig_las.4.nii.gz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/lowb_orig_las.nii.gz ninputs = 4 Checking inputs nframestot = 4 Allocing output Done allocing nframes = 4 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/lowb_orig_las.nii.gz cp -p /usr/pubsw/packages/fsl/6.0.4//src/topup/flirtsch/b02b0.cnf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri topup --imain=/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/lowb_orig_las.nii.gz --datain=/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/acqp.txt --config=/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/b02b0.cnf --out=/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/topup --iout=/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/lowb_topup.nii.gz mri_concat --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig_las.1.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig_las.2.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig_las.3.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig_las.4.nii.gz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig_las.nii.gz ninputs = 4 Checking inputs nframestot = 398 Allocing output Done allocing nframes = 398 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig_las.nii.gz cat /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig_las.1.bvecs /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig_las.2.bvecs /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig_las.3.bvecs /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig_las.4.bvecs > /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig_las.bvecs cat /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig_las.1.bvals /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig_las.2.bvals /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig_las.3.bvals /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig_las.4.bvals > /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig_las.bvals mri_concat --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/lowb_topup.nii.gz --mean --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/lowb_topup.nii.gz ninputs = 1 Checking inputs nframestot = 4 Allocing output Done allocing nframes = 4 Computing mean across frames Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/lowb_topup.nii.gz bet /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/lowb_topup.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/lowb_topup_brain.nii.gz -m -f 0.3 eddy_openmp --imain=/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig_las.nii.gz --mask=/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/lowb_topup_brain_mask.nii.gz --bvecs=/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig_las.bvecs --bvals=/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig_las.bvals --acqp=/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/acqp.txt --index=/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/index.txt --data_is_shelled --topup=/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/topup --out=/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi xfmrot /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi.eddy_parameters /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig_las.bvecs /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi.bvecs cp -p /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig_las.bvals /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi.bvals mri_convert --in_like /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig_las.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi.nii.gz mri_convert --in_like /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig_las.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi.nii.gz reading info from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig_las.nii.gz... reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi.nii.gz... TR=3230.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi.nii.gz... rm -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi.full.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi.bvecs.full /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi.bvals.full mri_convert --frame 0 1 17 33 49 65 81 99 100 116 132 148 164 180 198 199 215 231 247 263 279 298 299 315 331 347 363 379 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/lowb.nii.gz mri_convert --frame 0 1 17 33 49 65 81 99 100 116 132 148 164 180 198 199 215 231 247 263 279 298 299 315 331 347 363 379 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/lowb.nii.gz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi.nii.gz... TR=3230.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) keeping frames 0 1 17 33 49 65 81 99 100 116 132 148 164 180 198 199 215 231 247 263 279 298 299 315 331 347 363 379 writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/lowb.nii.gz... mri_concat --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/lowb.nii.gz --mean --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/lowb.nii.gz ninputs = 1 Checking inputs nframestot = 28 Allocing output Done allocing nframes = 28 Computing mean across frames Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/lowb.nii.gz bet /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/lowb.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/lowb_brain.nii.gz -m -f 0.3 mv -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/lowb_brain_mask.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff #------------------------------------- #@# DWI set selection Wed Jul 12 22:45:45 EDT 2023 ln -sf dwi.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/data.nii.gz ln -sf dwi.bvecs /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/bvecs ln -sf dwi.bvals /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/bvals #------------------------------------- #@# Image quality assessment Wed Jul 12 22:45:45 EDT 2023 /usr/local/freesurfer/7.3.2/bin/dmri_motion --mat /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi.eddy_parameters --dwi /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig.1.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig.2.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig.3.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig.4.nii.gz --bval /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig.1.bvals /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig.2.bvals /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig.3.bvals /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig.4.bvals --T 3361.393555 --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_motion.txt --outf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_motion_byvol.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2/bin/dmri_motion --mat /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi.eddy_parameters --dwi /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig.1.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig.2.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig.3.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig.4.nii.gz --bval /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig.1.bvals /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig.2.bvals /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig.3.bvals /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig.4.bvals --T 3361.393555 --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_motion.txt --outf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_motion_byvol.txt sysname Linux hostname curie.nmr.mgh.harvard.edu machine x86_64 user cy281 Output motion measure file: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_motion.txt Output frame-by-frame motion measure file: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_motion_byvol.txt Input transform file: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi.eddy_parameters Input DWI file(s): /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig.1.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig.2.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig.3.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig.4.nii.gz Input b-value table(s): /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig.1.bvals /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig.2.bvals /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig.3.bvals /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig.4.bvals Low-b image intensity threshold: 3361.39 Nominal diffusivity: 0.001 Loading DWI volume series from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig.1.nii.gz Loading b-value table from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig.1.bvals Computing within-volume head motion measures Loading DWI volume series from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig.2.nii.gz Loading b-value table from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig.2.bvals Computing within-volume head motion measures Loading DWI volume series from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig.3.nii.gz Loading b-value table from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig.3.bvals Computing within-volume head motion measures Loading DWI volume series from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig.4.nii.gz Loading b-value table from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_orig.4.bvals Computing within-volume head motion measures Loading volume-to-baseline affine transformations Computing between-volume head motion measures INFO: Processed transforms for 398 volumes Done in 38.44 sec. dmri_motion done #------------------------------------- #@# Intra-subject registration Wed Jul 12 22:46:24 EDT 2023 bbregister --s sub-BANDA002 --init-fsl --dti --6 --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/lowb.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta tmp /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/tmp.bbregister.54148 Log file is /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.log Wed Jul 12 22:46:24 EDT 2023 setenv SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2/bin/bbregister --s sub-BANDA002 --init-fsl --dti --6 --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/lowb.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta bbregister 7.3.2 Linux curie.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux FREESURFER_HOME /usr/local/freesurfer/7.3.2 mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/lowb.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/tmp.bbregister.54148/template.nii mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/lowb.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/tmp.bbregister.54148/template.nii reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/lowb.nii.gz... TR=3230.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/tmp.bbregister.54148/template.nii... fslregister --s sub-BANDA002 --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/tmp.bbregister.54148/template.nii --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/tmp.bbregister.54148/reg.init.dat --niters 1 --maxangle 90 --tmp /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/tmp.bbregister.54148/fslregister --dof 6 --fsvol brainmask.mgz --nobetmov Log file is /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/tmp.bbregister.54148/reg.init.dat.fslregister.log Wed Jul 12 22:46:24 EDT 2023 --s sub-BANDA002 --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/tmp.bbregister.54148/template.nii --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/tmp.bbregister.54148/reg.init.dat --niters 1 --maxangle 90 --tmp /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/tmp.bbregister.54148/fslregister --dof 6 --fsvol brainmask.mgz --nobetmov fslregister 7.3.2 curie.nmr.mgh.harvard.edu Linux curie.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux nIters 1 -------------------------------------- /autofs/space/nyx_002/users/edann/test_tutorial mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/mri/brainmask.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/tmp.bbregister.54148/fslregister/refvol.fslregister.nii mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/mri/brainmask.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/tmp.bbregister.54148/fslregister/refvol.fslregister.nii reading from /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/mri/brainmask.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 1.11759e-08, 0) j_ras = (0, 0, -1) k_ras = (-3.72529e-09, 1, 2.32831e-09) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/tmp.bbregister.54148/fslregister/refvol.fslregister.nii... -------------------------------------- /autofs/space/nyx_002/users/edann/test_tutorial mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/tmp.bbregister.54148/template.nii /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/tmp.bbregister.54148/fslregister/movvol.fslregister.nii --frame 0 mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/tmp.bbregister.54148/template.nii /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/tmp.bbregister.54148/fslregister/movvol.fslregister.nii --frame 0 reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/tmp.bbregister.54148/template.nii... TR=3230.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) keeping frame 0 writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/tmp.bbregister.54148/fslregister/movvol.fslregister.nii... Mov determinant is -3.375 /autofs/space/nyx_002/users/edann/test_tutorial tkregister2_cmdl --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/tmp.bbregister.54148/fslregister/movvol.fslregister.nii --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/tmp.bbregister.54148/fslregister/reg0.54189.dat --targ brainmask --fstarg --regheader --fslregout /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/tmp.bbregister.54148/reg.init.dat.fsl.mat0 --s sub-BANDA002 --noedit target volume brainmask movable volume /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/tmp.bbregister.54148/fslregister/movvol.fslregister.nii reg file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/tmp.bbregister.54148/fslregister/reg0.54189.dat LoadVol 0 ZeroCRAS 0 7.3.2 Diagnostic Level -1 INFO: loading target /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/mri/brainmask.mgz Ttarg: -------------------- -1.00000 0.00000 0.00000 128.00000; 0.00000 0.00000 1.00000 -128.00000; 0.00000 -1.00000 0.00000 128.00000; 0.00000 0.00000 0.00000 1.00000; INFO: loading movable /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/tmp.bbregister.54148/fslregister/movvol.fslregister.nii Tmov: -------------------- -1.50000 0.00000 0.00000 105.00000; 0.00000 0.00000 1.50000 -69.00000; 0.00000 -1.50000 0.00000 105.00000; 0.00000 0.00000 0.00000 1.00000; mkheaderreg = 1, float2int = 0 Computing reg from header (and possibly input matrix) ---- Input registration matrix (computed) -------- 0.99581 0.05311 0.07441 -0.39890; -0.04794 -0.38971 0.91969 -23.81850; 0.07785 -0.91940 -0.38553 -8.84590; 0.00000 0.00000 0.00000 1.00000; --------------------------------------- ---- Input registration matrix -------- 0.99581 0.05311 0.07441 -0.39890; -0.04794 -0.38971 0.91969 -23.81850; 0.07785 -0.91940 -0.38553 -8.84590; 0.00000 0.00000 0.00000 1.00000; Determinant 1 subject = sub-BANDA002 RegMat --------------------------- 0.99581 0.05311 0.07441 -0.39890; -0.04794 -0.38971 0.91969 -23.81850; 0.07785 -0.91940 -0.38553 -8.84590; 0.00000 0.00000 0.00000 1.00000; FSLOUTPUTTYPE NIFTI tkreg2FSL: mov det = -3.375, ref det = -1 Wed Jul 12 22:46:25 EDT 2023 /autofs/space/nyx_002/users/edann/test_tutorial flirt.fsl -ref /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/tmp.bbregister.54148/fslregister/refvol.fslregister.nii -in /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/tmp.bbregister.54148/fslregister/movvol.fslregister.nii -bins 256 -cost corratio -dof 6 -searchrx -90 90 -searchry -90 90 -searchrz -90 90 -verbose 0 -omat /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/tmp.bbregister.54148/fslregister/fslmat0.trans.mat -schedule /usr/local/freesurfer/7.3.2/bin/fsl.5.0.2.xyztrans.sch -init /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/tmp.bbregister.54148/reg.init.dat.fsl.mat0 Wed Jul 12 22:46:34 EDT 2023 /autofs/space/nyx_002/users/edann/test_tutorial flirt.fsl -ref /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/tmp.bbregister.54148/fslregister/refvol.fslregister.nii -in /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/tmp.bbregister.54148/fslregister/movvol.fslregister.nii -bins 256 -cost corratio -dof 6 -searchrx -90 90 -searchry -90 90 -searchrz -90 90 -verbose 0 -omat /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/tmp.bbregister.54148/reg.init.dat.fsl.mat -init /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/tmp.bbregister.54148/fslregister/fslmat0.trans.mat -schedule /usr/local/freesurfer/7.3.2/bin/flirt.newdefault.20080811.sch tkregister2_cmdl --s sub-BANDA002 --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/tmp.bbregister.54148/template.nii --targ brainmask --fstarg --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/tmp.bbregister.54148/reg.init.dat --fslreg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/tmp.bbregister.54148/reg.init.dat.fsl.mat --noedit ---- FSL registration matrix -------- 0.99615 0.07404 0.04701 11.72650; 0.07356 -0.41353 -0.90751 206.10201; -0.04775 0.90748 -0.41738 49.17200; 0.00000 0.00000 0.00000 1.00000; --------------------------------------- target volume brainmask movable volume /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/tmp.bbregister.54148/template.nii reg file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/tmp.bbregister.54148/reg.init.dat LoadVol 0 ZeroCRAS 0 7.3.2 Diagnostic Level -1 INFO: loading target /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/mri/brainmask.mgz Ttarg: -------------------- -1.00000 0.00000 0.00000 128.00000; 0.00000 0.00000 1.00000 -128.00000; 0.00000 -1.00000 0.00000 128.00000; 0.00000 0.00000 0.00000 1.00000; INFO: loading movable /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/tmp.bbregister.54148/template.nii Tmov: -------------------- -1.50000 0.00000 0.00000 105.00000; 0.00000 0.00000 1.50000 -69.00000; 0.00000 -1.50000 0.00000 105.00000; 0.00000 0.00000 0.00000 1.00000; mkheaderreg = 0, float2int = 0 FSLOUTPUTTYPE NIFTI fsl2TkReg: mov det = -3.375, ref det = -1 ---- Input registration matrix (computed) -------- 0.99615 0.04775 0.07356 -1.31587; -0.04701 -0.41738 0.90751 -25.55643; 0.07404 -0.90748 -0.41353 -7.44051; 0.00000 0.00000 0.00000 1.00000; --------------------------------------- ---- Input registration matrix -------- 0.99615 0.04775 0.07356 -1.31587; -0.04701 -0.41738 0.90751 -25.55643; 0.07404 -0.90748 -0.41353 -7.44051; 0.00000 0.00000 0.00000 1.00000; Determinant 0.999999 subject = sub-BANDA002 RegMat --------------------------- 0.99615 0.04775 0.07356 -1.31587; -0.04701 -0.41738 0.90751 -25.55643; 0.07404 -0.90748 -0.41353 -7.44051; 0.00000 0.00000 0.00000 1.00000; (standard_in) 1: illegal character: N (standard_in) 1: syntax error Started at Wed Jul 12 22:46:24 EDT 2023 Ended at Wed Jul 12 22:46:49 EDT 2023 fslregister Done To check results, run: tkregisterfv --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/tmp.bbregister.54148/template.nii --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/tmp.bbregister.54148/reg.init.dat --surf orig mri_segreg --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/tmp.bbregister.54148/template.nii --init-reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/tmp.bbregister.54148/reg.init.dat --out-reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/tmp.bbregister.54148/bbr.pass1.dat --subsamp-brute 100 --subsamp 100 --tol 1e-4 --tol1d 1e-3 --brute -4 4 4 --surf white --gm-proj-frac 0.5 --gm-gt-wm 0.5 7.3.2 setenv SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs cd /autofs/space/nyx_002/users/edann/test_tutorial mri_segreg --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/tmp.bbregister.54148/template.nii --init-reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/tmp.bbregister.54148/reg.init.dat --out-reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/tmp.bbregister.54148/bbr.pass1.dat --subsamp-brute 100 --subsamp 100 --tol 1e-4 --tol1d 1e-3 --brute -4 4 4 --surf white --gm-proj-frac 0.5 --gm-gt-wm 0.5 sysname Linux hostname curie.nmr.mgh.harvard.edu machine x86_64 user cy281 movvol /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/tmp.bbregister.54148/template.nii regfile /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/tmp.bbregister.54148/reg.init.dat subject sub-BANDA002 dof 6 outregfile /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/tmp.bbregister.54148/bbr.pass1.dat UseMask 0 UseLH 1 UseRH 1 nsubsamp 100 PenaltySign -1 PenaltySlope 0.500000 PenaltyCenter 0.000000 surfname white GMProjFrac 0.500000 WMProjAbs 2.000000 lhcostfile (null) rhcostfile (null) interp trilinear (1) frame 0 TolPowell 0.000100 nMaxItersPowell 36 n1dmin 3 Profile 0 Gdiag_no -1 AddNoise 0 (0) SynthSeed 1689872973 TransRandMax 0.000000 RotRandMax 0.000000 Translations 0.000000 0.000000 0.000000 Rotations 0.000000 0.000000 0.000000 Input reg 0.99615 0.04775 0.07356 -1.31587; -0.04701 -0.41738 0.90751 -25.55643; 0.07404 -0.90748 -0.41353 -7.44051; 0.00000 0.00000 0.00000 1.00000; Loading mov ExcludeZeroVoxels 1 Reading in targ vol /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/mri/orig.mgz Projecting LH Surfs Loading lh.white surf Loading lh.thickness for GM GM Proj: 1 0.500000 2.000000 WM Proj: 0 0.500000 2.000000 Projecting RH Surfs Loading rh.white surf Loading rh.thickness for GM Projecting RH Surfs Using lh.cortex.label Using rh.cortex.label Computing relative cost 0 -25.0 -25.0 -25.0 0.963193 1 -25.0 -25.0 25.0 0.975839 2 -25.0 25.0 -25.0 0.980628 3 -25.0 25.0 25.0 0.958914 4 25.0 -25.0 -25.0 1.013025 5 25.0 -25.0 25.0 0.977071 6 25.0 25.0 -25.0 1.021813 7 25.0 25.0 25.0 0.988170 REL: 8 0.154967 7.878653 0.984832 rel = 0.157353 Initial costs ---------------- Number of surface hits 2434 WM Intensity 5402.7431 +/- 1640.0735 Ctx Intensity 6698.5086 +/- 1769.9045 Pct Contrast 22.2075 +/- 16.8748 Cost 0.1550 RelCost 0.1574 ------------------------------------ Brute force preopt -4 4 4, n = 729 0 -4.0000 -4.0000 -4.0000 -4.0000 -4.0000 -4.0000 0.9803 0.9803 0.0 1 -4.0000 -4.0000 -4.0000 -4.0000 -4.0000 0.0000 0.9500 0.9500 0.0 2 -4.0000 -4.0000 -4.0000 -4.0000 -4.0000 4.0000 0.9328 0.9328 0.0 7 -4.0000 -4.0000 -4.0000 -4.0000 4.0000 0.0000 0.8997 0.8997 0.0 15 -4.0000 -4.0000 -4.0000 0.0000 4.0000 -4.0000 0.8681 0.8681 0.0 33 -4.0000 -4.0000 0.0000 -4.0000 4.0000 -4.0000 0.8532 0.8532 0.0 34 -4.0000 -4.0000 0.0000 -4.0000 4.0000 0.0000 0.8521 0.8521 0.0 118 -4.0000 0.0000 0.0000 0.0000 -4.0000 0.0000 0.8236 0.8236 0.0 120 -4.0000 0.0000 0.0000 0.0000 0.0000 -4.0000 0.8183 0.8183 0.0 124 -4.0000 0.0000 0.0000 0.0000 4.0000 0.0000 0.7825 0.7825 0.0 274 0.0000 -4.0000 0.0000 -4.0000 0.0000 0.0000 0.7075 0.7075 0.0 292 0.0000 -4.0000 0.0000 4.0000 0.0000 0.0000 0.7067 0.7067 0.0 361 0.0000 0.0000 0.0000 0.0000 -4.0000 0.0000 0.6671 0.6671 0.0 363 0.0000 0.0000 0.0000 0.0000 0.0000 -4.0000 0.6021 0.6021 0.0 364 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.1550 0.1550 0.0 Brute Force -------------------------- Min cost was 0.154967 Number of iterations 729 Search time 1.012657 sec Parameters at best (transmm, rotdeg) 0.000 0.000 0.000 0.000 0.000 0.000 -------------------------------------------- Starting Powell Minimization Init Powel Params dof = 6 0 0 1 0 2 0 3 0 4 0 5 0 fs_powell::minimize nparams 6 maxfev 36 ftol 0.000100 linmin_xtol_ 0.001000 powell nthiter 0: fret = 0.154967 7 0.030 0.000 0.000 0.000 0.000 0.000 0.1539449581 8 0.104 0.000 0.000 0.000 0.000 0.000 0.1525413685 10 0.115 0.000 0.000 0.000 0.000 0.000 0.1524311591 12 0.133 0.000 0.000 0.000 0.000 0.000 0.1523449172 20 0.133 -0.618 0.000 0.000 0.000 0.000 0.1090512621 22 0.133 -0.571 0.000 0.000 0.000 0.000 0.1089035424 23 0.133 -0.583 0.000 0.000 0.000 0.000 0.1088802667 24 0.133 -0.584 0.000 0.000 0.000 0.000 0.1088800081 32 0.133 -0.584 0.090 0.000 0.000 0.000 0.1087494281 33 0.133 -0.584 0.053 0.000 0.000 0.000 0.1086568651 35 0.133 -0.584 0.033 0.000 0.000 0.000 0.1086444806 36 0.133 -0.584 0.041 0.000 0.000 0.000 0.1086388514 37 0.133 -0.584 0.040 0.000 0.000 0.000 0.1086388029 45 0.133 -0.584 0.040 0.179 0.000 0.000 0.1063248657 46 0.133 -0.584 0.040 0.173 0.000 0.000 0.1062532690 47 0.133 -0.584 0.040 0.135 0.000 0.000 0.1060106087 51 0.133 -0.584 0.040 0.134 0.000 0.000 0.1060104777 61 0.133 -0.584 0.040 0.134 -0.055 0.000 0.1053751786 62 0.133 -0.584 0.040 0.134 -0.056 0.000 0.1053749006 70 0.133 -0.584 0.040 0.134 -0.056 0.105 0.1046487815 72 0.133 -0.584 0.040 0.134 -0.056 0.102 0.1046470104 75 0.133 -0.584 0.040 0.134 -0.056 0.096 0.1046465710 76 0.133 -0.584 0.040 0.134 -0.056 0.098 0.1046464032 powell nthiter 1: fret = 0.104646 87 0.164 -0.584 0.040 0.134 -0.056 0.098 0.1045950662 88 0.152 -0.584 0.040 0.134 -0.056 0.098 0.1045435034 99 0.152 -0.606 0.040 0.134 -0.056 0.098 0.1045397912 100 0.152 -0.596 0.040 0.134 -0.056 0.098 0.1045278067 109 0.152 -0.596 0.069 0.134 -0.056 0.098 0.1042127926 110 0.152 -0.596 0.091 0.134 -0.056 0.098 0.1040944372 112 0.152 -0.596 0.107 0.134 -0.056 0.098 0.1040933279 113 0.152 -0.596 0.099 0.134 -0.056 0.098 0.1040834729 114 0.152 -0.596 0.098 0.134 -0.056 0.098 0.1040833114 126 0.152 -0.596 0.098 0.136 -0.056 0.098 0.1040819465 127 0.152 -0.596 0.098 0.137 -0.056 0.098 0.1040819352 136 0.152 -0.596 0.098 0.137 -0.046 0.098 0.1040540270 138 0.152 -0.596 0.098 0.137 -0.044 0.098 0.1040536290 146 0.152 -0.596 0.098 0.137 -0.044 0.084 0.1040514820 148 0.152 -0.596 0.098 0.137 -0.044 0.085 0.1040514063 149 0.152 -0.596 0.098 0.137 -0.044 0.086 0.1040510979 powell nthiter 2: fret = 0.104051 160 0.139 -0.596 0.098 0.137 -0.044 0.086 0.1039853241 162 0.140 -0.596 0.098 0.137 -0.044 0.086 0.1039848568 174 0.140 -0.599 0.098 0.137 -0.044 0.086 0.1039837009 195 0.140 -0.599 0.098 0.136 -0.044 0.086 0.1039834932 213 0.140 -0.599 0.098 0.136 -0.044 0.087 0.1039811781 214 0.140 -0.599 0.098 0.136 -0.044 0.103 0.1039684384 216 0.140 -0.599 0.098 0.136 -0.044 0.099 0.1039683881 218 0.140 -0.599 0.098 0.136 -0.044 0.100 0.1039683044 219 0.140 -0.599 0.098 0.136 -0.044 0.101 0.1039682403 220 0.127 -0.602 0.098 0.135 -0.044 0.117 0.1039497044 226 0.132 -0.601 0.098 0.136 -0.044 0.111 0.1039485064 227 0.130 -0.601 0.098 0.136 -0.044 0.113 0.1039472772 228 0.130 -0.601 0.098 0.136 -0.044 0.113 0.1039472191 230 0.130 -0.601 0.098 0.136 -0.044 0.113 0.1039470704 232 0.130 -0.601 0.098 0.136 -0.044 0.113 0.1039469843 233 0.130 -0.601 0.098 0.136 -0.044 0.113 0.1039469771 234 0.130 -0.601 0.098 0.136 -0.044 0.113 0.1039469660 powell nthiter 3: fret = 0.103947 244 0.130 -0.601 0.098 0.136 -0.044 0.122 0.1039443747 246 0.130 -0.601 0.098 0.136 -0.044 0.120 0.1039442140 266 0.130 -0.601 0.100 0.136 -0.044 0.120 0.1039438174 277 0.130 -0.601 0.100 0.140 -0.044 0.120 0.1039382738 279 0.130 -0.601 0.100 0.141 -0.044 0.120 0.1039377601 288 0.130 -0.601 0.100 0.141 -0.040 0.120 0.1039351350 289 0.130 -0.601 0.100 0.141 -0.041 0.120 0.1039349021 297 0.129 -0.601 0.100 0.141 -0.041 0.121 0.1039346909 301 0.129 -0.601 0.100 0.141 -0.041 0.121 0.1039344846 303 0.129 -0.601 0.100 0.141 -0.041 0.121 0.1039343975 powell nthiter 4: fret = 0.103934 315 0.129 -0.601 0.100 0.141 -0.041 0.125 0.1039341479 316 0.129 -0.601 0.100 0.141 -0.041 0.124 0.1039341065 326 0.129 -0.600 0.100 0.141 -0.041 0.124 0.1039338560 337 0.129 -0.600 0.101 0.141 -0.041 0.124 0.1039336748 348 0.129 -0.600 0.101 0.142 -0.041 0.124 0.1039335946 358 0.129 -0.600 0.101 0.142 -0.039 0.124 0.1039333678 372 0.129 -0.600 0.101 0.142 -0.039 0.124 0.1039333659 373 0.129 -0.600 0.101 0.142 -0.039 0.124 0.1039333606 Powell done niters = 4 Computing relative cost 0 -25.0 -25.0 -25.0 0.968600 1 -25.0 -25.0 25.0 0.976477 2 -25.0 25.0 -25.0 0.993285 3 -25.0 25.0 25.0 0.968564 4 25.0 -25.0 -25.0 1.012746 5 25.0 -25.0 25.0 0.966736 6 25.0 25.0 -25.0 1.014413 7 25.0 25.0 25.0 0.994034 REL: 8 0.103933 7.894855 0.986857 rel = 0.105318 Number of iterations 4 Min cost was 0.103933 Number of FunctionCalls 374 TolPowell 0.000100 nMaxItersPowell 36 OptimizationTime 0.520887 sec Parameters at optimum (transmm) 0.12894 -0.60019 0.10083 Parameters at optimum (rotdeg) 0.14237 -0.03930 0.12383 Final costs ---------------- Number of surface hits 2434 WM Intensity 5344.0078 +/- 1609.5279 Ctx Intensity 6659.7136 +/- 1736.1276 Pct Contrast 22.7452 +/- 16.1551 Cost 0.1039 RelCost 0.1574 Reg at min cost was 0.99620 0.04927 0.07188 -1.12659; -0.04504 -0.41502 0.90870 -26.14082; 0.07460 -0.90848 -0.41122 -7.40405; 0.00000 0.00000 0.00000 1.00000; Writing optimal reg to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/tmp.bbregister.54148/bbr.pass1.dat, type = 14 Original Reg 0.99615 0.04775 0.07356 -1.31587; -0.04701 -0.41738 0.90751 -25.55643; 0.07404 -0.90748 -0.41353 -7.44051; 0.00000 0.00000 0.00000 1.00000; Original Reg - Optimal Reg -0.00005 -0.00152 0.00168 -0.18929; -0.00197 -0.00236 -0.00118 0.58440; -0.00057 0.00100 -0.00231 -0.03645; 0.00000 0.00000 0.00000 0.00000; Computing change in lh position LH rmsDiffMean 0.699537 Computing change in rh position Surface-RMS-Diff-mm 0.648602 0.102409 0.860576 mri_segreg done mri_segreg --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/tmp.bbregister.54148/template.nii --init-reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/tmp.bbregister.54148/bbr.pass1.dat --out-reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.dat --interp trilinear --wm-proj-abs 2 --tol 1e-8 --tol1d 1e-3 --c0 0 --mincost /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.dat.mincost --dof 6 --nmax 36 --param /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.dat.param --surf white --brute -0.1 0.1 0.1 --cur-reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/tmp.bbregister.54148/reg.curopt.dat --gm-proj-frac 0.5 --nsub 1 --gm-gt-wm 0.5 7.3.2 setenv SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs cd /autofs/space/nyx_002/users/edann/test_tutorial mri_segreg --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/tmp.bbregister.54148/template.nii --init-reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/tmp.bbregister.54148/bbr.pass1.dat --out-reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.dat --interp trilinear --wm-proj-abs 2 --tol 1e-8 --tol1d 1e-3 --c0 0 --mincost /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.dat.mincost --dof 6 --nmax 36 --param /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.dat.param --surf white --brute -0.1 0.1 0.1 --cur-reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/tmp.bbregister.54148/reg.curopt.dat --gm-proj-frac 0.5 --nsub 1 --gm-gt-wm 0.5 sysname Linux hostname curie.nmr.mgh.harvard.edu machine x86_64 user cy281 movvol /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/tmp.bbregister.54148/template.nii regfile /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/tmp.bbregister.54148/bbr.pass1.dat subject sub-BANDA002 dof 6 outregfile /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.dat UseMask 0 UseLH 1 UseRH 1 nsubsamp 1 PenaltySign -1 PenaltySlope 0.500000 PenaltyCenter 0.000000 surfname white GMProjFrac 0.500000 WMProjAbs 2.000000 lhcostfile (null) rhcostfile (null) interp trilinear (1) frame 0 TolPowell 0.000000 nMaxItersPowell 36 n1dmin 3 Profile 0 Gdiag_no -1 AddNoise 0 (0) SynthSeed 1689579949 TransRandMax 0.000000 RotRandMax 0.000000 Translations 0.000000 0.000000 0.000000 Rotations 0.000000 0.000000 0.000000 Input reg 0.99620 0.04927 0.07188 -1.12659; -0.04504 -0.41502 0.90870 -26.14082; 0.07460 -0.90848 -0.41122 -7.40405; 0.00000 0.00000 0.00000 1.00000; Loading mov ExcludeZeroVoxels 1 Reading in targ vol /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/mri/orig.mgz Projecting LH Surfs Loading lh.white surf Loading lh.thickness for GM GM Proj: 1 0.500000 2.000000 WM Proj: 0 0.500000 2.000000 Projecting RH Surfs Loading rh.white surf Loading rh.thickness for GM Projecting RH Surfs Using lh.cortex.label Using rh.cortex.label Computing relative cost 0 -25.0 -25.0 -25.0 0.968561 1 -25.0 -25.0 25.0 0.978324 2 -25.0 25.0 -25.0 0.978772 3 -25.0 25.0 25.0 0.959206 4 25.0 -25.0 -25.0 1.013145 5 25.0 -25.0 25.0 0.981847 6 25.0 25.0 -25.0 0.988035 7 25.0 25.0 25.0 1.001182 REL: 8 0.113554 7.869073 0.983634 rel = 0.115443 Initial costs ---------------- Number of surface hits 243368 WM Intensity 5364.9903 +/- 1645.2536 Ctx Intensity 6680.6525 +/- 1777.7064 Pct Contrast 22.6217 +/- 17.0375 Cost 0.1136 RelCost 0.1154 ------------------------------------ Brute force preopt -0.1 0.1 0.1, n = 729 0 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 0.1122 0.1122 0.0 3 -0.1000 -0.1000 -0.1000 -0.1000 0.0000 -0.1000 0.1114 0.1114 0.0 4 -0.1000 -0.1000 -0.1000 -0.1000 0.0000 0.0000 0.1114 0.1114 0.0 9 -0.1000 -0.1000 -0.1000 0.0000 -0.1000 -0.1000 0.1085 0.1085 0.0 10 -0.1000 -0.1000 -0.1000 0.0000 -0.1000 0.0000 0.1084 0.1084 0.0 12 -0.1000 -0.1000 -0.1000 0.0000 0.0000 -0.1000 0.1083 0.1083 0.0 18 -0.1000 -0.1000 -0.1000 0.1000 -0.1000 -0.1000 0.1079 0.1079 0.0 39 -0.1000 -0.1000 0.0000 0.0000 0.0000 -0.1000 0.1076 0.1076 0.0 40 -0.1000 -0.1000 0.0000 0.0000 0.0000 0.0000 0.1064 0.1064 0.0 118 -0.1000 0.0000 0.0000 0.0000 -0.1000 0.0000 0.1060 0.1060 0.0 121 -0.1000 0.0000 0.0000 0.0000 0.0000 0.0000 0.1053 0.1053 0.0 361 0.0000 0.0000 0.0000 0.0000 -0.1000 0.0000 0.1053 0.1053 0.0 362 0.0000 0.0000 0.0000 0.0000 -0.1000 0.1000 0.1051 0.1051 0.0 363 0.0000 0.0000 0.0000 0.0000 0.0000 -0.1000 0.1045 0.1045 0.0 364 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.1039 0.1039 0.0 Brute Force -------------------------- Min cost was 0.103933 Number of iterations 729 Search time 1.033848 sec Parameters at best (transmm, rotdeg) 0.000 0.000 0.000 0.000 0.000 0.000 -------------------------------------------- Starting Powell Minimization Init Powel Params dof = 6 0 0 1 0 2 0 3 0 4 0 5 0 fs_powell::minimize nparams 6 maxfev 36 ftol 0.000000 linmin_xtol_ 0.001000 powell nthiter 0: fret = 0.113554 7 -0.036 0.000 0.000 0.000 0.000 0.000 0.1134477215 8 -0.029 0.000 0.000 0.000 0.000 0.000 0.1134422107 17 -0.029 0.092 0.000 0.000 0.000 0.000 0.1126176744 18 -0.029 0.084 0.000 0.000 0.000 0.000 0.1126172587 19 -0.029 0.088 0.000 0.000 0.000 0.000 0.1126151867 28 -0.029 0.088 0.027 0.000 0.000 0.000 0.1125324950 29 -0.029 0.088 0.026 0.000 0.000 0.000 0.1125322677 37 -0.029 0.088 0.026 0.125 0.000 0.000 0.1109734200 46 -0.029 0.088 0.026 0.125 -0.003 0.000 0.1109621871 47 -0.029 0.088 0.026 0.125 -0.018 0.000 0.1109381182 56 -0.029 0.088 0.026 0.125 -0.018 -0.103 0.1101721115 57 -0.029 0.088 0.026 0.125 -0.018 -0.105 0.1101717784 58 -0.029 0.088 0.026 0.125 -0.018 -0.106 0.1101716722 powell nthiter 1: fret = 0.110172 68 -0.052 0.088 0.026 0.125 -0.018 -0.106 0.1099725053 69 -0.077 0.088 0.026 0.125 -0.018 -0.106 0.1099275177 70 -0.071 0.088 0.026 0.125 -0.018 -0.106 0.1099212391 79 -0.071 0.106 0.026 0.125 -0.018 -0.106 0.1099161380 80 -0.071 0.098 0.026 0.125 -0.018 -0.106 0.1099064248 89 -0.071 0.098 0.001 0.125 -0.018 -0.106 0.1098056540 90 -0.071 0.098 -0.004 0.125 -0.018 -0.106 0.1098041504 91 -0.071 0.098 -0.003 0.125 -0.018 -0.106 0.1098040449 99 -0.071 0.098 -0.003 0.136 -0.018 -0.106 0.1097827837 100 -0.071 0.098 -0.003 0.139 -0.018 -0.106 0.1097825956 102 -0.071 0.098 -0.003 0.138 -0.018 -0.106 0.1097824803 103 -0.071 0.098 -0.003 0.137 -0.018 -0.106 0.1097824713 111 -0.071 0.098 -0.003 0.137 -0.017 -0.106 0.1097822424 119 -0.071 0.098 -0.003 0.137 -0.017 -0.115 0.1097611665 120 -0.071 0.098 -0.003 0.137 -0.017 -0.127 0.1097552093 121 -0.071 0.098 -0.003 0.137 -0.017 -0.124 0.1097544374 powell nthiter 2: fret = 0.109754 132 -0.079 0.098 -0.003 0.137 -0.017 -0.124 0.1097526892 133 -0.076 0.098 -0.003 0.137 -0.017 -0.124 0.1097508252 143 -0.076 0.101 -0.003 0.137 -0.017 -0.124 0.1097490118 153 -0.076 0.101 -0.007 0.137 -0.017 -0.124 0.1097471985 155 -0.076 0.101 -0.006 0.137 -0.017 -0.124 0.1097471487 163 -0.076 0.101 -0.006 0.138 -0.017 -0.124 0.1097465793 164 -0.076 0.101 -0.006 0.141 -0.017 -0.124 0.1097461277 184 -0.076 0.101 -0.006 0.141 -0.017 -0.127 0.1097458706 powell nthiter 3: fret = 0.109746 205 -0.076 0.102 -0.006 0.141 -0.017 -0.127 0.1097457647 214 -0.076 0.102 -0.008 0.141 -0.017 -0.127 0.1097455488 powell nthiter 4: fret = 0.109746 Powell done niters = 4 Computing relative cost 0 -25.0 -25.0 -25.0 0.967409 1 -25.0 -25.0 25.0 0.978164 2 -25.0 25.0 -25.0 0.977464 3 -25.0 25.0 25.0 0.960204 4 25.0 -25.0 -25.0 1.011200 5 25.0 -25.0 25.0 0.980773 6 25.0 25.0 -25.0 0.988583 7 25.0 25.0 25.0 1.001297 REL: 8 0.109746 7.865094 0.983137 rel = 0.111628 Number of iterations 4 Min cost was 0.109746 Number of FunctionCalls 301 TolPowell 0.000000 nMaxItersPowell 36 OptimizationTime 18.623851 sec Parameters at optimum (transmm) -0.07554 0.10245 -0.00812 Parameters at optimum (rotdeg) 0.14059 -0.01689 -0.12688 Final costs ---------------- Number of surface hits 243368 WM Intensity 5370.4795 +/- 1646.4226 Ctx Intensity 6690.7228 +/- 1774.9227 Pct Contrast 22.6977 +/- 16.9158 Cost 0.1097 RelCost 0.1154 Reg at min cost was 0.99607 0.04862 0.07402 -1.25777; -0.04743 -0.41290 0.90954 -26.01757; 0.07479 -0.90948 -0.40897 -7.47662; 0.00000 0.00000 0.00000 1.00000; Writing optimal reg to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.dat, type = 14 Original Reg 0.99620 0.04927 0.07188 -1.12659; -0.04504 -0.41502 0.90870 -26.14082; 0.07460 -0.90848 -0.41122 -7.40405; 0.00000 0.00000 0.00000 1.00000; Original Reg - Optimal Reg 0.00012 0.00065 -0.00213 0.13119; 0.00239 -0.00212 -0.00084 -0.12325; -0.00018 0.00100 -0.00225 0.07257; 0.00000 0.00000 0.00000 0.00000; Computing change in lh position LH rmsDiffMean 0.192233 Computing change in rh position Surface-RMS-Diff-mm 0.165764 0.071366 0.368597 mri_segreg done MinCost: 0.109746 5370.479477 6690.722808 22.697713 tkregister2_cmdl --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/lowb.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.dat --noedit --ltaout /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta INFO: no target volume specified, assuming FreeSurfer orig volume. target volume orig movable volume /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/lowb.nii.gz reg file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.dat LoadVol 0 ZeroCRAS 0 7.3.2 Diagnostic Level -1 ---- Input registration matrix -------- 0.99607 0.04862 0.07402 -1.25777; -0.04743 -0.41290 0.90954 -26.01757; 0.07479 -0.90948 -0.40897 -7.47662; 0.00000 0.00000 0.00000 1.00000; float2int = 0 --------------------------------------- INFO: loading target /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/mri/orig.mgz Ttarg: -------------------- -1.00000 0.00000 0.00000 128.00000; 0.00000 0.00000 1.00000 -128.00000; 0.00000 -1.00000 0.00000 128.00000; 0.00000 0.00000 0.00000 1.00000; INFO: loading movable /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/lowb.nii.gz Tmov: -------------------- -1.50000 0.00000 0.00000 105.00000; 0.00000 0.00000 1.50000 -69.00000; 0.00000 -1.50000 0.00000 105.00000; 0.00000 0.00000 0.00000 1.00000; mkheaderreg = 0, float2int = 0 ---- Input registration matrix -------- 0.99607 0.04862 0.07402 -1.25777; -0.04743 -0.41290 0.90954 -26.01757; 0.07479 -0.90948 -0.40897 -7.47662; 0.00000 0.00000 0.00000 1.00000; Determinant 0.999998 subject = sub-BANDA002 RegMat --------------------------- 0.99607 0.04862 0.07402 -1.25777; -0.04743 -0.41290 0.90954 -26.01757; 0.07479 -0.90948 -0.40897 -7.47662; 0.00000 0.00000 0.00000 1.00000; Cleaning up Started at Wed Jul 12 22:46:24 EDT 2023 Ended at Wed Jul 12 22:47:18 EDT 2023 BBR-Run-Time-Sec 54 bbregister Done To check results, run: tkregisterfv --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/lowb.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --surfs --sd /autofs/space/nyx_002/users/edann/test_tutorial/fs lta_convert --inlta /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --invert --outlta /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/anatorig2diff.bbr.lta 7.3.2 --inlta: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta input LTA transform. --invert: will invert transform. --outlta: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/anatorig2diff.bbr.lta output LTA. LTA read, type : 1 1.00000 0.00263 0.00167 0.60831; -0.00259 0.99967 -0.02549 -0.10284; -0.00173 0.02548 0.99967 1.91380; 0.00000 0.00000 0.00000 1.00000; Writing LTA to file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/anatorig2diff.bbr.lta... lta_convert successful. mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/mri/aparc+aseg.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/anatorig/aparc+aseg.nii.gz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/mri/aparc+aseg.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/anatorig/aparc+aseg.nii.gz reading from /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/mri/aparc+aseg.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 1.11759e-08, 0) j_ras = (0, 0, -1) k_ras = (-3.72529e-09, 1, 2.32831e-09) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/anatorig/aparc+aseg.nii.gz... mri_binarize --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/anatorig/aparc+aseg.nii.gz --min .5 --dilate 4 --erode 2 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/anatorig/aparc+aseg_mask.nii.gz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/anatorig/aparc+aseg.nii.gz --min .5 --dilate 4 --erode 2 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/anatorig/aparc+aseg_mask.nii.gz sysname Linux hostname curie.nmr.mgh.harvard.edu machine x86_64 user cy281 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/anatorig/aparc+aseg.nii.gz frame 0 nErode3d 2 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/anatorig/aparc+aseg_mask.nii.gz Binarizing based on threshold min 0.5 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 1127403 values in range Dilating 4 voxels in 3d Eroding 2 voxels in 3d Counting number of voxels in first frame Found 1425075 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/anatorig/aparc+aseg_mask.nii.gz Count: 1425075 1425075.000000 16777216 8.494109 mri_binarize done mri_binarize --i /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/mri/aparc+aseg.mgz --match 2 41 7 46 172 177 77 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/anatorig/White-Matter.nii.gz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --i /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/mri/aparc+aseg.mgz --match 2 41 7 46 172 177 77 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/anatorig/White-Matter.nii.gz sysname Linux hostname curie.nmr.mgh.harvard.edu machine x86_64 user cy281 input /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/anatorig/White-Matter.nii.gz Binarizing based on matching values nMatch 7 0 2 1 41 2 7 3 46 4 172 5 177 6 77 binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 394247 values in range Counting number of voxels in first frame Found 394246 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/anatorig/White-Matter.nii.gz Count: 394246 394246.000000 16777216 2.349889 mri_binarize done mri_binarize --i /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/mri/aparc+aseg.mgz --match 2 41 7 46 172 177 77 28 60 16 173 174 175 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/anatorig/White-Matter++.nii.gz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --i /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/mri/aparc+aseg.mgz --match 2 41 7 46 172 177 77 28 60 16 173 174 175 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/anatorig/White-Matter++.nii.gz sysname Linux hostname curie.nmr.mgh.harvard.edu machine x86_64 user cy281 input /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/anatorig/White-Matter++.nii.gz Binarizing based on matching values nMatch 13 0 2 1 41 2 7 3 46 4 172 5 177 6 77 7 28 8 60 9 16 10 173 11 174 12 175 binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 418651 values in range Counting number of voxels in first frame Found 418650 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/anatorig/White-Matter++.nii.gz Count: 418650 418650.000000 16777216 2.495348 mri_binarize done mri_convert -at /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/anatorig2diff.bbr.lta -rt nearest /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/anatorig/aparc+aseg.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/aparc+aseg.bbr.nii.gz mri_convert -at /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/anatorig2diff.bbr.lta -rt nearest /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/anatorig/aparc+aseg.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/aparc+aseg.bbr.nii.gz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/anatorig/aparc+aseg.nii.gz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 1.11759e-08, 0) j_ras = (0, 0, -1) k_ras = (-3.72529e-09, 1, 2.32831e-09) INFO: Reading transformation from file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/anatorig2diff.bbr.lta... Reading transform with LTAreadEx() INFO: Applying transformation from file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/anatorig2diff.bbr.lta... --------------------------------- INFO: Transform Matrix (linear_ras_to_ras) 0.99999 -0.00259 -0.00173 -0.60525; 0.00263 0.99967 0.02548 0.05244; 0.00167 -0.02549 0.99967 -1.91680; 0.00000 0.00000 0.00000 1.00000; --------------------------------- Applying LTAtransformInterp (resample_type 0) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/aparc+aseg.bbr.nii.gz... mri_convert -at /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/anatorig2diff.bbr.lta -rt nearest /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/anatorig/aparc+aseg_mask.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/aparc+aseg_mask.bbr.nii.gz mri_convert -at /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/anatorig2diff.bbr.lta -rt nearest /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/anatorig/aparc+aseg_mask.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/aparc+aseg_mask.bbr.nii.gz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/anatorig/aparc+aseg_mask.nii.gz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 1.11759e-08, 0) j_ras = (0, 0, -1) k_ras = (-3.72529e-09, 1, 2.32831e-09) INFO: Reading transformation from file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/anatorig2diff.bbr.lta... Reading transform with LTAreadEx() INFO: Applying transformation from file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/anatorig2diff.bbr.lta... --------------------------------- INFO: Transform Matrix (linear_ras_to_ras) 0.99999 -0.00259 -0.00173 -0.60525; 0.00263 0.99967 0.02548 0.05244; 0.00167 -0.02549 0.99967 -1.91680; 0.00000 0.00000 0.00000 1.00000; --------------------------------- Applying LTAtransformInterp (resample_type 0) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/aparc+aseg_mask.bbr.nii.gz... mri_convert -at /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/anatorig2diff.bbr.lta -rt nearest /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/anatorig/White-Matter.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/White-Matter.bbr.nii.gz mri_convert -at /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/anatorig2diff.bbr.lta -rt nearest /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/anatorig/White-Matter.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/White-Matter.bbr.nii.gz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/anatorig/White-Matter.nii.gz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 1.11759e-08, 0) j_ras = (0, 0, -1) k_ras = (-3.72529e-09, 1, 2.32831e-09) INFO: Reading transformation from file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/anatorig2diff.bbr.lta... Reading transform with LTAreadEx() INFO: Applying transformation from file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/anatorig2diff.bbr.lta... --------------------------------- INFO: Transform Matrix (linear_ras_to_ras) 0.99999 -0.00259 -0.00173 -0.60525; 0.00263 0.99967 0.02548 0.05244; 0.00167 -0.02549 0.99967 -1.91680; 0.00000 0.00000 0.00000 1.00000; --------------------------------- Applying LTAtransformInterp (resample_type 0) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/White-Matter.bbr.nii.gz... mri_convert -at /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/anatorig2diff.bbr.lta -rt nearest /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/anatorig/White-Matter++.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/White-Matter++.bbr.nii.gz mri_convert -at /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/anatorig2diff.bbr.lta -rt nearest /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/anatorig/White-Matter++.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/White-Matter++.bbr.nii.gz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/anatorig/White-Matter++.nii.gz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 1.11759e-08, 0) j_ras = (0, 0, -1) k_ras = (-3.72529e-09, 1, 2.32831e-09) INFO: Reading transformation from file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/anatorig2diff.bbr.lta... Reading transform with LTAreadEx() INFO: Applying transformation from file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/anatorig2diff.bbr.lta... --------------------------------- INFO: Transform Matrix (linear_ras_to_ras) 0.99999 -0.00259 -0.00173 -0.60525; 0.00263 0.99967 0.02548 0.05244; 0.00167 -0.02549 0.99967 -1.91680; 0.00000 0.00000 0.00000 1.00000; --------------------------------- Applying LTAtransformInterp (resample_type 0) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/White-Matter++.bbr.nii.gz... mri_convert -at /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/anatorig2diff.bbr.lta -rt nearest /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/anatorig/aparc+aseg+thalnuc.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/aparc+aseg+thalnuc.bbr.nii.gz mri_convert -at /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/anatorig2diff.bbr.lta -rt nearest /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/anatorig/aparc+aseg+thalnuc.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/aparc+aseg+thalnuc.bbr.nii.gz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/anatorig/aparc+aseg+thalnuc.nii.gz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 1.11759e-08, 0) j_ras = (0, 0, -1) k_ras = (-3.72529e-09, 1, 2.32831e-09) INFO: Reading transformation from file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/anatorig2diff.bbr.lta... Reading transform with LTAreadEx() INFO: Applying transformation from file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/anatorig2diff.bbr.lta... --------------------------------- INFO: Transform Matrix (linear_ras_to_ras) 0.99999 -0.00259 -0.00173 -0.60525; 0.00263 0.99967 0.02548 0.05244; 0.00167 -0.02549 0.99967 -1.91680; 0.00000 0.00000 0.00000 1.00000; --------------------------------- Applying LTAtransformInterp (resample_type 0) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/aparc+aseg+thalnuc.bbr.nii.gz... fslstats -t /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi.nii.gz -k /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/White-Matter++.bbr.nii.gz -m -s | awk '{print $1/$2}' > /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dwi_snr.txt mri_convert -at /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta -rt nearest /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lowb_brain_mask.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/anatorig/lowb_brain_mask.bbr.nii.gz mri_convert -at /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta -rt nearest /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lowb_brain_mask.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/anatorig/lowb_brain_mask.bbr.nii.gz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lowb_brain_mask.nii.gz... TR=3230.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) INFO: Reading transformation from file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta... Reading transform with LTAreadEx() INFO: Applying transformation from file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta... --------------------------------- INFO: Transform Matrix (linear_vox_to_vox) 1.49411 0.11218 0.07115 11.70913; 0.11103 -0.61345 -1.36431 205.22891; -0.07294 1.36422 -0.61935 48.61891; 0.00000 0.00000 0.00000 1.00000; --------------------------------- Applying LTAtransformInterp (resample_type 0) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/anatorig/lowb_brain_mask.bbr.nii.gz... #------------------------------------- #@# Tensor fit Wed Jul 12 22:48:35 EDT 2023 dtifit -k /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/data.nii.gz -m /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/aparc+aseg_mask.bbr.nii.gz -r /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/bvecs -b /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/bvals -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit 0 140 0 140 0 92 0 slices processed 1 slices processed 2 slices processed 3 slices processed 4 slices processed 5 slices processed 6 slices processed 7 slices processed 8 slices processed 9 slices processed 10 slices processed 11 slices processed 12 slices processed 13 slices processed 14 slices processed 15 slices processed 16 slices processed 17 slices processed 18 slices processed 19 slices processed 20 slices processed 21 slices processed 22 slices processed 23 slices processed 24 slices processed 25 slices processed 26 slices processed 27 slices processed 28 slices processed 29 slices processed 30 slices processed 31 slices processed 32 slices processed 33 slices processed 34 slices processed 35 slices processed 36 slices processed 37 slices processed 38 slices processed 39 slices processed 40 slices processed 41 slices processed 42 slices processed 43 slices processed 44 slices processed 45 slices processed 46 slices processed 47 slices processed 48 slices processed 49 slices processed 50 slices processed 51 slices processed 52 slices processed 53 slices processed 54 slices processed 55 slices processed 56 slices processed 57 slices processed 58 slices processed 59 slices processed 60 slices processed 61 slices processed 62 slices processed 63 slices processed 64 slices processed 65 slices processed 66 slices processed 67 slices processed 68 slices processed 69 slices processed 70 slices processed 71 slices processed 72 slices processed 73 slices processed 74 slices processed 75 slices processed 76 slices processed 77 slices processed 78 slices processed 79 slices processed 80 slices processed 81 slices processed 82 slices processed 83 slices processed 84 slices processed 85 slices processed 86 slices processed 87 slices processed 88 slices processed 89 slices processed 90 slices processed 91 slices processed #------------------------------------- #@# Inter-subject registration Wed Jul 12 22:49:53 EDT 2023 /usr/pubsw/packages/ANTS/2.3.4/bin/antsRegistrationSyNQuick.sh -d 3 -m /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit_FA.nii.gz -f /usr/local/freesurfer/7.3.2/trctrain/hcp/MGH35_HCP_FA_template.nii.gz -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2syn -------------------------------------------------------------------------------------- Mapping parameters -------------------------------------------------------------------------------------- ANTSPATH is /usr/pubsw/packages/ANTS/2.3.4/bin Dimensionality: 3 Output name prefix: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2syn Fixed images: /usr/local/freesurfer/7.3.2/trctrain/hcp/MGH35_HCP_FA_template.nii.gz Moving images: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit_FA.nii.gz Mask images: Initial transforms: Number of threads: 1 Spline distance: 26 Transform type: s MI histogram bins: 32 Precision: d Use histogram matching 0 ====================================================================================== antsRegistration call: -------------------------------------------------------------------------------------- /usr/pubsw/packages/ANTS/2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2syn,/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2synWarped.nii.gz,/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2synInverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [ /usr/local/freesurfer/7.3.2/trctrain/hcp/MGH35_HCP_FA_template.nii.gz,/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit_FA.nii.gz,1 ] --transform Rigid[ 0.1 ] --metric MI[ /usr/local/freesurfer/7.3.2/trctrain/hcp/MGH35_HCP_FA_template.nii.gz,/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit_FA.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /usr/local/freesurfer/7.3.2/trctrain/hcp/MGH35_HCP_FA_template.nii.gz,/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit_FA.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform SyN[ 0.1,3,0 ] --metric MI[ /usr/local/freesurfer/7.3.2/trctrain/hcp/MGH35_HCP_FA_template.nii.gz,/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit_FA.nii.gz,1,32] --convergence [ 100x70x50x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox -------------------------------------------------------------------------------------- All_Command_lines_OK Using double precision for computations. ============================================================================= The composite transform comprises the following transforms (in order): 1. Center of mass alignment using fixed image: /usr/local/freesurfer/7.3.2/trctrain/hcp/MGH35_HCP_FA_template.nii.gz and moving image: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit_FA.nii.gz (type = Euler3DTransform) ============================================================================= number of levels = 4 number of levels = 4 number of levels = 4 fixed image: /usr/local/freesurfer/7.3.2/trctrain/hcp/MGH35_HCP_FA_template.nii.gz moving image: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit_FA.nii.gz fixed image: /usr/local/freesurfer/7.3.2/trctrain/hcp/MGH35_HCP_FA_template.nii.gz moving image: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit_FA.nii.gz fixed image: /usr/local/freesurfer/7.3.2/trctrain/hcp/MGH35_HCP_FA_template.nii.gz moving image: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit_FA.nii.gz Dimension = 3 Number of stages = 3 Use Histogram Matching false Winsorize image intensities true Lower quantile = 0.005 Upper quantile = 0.995 Stage 1 State Image metric = Mattes Fixed image = Image (0x31a1ab0) RTTI typeinfo: itk::Image Reference Count: 2 Modified Time: 1736 Debug: Off Object Name: Observers: none Source: (none) Source output name: (none) Release Data: Off Data Released: False Global Release Data: Off PipelineMTime: 0 UpdateMTime: 1519 RealTimeStamp: 0 seconds LargestPossibleRegion: Dimension: 3 Index: [0, 0, 0] Size: [122, 146, 122] BufferedRegion: Dimension: 3 Index: [0, 0, 0] Size: [122, 146, 122] RequestedRegion: Dimension: 3 Index: [0, 0, 0] Size: [122, 146, 122] Spacing: [1.5, 1.5, 1.5] Origin: [-90.5, 126.5, -72.5] Direction: 1 0 0 0 -1 0 0 0 1 IndexToPointMatrix: 1.5 0 0 0 -1.5 0 0 0 1.5 PointToIndexMatrix: 0.666667 0 0 0 -0.666667 0 0 0 0.666667 Inverse Direction: 1 0 0 0 -1 0 0 0 1 PixelContainer: ImportImageContainer (0x31870e0) RTTI typeinfo: itk::ImportImageContainer Reference Count: 1 Modified Time: 1516 Debug: Off Object Name: Observers: none Pointer: 0x31ac2f0 Container manages memory: true Size: 2173064 Capacity: 2173064 Moving image = Image (0x3199b10) RTTI typeinfo: itk::Image Reference Count: 2 Modified Time: 1737 Debug: Off Object Name: Observers: none Source: (none) Source output name: (none) Release Data: Off Data Released: False Global Release Data: Off PipelineMTime: 0 UpdateMTime: 1734 RealTimeStamp: 0 seconds LargestPossibleRegion: Dimension: 3 Index: [0, 0, 0] Size: [140, 140, 92] BufferedRegion: Dimension: 3 Index: [0, 0, 0] Size: [140, 140, 92] RequestedRegion: Dimension: 3 Index: [0, 0, 0] Size: [140, 140, 92] Spacing: [1.5, 1.5, 1.5] Origin: [-111.266, 54.1649, -96.3825] Direction: 0.995812 0.0778473 0.0479385 0.0531135 -0.919405 0.38971 -0.0744128 0.385532 0.919689 IndexToPointMatrix: 1.49372 0.116771 0.0719077 0.0796703 -1.37911 0.584565 -0.111619 0.578298 1.37953 PointToIndexMatrix: 0.663875 0.035409 -0.0496085 0.0518982 -0.612936 0.257021 0.031959 0.259807 0.613126 Inverse Direction: 0.995812 0.0531135 -0.0744128 0.0778473 -0.919405 0.385532 0.0479385 0.38971 0.919689 PixelContainer: ImportImageContainer (0x31a6bf0) RTTI typeinfo: itk::ImportImageContainer Reference Count: 1 Modified Time: 1731 Debug: Off Object Name: Observers: none Pointer: 0x4240740 Container manages memory: true Size: 1803200 Capacity: 1803200 Weighting = 1 Sampling strategy = regular Number of bins = 32 Radius = 4 Sampling percentage = 0.25 Transform = Rigid Gradient step = 0.1 Update field sigma (voxel space) = 0 Total field sigma (voxel space) = 0 Update field time sigma = 0 Total field time sigma = 0 Number of time indices = 0 Number of time point samples = 0 Stage 2 State Image metric = Mattes Fixed image = Image (0x31a1020) RTTI typeinfo: itk::Image Reference Count: 2 Modified Time: 2168 Debug: Off Object Name: Observers: none Source: (none) Source output name: (none) Release Data: Off Data Released: False Global Release Data: Off PipelineMTime: 0 UpdateMTime: 1951 RealTimeStamp: 0 seconds LargestPossibleRegion: Dimension: 3 Index: [0, 0, 0] Size: [122, 146, 122] BufferedRegion: Dimension: 3 Index: [0, 0, 0] Size: [122, 146, 122] RequestedRegion: Dimension: 3 Index: [0, 0, 0] Size: [122, 146, 122] Spacing: [1.5, 1.5, 1.5] Origin: [-90.5, 126.5, -72.5] Direction: 1 0 0 0 -1 0 0 0 1 IndexToPointMatrix: 1.5 0 0 0 -1.5 0 0 0 1.5 PointToIndexMatrix: 0.666667 0 0 0 -0.666667 0 0 0 0.666667 Inverse Direction: 1 0 0 0 -1 0 0 0 1 PixelContainer: ImportImageContainer (0x319d720) RTTI typeinfo: itk::ImportImageContainer Reference Count: 1 Modified Time: 1948 Debug: Off Object Name: Observers: none Pointer: 0x5007d20 Container manages memory: true Size: 2173064 Capacity: 2173064 Moving image = Image (0x5006f20) RTTI typeinfo: itk::Image Reference Count: 2 Modified Time: 2169 Debug: Off Object Name: Observers: none Source: (none) Source output name: (none) Release Data: Off Data Released: False Global Release Data: Off PipelineMTime: 0 UpdateMTime: 2166 RealTimeStamp: 0 seconds LargestPossibleRegion: Dimension: 3 Index: [0, 0, 0] Size: [140, 140, 92] BufferedRegion: Dimension: 3 Index: [0, 0, 0] Size: [140, 140, 92] RequestedRegion: Dimension: 3 Index: [0, 0, 0] Size: [140, 140, 92] Spacing: [1.5, 1.5, 1.5] Origin: [-111.266, 54.1649, -96.3825] Direction: 0.995812 0.0778473 0.0479385 0.0531135 -0.919405 0.38971 -0.0744128 0.385532 0.919689 IndexToPointMatrix: 1.49372 0.116771 0.0719077 0.0796703 -1.37911 0.584565 -0.111619 0.578298 1.37953 PointToIndexMatrix: 0.663875 0.035409 -0.0496085 0.0518982 -0.612936 0.257021 0.031959 0.259807 0.613126 Inverse Direction: 0.995812 0.0531135 -0.0744128 0.0778473 -0.919405 0.385532 0.0479385 0.38971 0.919689 PixelContainer: ImportImageContainer (0x5003e40) RTTI typeinfo: itk::ImportImageContainer Reference Count: 1 Modified Time: 2163 Debug: Off Object Name: Observers: none Pointer: 0x609eea0 Container manages memory: true Size: 1803200 Capacity: 1803200 Weighting = 1 Sampling strategy = regular Number of bins = 32 Radius = 4 Sampling percentage = 0.25 Transform = Affine Gradient step = 0.1 Update field sigma (voxel space) = 0 Total field sigma (voxel space) = 0 Update field time sigma = 0 Total field time sigma = 0 Number of time indices = 0 Number of time point samples = 0 Stage 3 State Image metric = Mattes Fixed image = Image (0x5005fb0) RTTI typeinfo: itk::Image Reference Count: 2 Modified Time: 2600 Debug: Off Object Name: Observers: none Source: (none) Source output name: (none) Release Data: Off Data Released: False Global Release Data: Off PipelineMTime: 0 UpdateMTime: 2383 RealTimeStamp: 0 seconds LargestPossibleRegion: Dimension: 3 Index: [0, 0, 0] Size: [122, 146, 122] BufferedRegion: Dimension: 3 Index: [0, 0, 0] Size: [122, 146, 122] RequestedRegion: Dimension: 3 Index: [0, 0, 0] Size: [122, 146, 122] Spacing: [1.5, 1.5, 1.5] Origin: [-90.5, 126.5, -72.5] Direction: 1 0 0 0 -1 0 0 0 1 IndexToPointMatrix: 1.5 0 0 0 -1.5 0 0 0 1.5 PointToIndexMatrix: 0.666667 0 0 0 -0.666667 0 0 0 0.666667 Inverse Direction: 1 0 0 0 -1 0 0 0 1 PixelContainer: ImportImageContainer (0x5005ea0) RTTI typeinfo: itk::ImportImageContainer Reference Count: 1 Modified Time: 2380 Debug: Off Object Name: Observers: none Pointer: 0x6e61be0 Container manages memory: true Size: 2173064 Capacity: 2173064 Moving image = Image (0x609d3b0) RTTI typeinfo: itk::Image Reference Count: 2 Modified Time: 2601 Debug: Off Object Name: Observers: none Source: (none) Source output name: (none) Release Data: Off Data Released: False Global Release Data: Off PipelineMTime: 0 UpdateMTime: 2598 RealTimeStamp: 0 seconds LargestPossibleRegion: Dimension: 3 Index: [0, 0, 0] Size: [140, 140, 92] BufferedRegion: Dimension: 3 Index: [0, 0, 0] Size: [140, 140, 92] RequestedRegion: Dimension: 3 Index: [0, 0, 0] Size: [140, 140, 92] Spacing: [1.5, 1.5, 1.5] Origin: [-111.266, 54.1649, -96.3825] Direction: 0.995812 0.0778473 0.0479385 0.0531135 -0.919405 0.38971 -0.0744128 0.385532 0.919689 IndexToPointMatrix: 1.49372 0.116771 0.0719077 0.0796703 -1.37911 0.584565 -0.111619 0.578298 1.37953 PointToIndexMatrix: 0.663875 0.035409 -0.0496085 0.0518982 -0.612936 0.257021 0.031959 0.259807 0.613126 Inverse Direction: 0.995812 0.0531135 -0.0744128 0.0778473 -0.919405 0.385532 0.0479385 0.38971 0.919689 PixelContainer: ImportImageContainer (0x31abb90) RTTI typeinfo: itk::ImportImageContainer Reference Count: 1 Modified Time: 2595 Debug: Off Object Name: Observers: none Pointer: 0x7efaa50 Container manages memory: true Size: 1803200 Capacity: 1803200 Weighting = 1 Sampling strategy = none Number of bins = 32 Radius = 4 Sampling percentage = 1 Transform = SyN Gradient step = 0.1 Update field sigma (voxel space) = 3 Total field sigma (voxel space) = 0 Update field time sigma = 0 Total field time sigma = 0 Number of time indices = 0 Number of time point samples = 0 Registration using 3 total stages. Stage 0 iterations = 1000x500x250x0 convergence threshold = 1e-06 convergence window size = 10 number of levels = 4 using the Mattes MI metric (number of bins = 32, weight = 1) preprocessing: winsorizing the image intensities Shrink factors (level 1 out of 4): [8, 8, 8] Shrink factors (level 2 out of 4): [4, 4, 4] Shrink factors (level 3 out of 4): [2, 2, 2] Shrink factors (level 4 out of 4): [1, 1, 1] smoothing sigmas per level: [3, 2, 1, 0] regular sampling (percentage = 0.25) *** Running Euler3DTransform registration *** DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST 2DIAGNOSTIC, 1, -7.192153313115e-01, 1.797693134862e+308, 2.5346e-01, 2.5346e-01, 2DIAGNOSTIC, 2, -7.209910141634e-01, 1.797693134862e+308, 2.5504e-01, 1.5819e-03, 2DIAGNOSTIC, 3, -7.237357128087e-01, 1.797693134862e+308, 2.5661e-01, 1.5681e-03, 2DIAGNOSTIC, 4, -7.310379318914e-01, 1.797693134862e+308, 2.5819e-01, 1.5740e-03, 2DIAGNOSTIC, 5, -7.417658707350e-01, 1.797693134862e+308, 2.5977e-01, 1.5821e-03, 2DIAGNOSTIC, 6, -7.531930010072e-01, 1.797693134862e+308, 2.6155e-01, 1.7810e-03, 2DIAGNOSTIC, 7, -7.572577073986e-01, 1.797693134862e+308, 2.6332e-01, 1.7660e-03, 2DIAGNOSTIC, 8, -7.579237615312e-01, 1.797693134862e+308, 2.6510e-01, 1.7881e-03, 2DIAGNOSTIC, 9, -7.577559965573e-01, 1.797693134862e+308, 2.6669e-01, 1.5891e-03, 2DIAGNOSTIC, 10, -7.592759104854e-01, 4.227256258990e-03, 2.6883e-01, 2.1372e-03, 2DIAGNOSTIC, 11, -7.603442536934e-01, 3.385135322462e-03, 2.7067e-01, 1.8420e-03, 2DIAGNOSTIC, 12, -7.611121565004e-01, 2.465894009839e-03, 2.7294e-01, 2.2669e-03, 2DIAGNOSTIC, 13, -7.621677057553e-01, 1.582732302521e-03, 2.7499e-01, 2.0530e-03, 2DIAGNOSTIC, 14, -7.636640288045e-01, 9.205560099201e-04, 2.7710e-01, 2.1069e-03, 2DIAGNOSTIC, 15, -7.697869079784e-01, 6.827124080000e-04, 2.7902e-01, 1.9231e-03, 2DIAGNOSTIC, 16, -7.803640705947e-01, 9.264224143552e-04, 2.8106e-01, 2.0349e-03, 2DIAGNOSTIC, 17, -8.205546004231e-01, 2.026831355741e-03, 2.8356e-01, 2.5032e-03, 2DIAGNOSTIC, 18, -8.368905153554e-01, 3.139945865565e-03, 2.8571e-01, 2.1510e-03, 2DIAGNOSTIC, 19, -8.488563240174e-01, 4.065436007498e-03, 2.8862e-01, 2.9089e-03, 2DIAGNOSTIC, 20, -8.528283537947e-01, 4.620112198023e-03, 2.9049e-01, 1.8690e-03, 2DIAGNOSTIC, 21, -8.650102180376e-01, 4.916082051767e-03, 2.9255e-01, 2.0590e-03, 2DIAGNOSTIC, 22, -8.683732967009e-01, 4.780166694686e-03, 2.9438e-01, 1.8330e-03, 2DIAGNOSTIC, 23, -8.691588333417e-01, 4.239034188942e-03, 2.9643e-01, 2.0452e-03, 2DIAGNOSTIC, 24, -8.690754059980e-01, 3.381969872667e-03, 2.9848e-01, 2.0502e-03, 2DIAGNOSTIC, 25, -8.688813653040e-01, 2.374971206230e-03, 3.0031e-01, 1.8289e-03, 2DIAGNOSTIC, 26, -8.708679482598e-01, 1.390422238818e-03, 3.0213e-01, 1.8210e-03, 2DIAGNOSTIC, 27, -8.731855889998e-01, 9.126259702637e-04, 3.0398e-01, 1.8530e-03, 2DIAGNOSTIC, 28, -8.771084083754e-01, 6.420533234250e-04, 3.0603e-01, 2.0542e-03, 2DIAGNOSTIC, 29, -8.785519762743e-01, 4.961566231923e-04, 3.0832e-01, 2.2881e-03, 2DIAGNOSTIC, 30, -8.802110899439e-01, 3.776155688066e-04, 3.1036e-01, 2.0430e-03, 2DIAGNOSTIC, 31, -8.823748179434e-01, 3.939974737545e-04, 3.1246e-01, 2.0969e-03, 2DIAGNOSTIC, 32, -8.901978243542e-01, 4.937415700221e-04, 3.1456e-01, 2.1019e-03, 2DIAGNOSTIC, 33, -8.929825189962e-01, 5.757983267885e-04, 3.1664e-01, 2.0752e-03, 2DIAGNOSTIC, 34, -8.924013281858e-01, 5.920740688799e-04, 3.1848e-01, 1.8361e-03, 2DIAGNOSTIC, 35, -8.925323158390e-01, 5.523983778664e-04, 3.2051e-01, 2.0320e-03, 2DIAGNOSTIC, 36, -8.927754982043e-01, 4.840273350833e-04, 3.2278e-01, 2.2728e-03, 2DIAGNOSTIC, 37, -8.929399192462e-01, 3.948854503299e-04, 3.2477e-01, 1.9891e-03, 2DIAGNOSTIC, 38, -8.929749018356e-01, 3.088833886070e-04, 3.2830e-01, 3.5350e-03, 2DIAGNOSTIC, 39, -8.923047560305e-01, 2.061960794938e-04, 3.3012e-01, 1.8151e-03, 2DIAGNOSTIC, 40, -8.923839352172e-01, 1.053372716116e-04, 3.3237e-01, 2.2509e-03, 2DIAGNOSTIC, 41, -8.910338528973e-01, 4.853869761793e-06, 3.3460e-01, 2.2299e-03, DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST 2DIAGNOSTIC, 1, -6.826337169765e-01, 1.797693134862e+308, 6.0452e-01, 2.6992e-01, 2DIAGNOSTIC, 2, -6.836259754950e-01, 1.797693134862e+308, 6.1699e-01, 1.2478e-02, 2DIAGNOSTIC, 3, -6.846145449709e-01, 1.797693134862e+308, 6.2907e-01, 1.2072e-02, 2DIAGNOSTIC, 4, -6.854059906492e-01, 1.797693134862e+308, 6.4122e-01, 1.2151e-02, 2DIAGNOSTIC, 5, -6.859174491011e-01, 1.797693134862e+308, 6.5374e-01, 1.2527e-02, 2DIAGNOSTIC, 6, -6.861800574593e-01, 1.797693134862e+308, 6.6616e-01, 1.2414e-02, 2DIAGNOSTIC, 7, -6.872559185697e-01, 1.797693134862e+308, 6.8253e-01, 1.6369e-02, 2DIAGNOSTIC, 8, -6.888454516402e-01, 1.797693134862e+308, 7.0774e-01, 2.5212e-02, 2DIAGNOSTIC, 9, -6.888165912534e-01, 1.797693134862e+308, 7.2082e-01, 1.3077e-02, 2DIAGNOSTIC, 10, -6.887899987713e-01, 6.065745445388e-04, 7.3538e-01, 1.4559e-02, 2DIAGNOSTIC, 11, -6.888010510774e-01, 4.832485584480e-04, 7.4995e-01, 1.4570e-02, 2DIAGNOSTIC, 12, -6.887486565190e-01, 3.686394200415e-04, 7.6293e-01, 1.2988e-02, 2DIAGNOSTIC, 13, -6.887001293754e-01, 2.672704210586e-04, 7.7583e-01, 1.2892e-02, 2DIAGNOSTIC, 14, -6.887166200954e-01, 1.802954057295e-04, 7.8874e-01, 1.2912e-02, 2DIAGNOSTIC, 15, -6.887999103361e-01, 1.059235426142e-04, 8.0178e-01, 1.3039e-02, 2DIAGNOSTIC, 16, -6.888319624034e-01, 3.858179679432e-05, 8.1859e-01, 1.6811e-02, DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST 2DIAGNOSTIC, 1, -5.401580706171e-01, 1.797693134862e+308, 1.2048e+00, 3.8623e-01, 2DIAGNOSTIC, 2, -5.403215838823e-01, 1.797693134862e+308, 1.3156e+00, 1.1074e-01, 2DIAGNOSTIC, 3, -5.404161589879e-01, 1.797693134862e+308, 1.4381e+00, 1.2254e-01, 2DIAGNOSTIC, 4, -5.405339085729e-01, 1.797693134862e+308, 1.5501e+00, 1.1198e-01, 2DIAGNOSTIC, 5, -5.405604489036e-01, 1.797693134862e+308, 1.6778e+00, 1.2769e-01, 2DIAGNOSTIC, 6, -5.405649718578e-01, 1.797693134862e+308, 1.8011e+00, 1.2333e-01, 2DIAGNOSTIC, 7, -5.407915544339e-01, 1.797693134862e+308, 1.9313e+00, 1.3021e-01, 2DIAGNOSTIC, 8, -5.410608471312e-01, 1.797693134862e+308, 2.0602e+00, 1.2888e-01, 2DIAGNOSTIC, 9, -5.411041341380e-01, 1.797693134862e+308, 2.1717e+00, 1.1152e-01, 2DIAGNOSTIC, 10, -5.411268494006e-01, 1.202007670701e-04, 2.3020e+00, 1.3030e-01, 2DIAGNOSTIC, 11, -5.411735335904e-01, 1.053511546100e-04, 2.4314e+00, 1.2942e-01, 2DIAGNOSTIC, 12, -5.412469764570e-01, 9.390379341820e-05, 2.5601e+00, 1.2863e-01, 2DIAGNOSTIC, 13, -5.412539027676e-01, 7.969130222626e-05, 2.7076e+00, 1.4748e-01, 2DIAGNOSTIC, 14, -5.412728531283e-01, 6.572433795178e-05, 2.8376e+00, 1.3000e-01, 2DIAGNOSTIC, 15, -5.412630086886e-01, 4.865932545865e-05, 3.2369e+00, 3.9937e-01, 2DIAGNOSTIC, 16, -5.412630086766e-01, 2.950925665975e-05, 3.6519e+00, 4.1502e-01, 2DIAGNOSTIC, 17, -5.412630086766e-01, 1.683367832397e-05, 3.7827e+00, 1.3073e-01, 2DIAGNOSTIC, 18, -5.412630086766e-01, 1.202163699797e-05, 3.9297e+00, 1.4702e-01, 2DIAGNOSTIC, 19, -5.412630086766e-01, 7.985456874450e-06, 4.0591e+00, 1.2938e-01, 2DIAGNOSTIC, 20, -5.412630086766e-01, 4.357021393224e-06, 4.1850e+00, 1.2590e-01, 2DIAGNOSTIC, 21, -5.412630086766e-01, 1.942682792411e-06, 4.3151e+00, 1.3015e-01, 2DIAGNOSTIC, 22, -5.412630086766e-01, 1.458746866745e-06, 4.4432e+00, 1.2807e-01, 2DIAGNOSTIC, 23, -5.412630086766e-01, 1.158859546831e-06, 4.5655e+00, 1.2227e-01, 2DIAGNOSTIC, 24, -5.412630086766e-01, 1.326035497587e-06, 4.7104e+00, 1.4491e-01, 2DIAGNOSTIC, 25, -5.412630086766e-01, 1.272970423141e-06, 4.8392e+00, 1.2881e-01, 2DIAGNOSTIC, 26, -5.412630086766e-01, 1.223988803548e-06, 4.9740e+00, 1.3484e-01, 2DIAGNOSTIC, 27, -5.412630086766e-01, 1.178636966193e-06, 5.1192e+00, 1.4521e-01, 2DIAGNOSTIC, 28, -5.412630086766e-01, 1.136525849432e-06, 5.2489e+00, 1.2961e-01, 2DIAGNOSTIC, 29, -5.412630086766e-01, 1.097320075964e-06, 5.3867e+00, 1.3780e-01, 2DIAGNOSTIC, 30, -5.412630086766e-01, 1.060729002432e-06, 5.5449e+00, 1.5823e-01, 2DIAGNOSTIC, 31, -5.412630086766e-01, 1.026499501323e-06, 5.6849e+00, 1.4003e-01, DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST 2DIAGNOSTIC, 1, -4.848077033450e-01, 1.797693134862e+308, 6.6185e+00, 9.3353e-01, Elapsed time (stage 0): 6.7446e+00 Stage 1 iterations = 1000x500x250x0 convergence threshold = 1.0000e-06 convergence window size = 10 number of levels = 4 using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) preprocessing: winsorizing the image intensities Shrink factors (level 1 out of 4): [8, 8, 8] Shrink factors (level 2 out of 4): [4, 4, 4] Shrink factors (level 3 out of 4): [2, 2, 2] Shrink factors (level 4 out of 4): [1, 1, 1] smoothing sigmas per level: [3, 2, 1, 0] regular sampling (percentage = 2.5000e-01) *** Running AffineTransform registration *** DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST 2DIAGNOSTIC, 1, -8.918922420072e-01, 1.797693134862e+308, 2.6921e-01, 2.6921e-01, 2DIAGNOSTIC, 2, -8.931259799916e-01, 1.797693134862e+308, 2.7122e-01, 2.0120e-03, 2DIAGNOSTIC, 3, -8.957663805181e-01, 1.797693134862e+308, 2.7298e-01, 1.7631e-03, 2DIAGNOSTIC, 4, -8.981019734418e-01, 1.797693134862e+308, 2.7475e-01, 1.7631e-03, 2DIAGNOSTIC, 5, -8.999334466384e-01, 1.797693134862e+308, 2.7652e-01, 1.7700e-03, 2DIAGNOSTIC, 6, -9.031163637571e-01, 1.797693134862e+308, 2.7998e-01, 3.4618e-03, 2DIAGNOSTIC, 7, -9.080535611011e-01, 1.797693134862e+308, 2.8179e-01, 1.8151e-03, 2DIAGNOSTIC, 8, -9.141279236348e-01, 1.797693134862e+308, 2.8357e-01, 1.7779e-03, 2DIAGNOSTIC, 9, -9.181867472067e-01, 1.797693134862e+308, 2.8654e-01, 2.9662e-03, 2DIAGNOSTIC, 10, -9.215521476007e-01, 2.190939687231e-03, 2.8860e-01, 2.0649e-03, 2DIAGNOSTIC, 11, -9.248298466446e-01, 2.163245673927e-03, 2.9066e-01, 2.0609e-03, 2DIAGNOSTIC, 12, -9.321631712598e-01, 2.165724882955e-03, 2.9318e-01, 2.5110e-03, 2DIAGNOSTIC, 13, -9.343188974555e-01, 2.081841768099e-03, 2.9545e-01, 2.2790e-03, 2DIAGNOSTIC, 14, -9.364059891685e-01, 1.920790030645e-03, 2.9795e-01, 2.4920e-03, 2DIAGNOSTIC, 15, -9.380977769130e-01, 1.681170408418e-03, 2.9997e-01, 2.0199e-03, 2DIAGNOSTIC, 16, -9.377456349186e-01, 1.371822900668e-03, 3.0200e-01, 2.0299e-03, 2DIAGNOSTIC, 17, -9.381944156764e-01, 1.069228752726e-03, 3.0424e-01, 2.2440e-03, 2DIAGNOSTIC, 18, -9.401020853095e-01, 8.382784217678e-04, 3.0743e-01, 3.1922e-03, 2DIAGNOSTIC, 19, -9.409012874937e-01, 6.331138554279e-04, 3.0946e-01, 2.0280e-03, 2DIAGNOSTIC, 20, -9.411845592099e-01, 4.466779121606e-04, 3.1142e-01, 1.9641e-03, 2DIAGNOSTIC, 21, -9.415433313288e-01, 2.886138415267e-04, 3.1363e-01, 2.2089e-03, 2DIAGNOSTIC, 22, -9.411377729833e-01, 2.152541161062e-04, 3.1560e-01, 1.9641e-03, 2DIAGNOSTIC, 23, -9.408813263676e-01, 1.530165328425e-04, 3.1783e-01, 2.2371e-03, 2DIAGNOSTIC, 24, -9.412268113193e-01, 1.122858710964e-04, 3.1987e-01, 2.0349e-03, 2DIAGNOSTIC, 25, -9.401305371782e-01, 7.200989450658e-05, 3.2189e-01, 2.0170e-03, 2DIAGNOSTIC, 26, -9.398727363617e-01, 2.160687206318e-05, 3.2416e-01, 2.2709e-03, DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST 2DIAGNOSTIC, 1, -6.997187007623e-01, 1.797693134862e+308, 5.9499e-01, 2.7083e-01, 2DIAGNOSTIC, 2, -7.003534071583e-01, 1.797693134862e+308, 6.1039e-01, 1.5408e-02, 2DIAGNOSTIC, 3, -7.008934590722e-01, 1.797693134862e+308, 6.2586e-01, 1.5467e-02, 2DIAGNOSTIC, 4, -7.011695043368e-01, 1.797693134862e+308, 6.4210e-01, 1.6239e-02, 2DIAGNOSTIC, 5, -7.016095894606e-01, 1.797693134862e+308, 6.5906e-01, 1.6962e-02, 2DIAGNOSTIC, 6, -7.018783672698e-01, 1.797693134862e+308, 6.7303e-01, 1.3967e-02, 2DIAGNOSTIC, 7, -7.028040383497e-01, 1.797693134862e+308, 6.8745e-01, 1.4424e-02, 2DIAGNOSTIC, 8, -7.041280548609e-01, 1.797693134862e+308, 7.0305e-01, 1.5596e-02, 2DIAGNOSTIC, 9, -7.044097974483e-01, 1.797693134862e+308, 7.1738e-01, 1.4330e-02, 2DIAGNOSTIC, 10, -7.062667254186e-01, 5.361417477126e-04, 7.3392e-01, 1.6539e-02, 2DIAGNOSTIC, 11, -7.065991583667e-01, 5.376243958332e-04, 7.4819e-01, 1.4270e-02, 2DIAGNOSTIC, 12, -7.072468161576e-01, 5.337866112592e-04, 7.6306e-01, 1.4876e-02, 2DIAGNOSTIC, 13, -7.077889053604e-01, 5.159203182975e-04, 7.8261e-01, 1.9547e-02, 2DIAGNOSTIC, 14, -7.079643847814e-01, 4.666373886915e-04, 8.0026e-01, 1.7653e-02, 2DIAGNOSTIC, 15, -7.082416136996e-01, 4.009733966410e-04, 8.1610e-01, 1.5838e-02, 2DIAGNOSTIC, 16, -7.087532696638e-01, 3.262152339626e-04, 8.3218e-01, 1.6076e-02, 2DIAGNOSTIC, 17, -7.088541204472e-01, 2.541813840807e-04, 8.4628e-01, 1.4106e-02, 2DIAGNOSTIC, 18, -7.090220515415e-01, 2.006571557057e-04, 8.6271e-01, 1.6430e-02, 2DIAGNOSTIC, 19, -7.090945461310e-01, 1.410407420431e-04, 8.7859e-01, 1.5871e-02, 2DIAGNOSTIC, 20, -7.091392370749e-01, 1.128153147599e-04, 8.9612e-01, 1.7531e-02, 2DIAGNOSTIC, 21, -7.091493035178e-01, 8.318031951547e-05, 9.1017e-01, 1.4050e-02, 2DIAGNOSTIC, 22, -7.092243225456e-01, 6.164550807640e-05, 9.2476e-01, 1.4596e-02, 2DIAGNOSTIC, 23, -7.093073095607e-01, 4.733798329722e-05, 9.3867e-01, 1.3907e-02, 2DIAGNOSTIC, 24, -7.094803477635e-01, 3.570976715753e-05, 9.5288e-01, 1.4210e-02, 2DIAGNOSTIC, 25, -7.096456449991e-01, 2.867949501330e-05, 9.6889e-01, 1.6013e-02, 2DIAGNOSTIC, 26, -7.096645958202e-01, 2.780387758696e-05, 9.8716e-01, 1.8267e-02, 2DIAGNOSTIC, 27, -7.097154828617e-01, 2.674347876033e-05, 1.0211e+00, 3.3911e-02, 2DIAGNOSTIC, 28, -7.097809652161e-01, 2.666988108985e-05, 1.0352e+00, 1.4097e-02, 2DIAGNOSTIC, 29, -7.097160681822e-01, 2.423052555787e-05, 1.0497e+00, 1.4573e-02, 2DIAGNOSTIC, 30, -7.097187841828e-01, 2.042929099812e-05, 1.0637e+00, 1.3955e-02, 2DIAGNOSTIC, 31, -7.096563172136e-01, 1.437159019648e-05, 1.0781e+00, 1.4410e-02, 2DIAGNOSTIC, 32, -7.096618317657e-01, 8.466744786974e-06, 1.0921e+00, 1.3947e-02, 2DIAGNOSTIC, 33, -7.096684030683e-01, 3.248025188897e-06, 1.1063e+00, 1.4226e-02, DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST 2DIAGNOSTIC, 1, -5.739235614349e-01, 1.797693134862e+308, 1.5091e+00, 4.0283e-01, 2DIAGNOSTIC, 2, -5.743765974766e-01, 1.797693134862e+308, 1.6282e+00, 1.1912e-01, 2DIAGNOSTIC, 3, -5.749477156391e-01, 1.797693134862e+308, 1.7522e+00, 1.2397e-01, 2DIAGNOSTIC, 4, -5.755848754845e-01, 1.797693134862e+308, 1.8746e+00, 1.2237e-01, 2DIAGNOSTIC, 5, -5.764444546314e-01, 1.797693134862e+308, 1.9931e+00, 1.1853e-01, 2DIAGNOSTIC, 6, -5.780396941265e-01, 1.797693134862e+308, 2.1162e+00, 1.2311e-01, 2DIAGNOSTIC, 7, -5.788818777807e-01, 1.797693134862e+308, 2.2587e+00, 1.4251e-01, 2DIAGNOSTIC, 8, -5.803197455806e-01, 1.797693134862e+308, 2.4143e+00, 1.5563e-01, 2DIAGNOSTIC, 9, -5.817527004649e-01, 1.797693134862e+308, 2.6183e+00, 2.0392e-01, 2DIAGNOSTIC, 10, -5.817435983624e-01, 9.793344530382e-04, 2.7765e+00, 1.5819e-01, 2DIAGNOSTIC, 11, -5.817409577643e-01, 8.781868660354e-04, 2.9219e+00, 1.4545e-01, 2DIAGNOSTIC, 12, -5.817317044594e-01, 7.338596972397e-04, 3.0470e+00, 1.2507e-01, 2DIAGNOSTIC, 13, -5.817362559110e-01, 5.670691633466e-04, 3.1835e+00, 1.3649e-01, 2DIAGNOSTIC, 14, -5.817343492493e-01, 3.944923451893e-04, 3.3611e+00, 1.7765e-01, 2DIAGNOSTIC, 15, -5.817236132441e-01, 2.364503440769e-04, 3.5173e+00, 1.5618e-01, 2DIAGNOSTIC, 16, -5.817242405029e-01, 1.262394203397e-04, 3.6553e+00, 1.3804e-01, 2DIAGNOSTIC, 17, -5.817187307097e-01, 4.106304471101e-05, 3.7770e+00, 1.2171e-01, DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST 2DIAGNOSTIC, 1, -5.136988019214e-01, 1.797693134862e+308, 4.8314e+00, 1.0544e+00, Elapsed time (stage 1): 4.9694e+00 Stage 2 iterations = 100x70x50x0 convergence threshold = 1.0000e-06 convergence window size = 10 number of levels = 4 using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) preprocessing: winsorizing the image intensities Shrink factors (level 1 out of 4): [8, 8, 8] Shrink factors (level 2 out of 4): [4, 4, 4] Shrink factors (level 3 out of 4): [2, 2, 2] Shrink factors (level 4 out of 4): [1, 1, 1] smoothing sigmas per level: [3, 2, 1, 0] Using default NONE metricSamplingStrategy *** Running SyN registration (varianceForUpdateField = 3.0000e+00, varianceForTotalField = 0.0000e+00) *** XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST 1DIAGNOSTIC, 1, -6.823498206255e-01, 1.797693134862e+308, 2.8438e-01, 2.8438e-01, 1DIAGNOSTIC, 2, -6.957513673390e-01, 1.797693134862e+308, 3.1388e-01, 2.9498e-02, 1DIAGNOSTIC, 3, -7.031458928148e-01, 1.797693134862e+308, 3.4335e-01, 2.9471e-02, 1DIAGNOSTIC, 4, -7.077563195238e-01, 1.797693134862e+308, 3.7327e-01, 2.9914e-02, 1DIAGNOSTIC, 5, -7.073980551422e-01, 1.797693134862e+308, 4.0386e-01, 3.0587e-02, 1DIAGNOSTIC, 6, -7.060437326511e-01, 1.797693134862e+308, 4.3320e-01, 2.9347e-02, 1DIAGNOSTIC, 7, -7.023103388896e-01, 1.797693134862e+308, 4.6280e-01, 2.9598e-02, 1DIAGNOSTIC, 8, -6.976117841285e-01, 1.797693134862e+308, 4.9242e-01, 2.9619e-02, 1DIAGNOSTIC, 9, -6.955221466120e-01, 1.797693134862e+308, 5.2407e-01, 3.1647e-02, 1DIAGNOSTIC, 10, -6.932222646249e-01, 1.666309870314e-04, 5.5451e-01, 3.0448e-02, 1DIAGNOSTIC, 11, -6.892675728986e-01, -1.067587231553e-03, 5.8455e-01, 3.0033e-02, XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST 1DIAGNOSTIC, 1, -5.563429229265e-01, 1.797693134862e+308, 9.8975e-01, 4.0520e-01, 1DIAGNOSTIC, 2, -5.634018036799e-01, 1.797693134862e+308, 1.1479e+00, 1.5814e-01, 1DIAGNOSTIC, 3, -5.677498507799e-01, 1.797693134862e+308, 1.3039e+00, 1.5602e-01, 1DIAGNOSTIC, 4, -5.712214456025e-01, 1.797693134862e+308, 1.4650e+00, 1.6109e-01, 1DIAGNOSTIC, 5, -5.741699435834e-01, 1.797693134862e+308, 1.6386e+00, 1.7357e-01, 1DIAGNOSTIC, 6, -5.762112450975e-01, 1.797693134862e+308, 1.7958e+00, 1.5728e-01, 1DIAGNOSTIC, 7, -5.774600666703e-01, 1.797693134862e+308, 1.9546e+00, 1.5871e-01, 1DIAGNOSTIC, 8, -5.784126221687e-01, 1.797693134862e+308, 2.1164e+00, 1.6180e-01, 1DIAGNOSTIC, 9, -5.787331883079e-01, 1.797693134862e+308, 2.2749e+00, 1.5851e-01, 1DIAGNOSTIC, 10, -5.794923949027e-01, 2.351045201125e-03, 2.4347e+00, 1.5986e-01, 1DIAGNOSTIC, 11, -5.799940802782e-01, 1.550013006805e-03, 2.5974e+00, 1.6266e-01, 1DIAGNOSTIC, 12, -5.805455861076e-01, 1.056779960893e-03, 2.7574e+00, 1.5997e-01, 1DIAGNOSTIC, 13, -5.808216467125e-01, 7.193185123301e-04, 2.9164e+00, 1.5907e-01, 1DIAGNOSTIC, 14, -5.810425411999e-01, 4.943801408471e-04, 3.0836e+00, 1.6716e-01, 1DIAGNOSTIC, 15, -5.812392694120e-01, 3.572177313674e-04, 3.2440e+00, 1.6040e-01, 1DIAGNOSTIC, 16, -5.809281971630e-01, 2.572896339679e-04, 3.4079e+00, 1.6388e-01, 1DIAGNOSTIC, 17, -5.801444499422e-01, 1.590058696994e-04, 3.5742e+00, 1.6631e-01, 1DIAGNOSTIC, 18, -5.795086069393e-01, 6.651449377186e-05, 3.7384e+00, 1.6423e-01, 1DIAGNOSTIC, 19, -5.790840832892e-01, -2.510282269404e-05, 3.9017e+00, 1.6329e-01, XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST 1DIAGNOSTIC, 1, -4.611668019150e-01, 1.797693134862e+308, 5.3198e+00, 1.4181e+00, 1DIAGNOSTIC, 2, -4.636181329511e-01, 1.797693134862e+308, 6.3539e+00, 1.0342e+00, 1DIAGNOSTIC, 3, -4.657071574697e-01, 1.797693134862e+308, 7.3833e+00, 1.0294e+00, 1DIAGNOSTIC, 4, -4.673145839905e-01, 1.797693134862e+308, 8.4134e+00, 1.0301e+00, 1DIAGNOSTIC, 5, -4.686624691263e-01, 1.797693134862e+308, 9.4373e+00, 1.0239e+00, 1DIAGNOSTIC, 6, -4.697235449745e-01, 1.797693134862e+308, 1.0475e+01, 1.0381e+00, 1DIAGNOSTIC, 7, -4.705787461737e-01, 1.797693134862e+308, 1.1482e+01, 1.0062e+00, 1DIAGNOSTIC, 8, -4.713869046353e-01, 1.797693134862e+308, 1.2493e+01, 1.0113e+00, 1DIAGNOSTIC, 9, -4.720155462141e-01, 1.797693134862e+308, 1.3489e+01, 9.9577e-01, 1DIAGNOSTIC, 10, -4.725035289206e-01, 1.481671344764e-03, 1.4484e+01, 9.9576e-01, 1DIAGNOSTIC, 11, -4.730773237342e-01, 1.111476112333e-03, 1.5513e+01, 1.0287e+00, 1DIAGNOSTIC, 12, -4.734036407873e-01, 8.423514500624e-04, 1.6516e+01, 1.0029e+00, 1DIAGNOSTIC, 13, -4.736682415080e-01, 6.475832657881e-04, 1.7568e+01, 1.0520e+00, 1DIAGNOSTIC, 14, -4.738534206183e-01, 4.988321258054e-04, 1.8625e+01, 1.0567e+00, 1DIAGNOSTIC, 15, -4.739075481881e-01, 3.806188430192e-04, 1.9685e+01, 1.0600e+00, 1DIAGNOSTIC, 16, -4.738836548827e-01, 2.813196961823e-04, 2.0746e+01, 1.0610e+00, 1DIAGNOSTIC, 17, -4.739466667607e-01, 2.002857252318e-04, 2.1831e+01, 1.0847e+00, 1DIAGNOSTIC, 18, -4.739108531480e-01, 1.355580129889e-04, 2.2891e+01, 1.0606e+00, 1DIAGNOSTIC, 19, -4.740159411686e-01, 8.845526986896e-05, 2.3949e+01, 1.0575e+00, 1DIAGNOSTIC, 20, -4.740061637178e-01, 5.209375075639e-05, 2.5013e+01, 1.0641e+00, 1DIAGNOSTIC, 21, -4.739787286331e-01, 3.014389150024e-05, 2.6073e+01, 1.0600e+00, 1DIAGNOSTIC, 22, -4.738724318138e-01, 1.348036103817e-05, 2.7126e+01, 1.0531e+00, 1DIAGNOSTIC, 23, -4.738135571382e-01, 2.475176705347e-06, 2.8187e+01, 1.0605e+00, 1DIAGNOSTIC, 24, -4.736001214381e-01, -8.481403601567e-06, 2.9242e+01, 1.0550e+00, Elapsed time (stage 2): 30.46 Total elapsed time: 42.19 /usr/pubsw/packages/ANTS/2.3.4/bin/ConvertTransformFile 3 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2syn0GenericAffine.mat /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2syn0GenericAffine.txt --hm --ras lta_convert --inniftyreg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2syn0GenericAffine.txt --outlta /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2syn.lta --src /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit_FA.nii.gz --trg /usr/local/freesurfer/7.3.2/trctrain/hcp/MGH35_HCP_FA_template.nii.gz 7.3.2 --inniftyreg: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2syn0GenericAffine.txt input NiftyReg transform. --outlta: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2syn.lta output LTA. --src: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit_FA.nii.gz src image (geometry). --trg: /usr/local/freesurfer/7.3.2/trctrain/hcp/MGH35_HCP_FA_template.nii.gz trg image (geometry). LTA read, type : 1 0.93094 0.04057 0.07673 7.04417; -0.06038 0.91816 0.23589 -24.49786; -0.07210 -0.21842 0.96801 17.07935; 0.00000 0.00000 0.00000 1.00000; Writing LTA to file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2syn.lta... lta_convert successful. mri_warp_convert --initk /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2syn1Warp.nii.gz --outm3z /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/syn_warp.m3z --insrcgeom /usr/local/freesurfer/7.3.2/trctrain/hcp/MGH35_HCP_FA_template.nii.gz 7.3.2 --inlps: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2syn1Warp.nii.gz input LPS warp. --outm3z: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/syn_warp.m3z output M3Z. --insrcgeom: /usr/local/freesurfer/7.3.2/trctrain/hcp/MGH35_HCP_FA_template.nii.gz source image (geometry). INFO: using NIfTI-1 qform niiRead(): detected input as 64 bit double, reading in as 32 bit float GCAMwrite mri_warp_convert successful. lta_convert --inlta /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2syn.lta --invert --outlta /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/syn2diff.lta 7.3.2 --inlta: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2syn.lta input LTA transform. --invert: will invert transform. --outlta: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/syn2diff.lta output LTA. LTA read, type : 1 0.93094 0.04057 0.07673 7.04417; -0.06038 0.91816 0.23589 -24.49786; -0.07210 -0.21842 0.96801 17.07935; 0.00000 0.00000 0.00000 1.00000; Writing LTA to file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/syn2diff.lta... lta_convert successful. mri_concatenate_lta /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/anatorig2diff.bbr.lta /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2syn.lta /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/anatorig2syn.bbr.lta volume geometry: extent : (140, 140, 92) voxel : ( 1.5000, 1.5000, 1.5000) x_(ras) : (-0.9958, -0.0531, -0.0744) y_(ras) : (-0.0778, 0.9194, 0.3855) z_(ras) : (-0.0479, -0.3897, 0.9197) c_(ras) : (-4.7764, 9.9057, -0.2565) file : /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/lowb.nii.gz volume geometry: extent : (140, 140, 92) voxel : ( 1.5000, 1.5000, 1.5000) x_(ras) : (-0.9958, -0.0531, -0.0744) y_(ras) : (-0.0778, 0.9194, 0.3855) z_(ras) : (-0.0479, -0.3897, 0.9197) c_(ras) : (-4.7764, 9.9057, -0.2565) file : /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit_FA.nii.gz Read individual LTAs Warning: dst volume of lta1 doesn't match src volume of lta2 Volume geometry for lta1-dst: Volume geometry for lta2-src: Combining the two LTAs to get a RAS-to-RAS from src of LTA1 to dst of LTA2... Writing combined LTA to file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/anatorig2syn.bbr.lta... mri_concatenate_lta successful. lta_convert --inlta /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/anatorig2syn.bbr.lta --invert --outlta /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/syn2anatorig.bbr.lta 7.3.2 --inlta: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/anatorig2syn.bbr.lta input LTA transform. --invert: will invert transform. --outlta: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/syn2anatorig.bbr.lta output LTA. LTA read, type : 1 0.93117 0.03620 0.07613 6.33576; -0.05758 0.91200 0.25931 -24.86532; -0.07107 -0.24283 0.96225 15.25604; 0.00000 0.00000 0.00000 1.00000; Writing LTA to file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/syn2anatorig.bbr.lta... lta_convert successful. lta_convert --infsl /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/identity.mat --outlta /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/syn2syn.lta --src /usr/local/freesurfer/7.3.2/trctrain/hcp/MGH35_HCP_FA_template.nii.gz --trg /usr/local/freesurfer/7.3.2/trctrain/hcp/MGH35_HCP_FA_template.nii.gz 7.3.2 --infsl: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/identity.mat input FSL transform. --outlta: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/syn2syn.lta output LTA. --src: /usr/local/freesurfer/7.3.2/trctrain/hcp/MGH35_HCP_FA_template.nii.gz src image (geometry). --trg: /usr/local/freesurfer/7.3.2/trctrain/hcp/MGH35_HCP_FA_template.nii.gz trg image (geometry). FSLOUTPUTTYPE NIFTI_GZ fsl2TkReg: mov det = -3.375, ref det = -3.375 LTA read, type : 1 1.00000 0.00000 0.00000 0.00000; 0.00000 1.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; Writing LTA to file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/syn2syn.lta... lta_convert successful. mri_vol2vol --gcam /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/anatorig/aparc+aseg.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/anatorig2syn.bbr.lta /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/syn_warp.m3z /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/syn2syn.lta 0 0 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/aparc+aseg.nii.gz Loading mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/anatorig/aparc+aseg.nii.gz Loading source LTA /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/anatorig2syn.bbr.lta Loading GCAM /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/syn_warp.m3z setting orig areas to linear transform determinant scaled 1.00 Loading destination LTA /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/syn2syn.lta MRIvol2volGCAM(): VSM not used MRIvol2volGCAM(): interpolation type is 0 nearest MRIvol2volGCAM(): Inverting Source LTA WARN: MRIvol2volGCAM(): neither src nor dst VG of Dest LTA is conformed MRIvol2volGCAM(): Chaning Destination LTA type to vox2vox MRIvol2volGCAM: t=0.4239 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/aparc+aseg.nii.gz mri_vol2vol gcam done #VMPC# mri_vol2vol VmPeak 770776 mri_vol2vol --gcam /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/anatorig/aparc+aseg_mask.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/anatorig2syn.bbr.lta /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/syn_warp.m3z /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/syn2syn.lta 0 0 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/aparc+aseg_mask.nii.gz Loading mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/anatorig/aparc+aseg_mask.nii.gz Loading source LTA /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/anatorig2syn.bbr.lta Loading GCAM /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/syn_warp.m3z setting orig areas to linear transform determinant scaled 1.00 Loading destination LTA /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/syn2syn.lta MRIvol2volGCAM(): VSM not used MRIvol2volGCAM(): interpolation type is 0 nearest MRIvol2volGCAM(): Inverting Source LTA WARN: MRIvol2volGCAM(): neither src nor dst VG of Dest LTA is conformed MRIvol2volGCAM(): Chaning Destination LTA type to vox2vox MRIvol2volGCAM: t=0.4170 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/aparc+aseg_mask.nii.gz mri_vol2vol gcam done #VMPC# mri_vol2vol VmPeak 770776 mri_vol2vol --gcam /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/anatorig/White-Matter.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/anatorig2syn.bbr.lta /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/syn_warp.m3z /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/syn2syn.lta 0 0 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/White-Matter.nii.gz Loading mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/anatorig/White-Matter.nii.gz Loading source LTA /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/anatorig2syn.bbr.lta Loading GCAM /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/syn_warp.m3z setting orig areas to linear transform determinant scaled 1.00 Loading destination LTA /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/syn2syn.lta MRIvol2volGCAM(): VSM not used MRIvol2volGCAM(): interpolation type is 0 nearest MRIvol2volGCAM(): Inverting Source LTA WARN: MRIvol2volGCAM(): neither src nor dst VG of Dest LTA is conformed MRIvol2volGCAM(): Chaning Destination LTA type to vox2vox MRIvol2volGCAM: t=0.4227 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/White-Matter.nii.gz mri_vol2vol gcam done #VMPC# mri_vol2vol VmPeak 770776 mri_vol2vol --gcam /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/anatorig/White-Matter++.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/anatorig2syn.bbr.lta /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/syn_warp.m3z /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/syn2syn.lta 0 0 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/White-Matter++.nii.gz Loading mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/anatorig/White-Matter++.nii.gz Loading source LTA /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/anatorig2syn.bbr.lta Loading GCAM /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/syn_warp.m3z setting orig areas to linear transform determinant scaled 1.00 Loading destination LTA /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/syn2syn.lta MRIvol2volGCAM(): VSM not used MRIvol2volGCAM(): interpolation type is 0 nearest MRIvol2volGCAM(): Inverting Source LTA WARN: MRIvol2volGCAM(): neither src nor dst VG of Dest LTA is conformed MRIvol2volGCAM(): Chaning Destination LTA type to vox2vox MRIvol2volGCAM: t=0.4239 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/White-Matter++.nii.gz mri_vol2vol gcam done #VMPC# mri_vol2vol VmPeak 770776 mri_vol2vol --gcam /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/anatorig/aparc+aseg+thalnuc.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/anatorig2syn.bbr.lta /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/syn_warp.m3z /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/syn2syn.lta 0 0 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/aparc+aseg+thalnuc.nii.gz Loading mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/anatorig/aparc+aseg+thalnuc.nii.gz Loading source LTA /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/anatorig2syn.bbr.lta Loading GCAM /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/syn_warp.m3z setting orig areas to linear transform determinant scaled 1.00 Loading destination LTA /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/syn2syn.lta MRIvol2volGCAM(): VSM not used MRIvol2volGCAM(): interpolation type is 0 nearest MRIvol2volGCAM(): Inverting Source LTA WARN: MRIvol2volGCAM(): neither src nor dst VG of Dest LTA is conformed MRIvol2volGCAM(): Chaning Destination LTA type to vox2vox MRIvol2volGCAM: t=0.4237 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/aparc+aseg+thalnuc.nii.gz mri_vol2vol gcam done #VMPC# mri_vol2vol VmPeak 770776 mri_vol2vol --gcam /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lowb_brain_mask.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2syn.lta /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/syn_warp.m3z /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/syn2syn.lta 0 0 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lowb_brain_mask.nii.gz Loading mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lowb_brain_mask.nii.gz Loading source LTA /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2syn.lta Loading GCAM /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/syn_warp.m3z setting orig areas to linear transform determinant scaled 1.00 Loading destination LTA /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/syn2syn.lta MRIvol2volGCAM(): VSM not used MRIvol2volGCAM(): interpolation type is 0 nearest MRIvol2volGCAM(): Chaning Source LTA type to vox2vox MRIvol2volGCAM(): Inverting Source LTA WARN: MRIvol2volGCAM(): neither src nor dst VG of Dest LTA is conformed MRIvol2volGCAM(): Chaning Destination LTA type to vox2vox MRIvol2volGCAM: t=0.3168 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lowb_brain_mask.nii.gz mri_vol2vol gcam done #VMPC# mri_vol2vol VmPeak 708344 #------------------------------------- #@# Priors Wed Jul 12 22:51:11 EDT 2023 /usr/local/freesurfer/7.3.2/bin/dmri_train --outdir /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn --out acomm_avg16_syn_bbr cc.bodyc_avg16_syn_bbr cc.bodyp_avg16_syn_bbr cc.bodypf_avg16_syn_bbr cc.bodypm_avg16_syn_bbr cc.bodyt_avg16_syn_bbr cc.genu_avg16_syn_bbr cc.rostrum_avg16_syn_bbr cc.splenium_avg16_syn_bbr mcp_avg16_syn_bbr lh.af_avg16_syn_bbr rh.af_avg16_syn_bbr lh.ar_avg16_syn_bbr rh.ar_avg16_syn_bbr lh.atr_avg16_syn_bbr rh.atr_avg16_syn_bbr lh.cbd_avg16_syn_bbr rh.cbd_avg16_syn_bbr lh.cbv_avg16_syn_bbr rh.cbv_avg16_syn_bbr lh.cst_avg16_syn_bbr rh.cst_avg16_syn_bbr lh.emc_avg16_syn_bbr rh.emc_avg16_syn_bbr lh.fat_avg16_syn_bbr rh.fat_avg16_syn_bbr lh.fx_avg16_syn_bbr rh.fx_avg16_syn_bbr lh.ilf_avg16_syn_bbr rh.ilf_avg16_syn_bbr lh.mlf_avg16_syn_bbr rh.mlf_avg16_syn_bbr lh.or_avg16_syn_bbr rh.or_avg16_syn_bbr lh.slf1_avg16_syn_bbr rh.slf1_avg16_syn_bbr lh.slf2_avg16_syn_bbr rh.slf2_avg16_syn_bbr lh.slf3_avg16_syn_bbr rh.slf3_avg16_syn_bbr lh.uf_avg16_syn_bbr rh.uf_avg16_syn_bbr --slist /home/scratch/tmp.N51IKS.16.sub-BANDA002.txt --trk syn/acomm.bbr.prep.trk syn/cc.bodyc.bbr.prep.trk syn/cc.bodyp.bbr.prep.trk syn/cc.bodypf.bbr.prep.trk syn/cc.bodypm.bbr.prep.trk syn/cc.bodyt.bbr.prep.trk syn/cc.genu.bbr.prep.trk syn/cc.rostrum.bbr.prep.trk syn/cc.splenium.bbr.prep.trk syn/mcp.bbr.prep.trk syn/lh.af.bbr.prep.trk syn/rh.af.bbr.prep.trk syn/lh.ar.bbr.prep.trk syn/rh.ar.bbr.prep.trk syn/lh.atr.bbr.prep.trk syn/rh.atr.bbr.prep.trk syn/lh.cbd.bbr.prep.trk syn/rh.cbd.bbr.prep.trk syn/lh.cbv.bbr.prep.trk syn/rh.cbv.bbr.prep.trk syn/lh.cst.bbr.prep.trk syn/rh.cst.bbr.prep.trk syn/lh.emc.bbr.prep.trk syn/rh.emc.bbr.prep.trk syn/lh.fat.bbr.prep.trk syn/rh.fat.bbr.prep.trk syn/lh.fx.bbr.prep.trk syn/rh.fx.bbr.prep.trk syn/lh.ilf.bbr.prep.trk syn/rh.ilf.bbr.prep.trk syn/lh.mlf.bbr.prep.trk syn/rh.mlf.bbr.prep.trk syn/lh.or.bbr.prep.trk syn/rh.or.bbr.prep.trk syn/lh.slf1.bbr.prep.trk syn/rh.slf1.bbr.prep.trk syn/lh.slf2.bbr.prep.trk syn/rh.slf2.bbr.prep.trk syn/lh.slf3.bbr.prep.trk syn/rh.slf3.bbr.prep.trk syn/lh.uf.bbr.prep.trk syn/rh.uf.bbr.prep.trk --seg syn/aparc+aseg+thalnuc.nii.gz --cmask syn/cortex+2mm+crblm.nii.gz --lmask 0 0 0 0 0 0 0 0 0 0 0 0 10 49 10 49 0 0 0 0 16 16 0 0 0 0 28 60 0 0 0 0 10 49 0 0 0 0 0 0 0 0 --bmask /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/aparc+aseg_mask.nii.gz --fa /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit_FA.nii.gz --cptdir /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff --regnl /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/syn_warp.m3z --refnl /usr/local/freesurfer/7.3.2/trctrain/hcp/MGH35_HCP_FA_template.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/syn2diff.lta --ncpts 7 8 9 7 7 12 5 5 7 7 9 9 4 4 4 4 7 7 5 5 7 7 7 7 5 5 9 9 8 8 7 7 5 5 7 7 8 8 6 6 7 7 --trunc --aprior 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2/bin/dmri_train --outdir /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn --out acomm_avg16_syn_bbr cc.bodyc_avg16_syn_bbr cc.bodyp_avg16_syn_bbr cc.bodypf_avg16_syn_bbr cc.bodypm_avg16_syn_bbr cc.bodyt_avg16_syn_bbr cc.genu_avg16_syn_bbr cc.rostrum_avg16_syn_bbr cc.splenium_avg16_syn_bbr mcp_avg16_syn_bbr lh.af_avg16_syn_bbr rh.af_avg16_syn_bbr lh.ar_avg16_syn_bbr rh.ar_avg16_syn_bbr lh.atr_avg16_syn_bbr rh.atr_avg16_syn_bbr lh.cbd_avg16_syn_bbr rh.cbd_avg16_syn_bbr lh.cbv_avg16_syn_bbr rh.cbv_avg16_syn_bbr lh.cst_avg16_syn_bbr rh.cst_avg16_syn_bbr lh.emc_avg16_syn_bbr rh.emc_avg16_syn_bbr lh.fat_avg16_syn_bbr rh.fat_avg16_syn_bbr lh.fx_avg16_syn_bbr rh.fx_avg16_syn_bbr lh.ilf_avg16_syn_bbr rh.ilf_avg16_syn_bbr lh.mlf_avg16_syn_bbr rh.mlf_avg16_syn_bbr lh.or_avg16_syn_bbr rh.or_avg16_syn_bbr lh.slf1_avg16_syn_bbr rh.slf1_avg16_syn_bbr lh.slf2_avg16_syn_bbr rh.slf2_avg16_syn_bbr lh.slf3_avg16_syn_bbr rh.slf3_avg16_syn_bbr lh.uf_avg16_syn_bbr rh.uf_avg16_syn_bbr --slist /home/scratch/tmp.N51IKS.16.sub-BANDA002.txt --trk syn/acomm.bbr.prep.trk syn/cc.bodyc.bbr.prep.trk syn/cc.bodyp.bbr.prep.trk syn/cc.bodypf.bbr.prep.trk syn/cc.bodypm.bbr.prep.trk syn/cc.bodyt.bbr.prep.trk syn/cc.genu.bbr.prep.trk syn/cc.rostrum.bbr.prep.trk syn/cc.splenium.bbr.prep.trk syn/mcp.bbr.prep.trk syn/lh.af.bbr.prep.trk syn/rh.af.bbr.prep.trk syn/lh.ar.bbr.prep.trk syn/rh.ar.bbr.prep.trk syn/lh.atr.bbr.prep.trk syn/rh.atr.bbr.prep.trk syn/lh.cbd.bbr.prep.trk syn/rh.cbd.bbr.prep.trk syn/lh.cbv.bbr.prep.trk syn/rh.cbv.bbr.prep.trk syn/lh.cst.bbr.prep.trk syn/rh.cst.bbr.prep.trk syn/lh.emc.bbr.prep.trk syn/rh.emc.bbr.prep.trk syn/lh.fat.bbr.prep.trk syn/rh.fat.bbr.prep.trk syn/lh.fx.bbr.prep.trk syn/rh.fx.bbr.prep.trk syn/lh.ilf.bbr.prep.trk syn/rh.ilf.bbr.prep.trk syn/lh.mlf.bbr.prep.trk syn/rh.mlf.bbr.prep.trk syn/lh.or.bbr.prep.trk syn/rh.or.bbr.prep.trk syn/lh.slf1.bbr.prep.trk syn/rh.slf1.bbr.prep.trk syn/lh.slf2.bbr.prep.trk syn/rh.slf2.bbr.prep.trk syn/lh.slf3.bbr.prep.trk syn/rh.slf3.bbr.prep.trk syn/lh.uf.bbr.prep.trk syn/rh.uf.bbr.prep.trk --seg syn/aparc+aseg+thalnuc.nii.gz --cmask syn/cortex+2mm+crblm.nii.gz --lmask 0 0 0 0 0 0 0 0 0 0 0 0 10 49 10 49 0 0 0 0 16 16 0 0 0 0 28 60 0 0 0 0 10 49 0 0 0 0 0 0 0 0 --bmask /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/aparc+aseg_mask.nii.gz --fa /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit_FA.nii.gz --cptdir /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff --regnl /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/syn_warp.m3z --refnl /usr/local/freesurfer/7.3.2/trctrain/hcp/MGH35_HCP_FA_template.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/syn2diff.lta --ncpts 7 8 9 7 7 12 5 5 7 7 9 9 4 4 4 4 7 7 5 5 7 7 7 7 5 5 9 9 8 8 7 7 5 5 7 7 8 8 6 6 7 7 --trunc --aprior sysname Linux hostname curie.nmr.mgh.harvard.edu machine x86_64 user cy281 Output directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn Output directory in test subject's space: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff Training subject directory list: /home/scratch/tmp.N51IKS.16.sub-BANDA002.txt Location of streamline files relative to base: syn/acomm.bbr.prep.trk syn/cc.bodyc.bbr.prep.trk syn/cc.bodyp.bbr.prep.trk syn/cc.bodypf.bbr.prep.trk syn/cc.bodypm.bbr.prep.trk syn/cc.bodyt.bbr.prep.trk syn/cc.genu.bbr.prep.trk syn/cc.rostrum.bbr.prep.trk syn/cc.splenium.bbr.prep.trk syn/mcp.bbr.prep.trk syn/lh.af.bbr.prep.trk syn/rh.af.bbr.prep.trk syn/lh.ar.bbr.prep.trk syn/rh.ar.bbr.prep.trk syn/lh.atr.bbr.prep.trk syn/rh.atr.bbr.prep.trk syn/lh.cbd.bbr.prep.trk syn/rh.cbd.bbr.prep.trk syn/lh.cbv.bbr.prep.trk syn/rh.cbv.bbr.prep.trk syn/lh.cst.bbr.prep.trk syn/rh.cst.bbr.prep.trk syn/lh.emc.bbr.prep.trk syn/rh.emc.bbr.prep.trk syn/lh.fat.bbr.prep.trk syn/rh.fat.bbr.prep.trk syn/lh.fx.bbr.prep.trk syn/rh.fx.bbr.prep.trk syn/lh.ilf.bbr.prep.trk syn/rh.ilf.bbr.prep.trk syn/lh.mlf.bbr.prep.trk syn/rh.mlf.bbr.prep.trk syn/lh.or.bbr.prep.trk syn/rh.or.bbr.prep.trk syn/lh.slf1.bbr.prep.trk syn/rh.slf1.bbr.prep.trk syn/lh.slf2.bbr.prep.trk syn/rh.slf2.bbr.prep.trk syn/lh.slf3.bbr.prep.trk syn/rh.slf3.bbr.prep.trk syn/lh.uf.bbr.prep.trk syn/rh.uf.bbr.prep.trk Location of cortex masks relative to base: syn/cortex+2mm+crblm.nii.gz Label ID's from aparc+aseg to add to cortex mask: 0 0 0 0 0 0 0 0 0 0 0 0 10 49 10 49 0 0 0 0 16 16 0 0 0 0 28 60 0 0 0 0 10 49 0 0 0 0 0 0 0 0 Location of aparc+aseg's relative to base: syn/aparc+aseg+thalnuc.nii.gz Brain mask for output subject: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/aparc+aseg_mask.nii.gz FA map for output subject: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit_FA.nii.gz Affine registration from atlas to base for output subject: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/syn2diff.lta Nonlinear registration from atlas to base for output subject: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/syn_warp.m3z Nonlinear registration source reference for output subject: /autofs/vast/freesurfer/centos7_x86_64/7.3.2/trctrain/hcp/MGH35_HCP_FA_template.nii.gz Number of control points for initial spline: 7 8 9 7 7 12 5 5 7 7 9 9 4 4 4 4 7 7 5 5 7 7 7 7 5 5 9 9 8 8 7 7 5 5 7 7 8 8 6 6 7 7 Exclude previously chosen center streamlines: 0 Use truncated streamlines: 1 Compute priors on underlying anatomy: 1 Compute priors on shape: 0 Loading segmentation from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1001/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1001/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1006/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1006/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1007/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1007/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1008/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1008/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1009/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1009/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1010/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1010/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1011/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1011/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1012/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1012/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1013/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1013/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1015/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1015/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1016/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1016/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1017/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1017/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1019/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1019/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1021/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1021/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1023/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1023/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1024/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1024/syn/cortex+2mm+crblm.nii.gz Loading brain mask of output subject from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/aparc+aseg_mask.nii.gz Loading FA map of output subject from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit_FA.nii.gz Loading non-linear registration from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/syn_warp.m3z setting orig areas to linear transform determinant scaled 1.00 Inverting Morph Saving inverse Loading non-linear registration source for output subject from /autofs/vast/freesurfer/centos7_x86_64/7.3.2/trctrain/hcp/MGH35_HCP_FA_template.nii.gz Loading affine registration from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/syn2diff.lta LTA registration format detected FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -3.375, ref det = -3.375 Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1001/syn/acomm.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1006/syn/acomm.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1007/syn/acomm.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1008/syn/acomm.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1009/syn/acomm.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1010/syn/acomm.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1011/syn/acomm.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1012/syn/acomm.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1013/syn/acomm.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1015/syn/acomm.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1016/syn/acomm.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1017/syn/acomm.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1019/syn/acomm.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1021/syn/acomm.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1023/syn/acomm.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1024/syn/acomm.bbr.prep.trk Pre-sorted training .trk file detected INFO: Rejected 1 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Have 799 total streamlines (min/mean/max length: 62/76/91) Processing pathway 1 of 42... INFO: Have 799 non-truncated streamlines (min/mean/max length: 62/76/91) Computing path histograms INFO: Total streamline volume is 3442 voxels Finding outlier streamlines Updating streamline distance ranking INFO: Split streamlines into 23 segments Computing prior on underlying anatomy (all streamlines) Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.0978438 INFO: Points where local peaks in curvature occur are 34 79 34 (curv = 0.2237) 66 85 44 (curv = 0.125488) 81 75 38 (curv = 0.61522) INFO: Intermediate dominant points are 40 85 29 34 79 34 47 82 43 66 85 44 73 81 42 81 75 38 80 88 27 INFO: Final dominant points are 40 85 29 34 79 34 59 83 46 66 85 44 75 80 41 81 75 38 80 88 27 WARN: Defaulting to equidistant control points INFO: Selected control points are 40 85 29 36 78 36 45 81 42 58 83 47 70 83 43 81 75 38 80 88 27 INFO: Distances between consecutive points are 11 11 14 13 14 17 INFO: Selected control points in test subject's space are 53 77 14 48 71 23 57 75 29 70 78 33 80 77 29 92 68 26 91 79 11 INFO: Distances between consecutive points in test subject's space are 12 12 14 11 15 19 WARN: Could not find satisfactory control point fit - try 1 Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.10095 INFO: Points where local peaks in curvature occur are 35 77 36 (curv = 0.500724) 54 85 47 (curv = 0.102218) 67 85 44 (curv = 0.102135) 83 77 37 (curv = 0.50042) INFO: Intermediate dominant points are 41 85 26 35 77 36 54 85 47 67 85 44 76 80 41 83 77 37 77 90 27 INFO: Final dominant points are 41 85 26 35 77 36 54 85 47 67 85 44 78 78 39 83 77 37 77 90 27 WARN: Defaulting to equidistant control points INFO: Selected control points are 41 85 26 36 77 37 47 83 44 60 84 46 72 82 43 82 77 37 77 90 27 INFO: Distances between consecutive points are 14 14 13 13 13 17 INFO: Selected control points in test subject's space are 54 76 10 48 70 25 59 77 31 71 79 32 82 76 30 93 70 24 88 80 11 INFO: Distances between consecutive points in test subject's space are 17 14 12 12 14 17 WARN: Could not find satisfactory control point fit - try 2 Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 6 INFO: Minimum allowable curvature at a dominant point is 0.0949322 INFO: Points where local peaks in curvature occur are 36 79 33 (curv = 0.273289) 52 85 44 (curv = 0.108915) 77 79 40 (curv = 0.160807) INFO: Intermediate dominant points are 40 84 27 36 79 33 45 81 42 52 85 44 69 84 43 77 79 40 80 88 28 INFO: Final dominant points are 40 84 27 36 79 33 46 81 43 52 85 44 73 82 42 77 79 40 80 88 28 INFO: Selected control points are 40 84 27 36 79 34 45 81 42 53 85 46 72 83 43 79 77 39 80 88 28 INFO: Distances between consecutive points are 9 12 10 19 10 16 INFO: Selected control points in test subject's space are 52 75 12 48 72 21 57 75 29 65 80 32 82 77 30 90 70 27 91 79 12 INFO: Distances between consecutive points in test subject's space are 10 12 10 17 11 18 Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_* Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_cpts_7.nii.gz Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/acomm_avg16_syn_bbr_cpts_7.nii.gz Done in 1.9 sec. Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1001/syn/cc.bodyc.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1006/syn/cc.bodyc.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1007/syn/cc.bodyc.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1008/syn/cc.bodyc.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1009/syn/cc.bodyc.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1010/syn/cc.bodyc.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1011/syn/cc.bodyc.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1012/syn/cc.bodyc.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1013/syn/cc.bodyc.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1015/syn/cc.bodyc.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1016/syn/cc.bodyc.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1017/syn/cc.bodyc.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1019/syn/cc.bodyc.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1021/syn/cc.bodyc.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1023/syn/cc.bodyc.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1024/syn/cc.bodyc.bbr.prep.trk Pre-sorted training .trk file detected INFO: Rejected 1 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Have 19999 total streamlines (min/mean/max length: 62/82/102) Processing pathway 2 of 42... INFO: Have 19999 non-truncated streamlines (min/mean/max length: 62/82/102) Computing path histograms INFO: Total streamline volume is 31151 voxels Finding outlier streamlines Updating streamline distance ranking INFO: Split streamlines into 23 segments Computing prior on underlying anatomy (all streamlines) Selecting 8 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.0913773 INFO: Points where local peaks in curvature occur are 46 73 72 (curv = 0.268371) 50 73 67 (curv = 0.109161) 58 74 63 (curv = 0.118489) 70 71 68 (curv = 0.152383) 71 70 74 (curv = 0.200961) 65 70 83 (curv = 0.135084) INFO: Intermediate dominant points are 56 76 86 50 73 81 46 73 72 58 74 63 64 73 64 71 70 74 67 71 80 62 72 88 INFO: Final dominant points are 56 76 86 49 73 78 46 73 72 58 74 63 69 71 68 71 70 74 65 70 83 62 72 88 INFO: Selected control points are 56 76 86 49 73 79 46 73 72 58 74 63 70 71 68 71 70 74 65 70 83 62 72 88 INFO: Distances between consecutive points are 10 8 15 13 6 11 6 INFO: Selected control points in test subject's space are 67 76 71 61 71 64 58 71 58 70 71 49 81 69 54 83 69 60 77 70 69 74 72 74 INFO: Distances between consecutive points in test subject's space are 10 7 15 12 6 11 6 Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_* Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_cpts_8.nii.gz Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/cc.bodyc_avg16_syn_bbr_cpts_8.nii.gz Done in 5.688 sec. Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1001/syn/cc.bodyp.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1006/syn/cc.bodyp.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1007/syn/cc.bodyp.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1008/syn/cc.bodyp.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1009/syn/cc.bodyp.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1010/syn/cc.bodyp.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1011/syn/cc.bodyp.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1012/syn/cc.bodyp.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1013/syn/cc.bodyp.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1015/syn/cc.bodyp.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1016/syn/cc.bodyp.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1017/syn/cc.bodyp.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1019/syn/cc.bodyp.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1021/syn/cc.bodyp.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1023/syn/cc.bodyp.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1024/syn/cc.bodyp.bbr.prep.trk Pre-sorted training .trk file detected INFO: Rejected 0 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Have 20000 total streamlines (min/mean/max length: 68/93/117) Processing pathway 3 of 42... INFO: Have 20000 non-truncated streamlines (min/mean/max length: 68/93/117) Computing path histograms INFO: Total streamline volume is 36726 voxels Finding outlier streamlines Updating streamline distance ranking INFO: Split streamlines into 26 segments Computing prior on underlying anatomy (all streamlines) Selecting 9 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.0910976 INFO: Points where local peaks in curvature occur are 51 52 79 (curv = 0.169947) 46 57 71 (curv = 0.161976) 50 60 64 (curv = 0.117439) 60 64 61 (curv = 0.195542) 70 58 64 (curv = 0.192623) 72 57 68 (curv = 0.139069) 70 54 75 (curv = 0.10718) INFO: Intermediate dominant points are 57 52 85 51 52 79 46 57 71 50 60 64 60 64 61 70 58 64 70 54 75 69 51 78 63 44 82 INFO: Final dominant points are 57 52 85 51 52 79 46 57 71 50 60 64 60 64 61 70 58 64 70 54 75 66 49 82 63 44 82 INFO: Selected control points are 57 52 85 50 53 79 47 56 71 50 60 64 60 64 61 70 59 65 71 54 74 66 49 81 63 44 82 INFO: Distances between consecutive points are 9 9 9 11 12 10 10 6 INFO: Selected control points in test subject's space are 69 52 76 62 53 69 59 54 61 62 57 54 72 62 50 81 57 54 82 54 64 78 49 72 75 43 74 INFO: Distances between consecutive points in test subject's space are 10 9 8 12 11 10 10 7 Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_* Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_cpts_9.nii.gz Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/cc.bodyp_avg16_syn_bbr_cpts_9.nii.gz Done in 6.177 sec. Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1001/syn/cc.bodypf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1006/syn/cc.bodypf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1007/syn/cc.bodypf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1008/syn/cc.bodypf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1009/syn/cc.bodypf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1010/syn/cc.bodypf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1011/syn/cc.bodypf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1012/syn/cc.bodypf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1013/syn/cc.bodypf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1015/syn/cc.bodypf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1016/syn/cc.bodypf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1017/syn/cc.bodypf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1019/syn/cc.bodypf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1021/syn/cc.bodypf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1023/syn/cc.bodypf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1024/syn/cc.bodypf.bbr.prep.trk Pre-sorted training .trk file detected INFO: Rejected 5 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Have 19995 total streamlines (min/mean/max length: 56/74/93) Processing pathway 4 of 42... INFO: Have 19995 non-truncated streamlines (min/mean/max length: 56/74/93) Computing path histograms INFO: Total streamline volume is 19658 voxels Finding outlier streamlines Updating streamline distance ranking INFO: Split streamlines into 21 segments Computing prior on underlying anatomy (all streamlines) Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.0988134 INFO: Points where local peaks in curvature occur are 49 102 68 (curv = 0.105943) 47 100 63 (curv = 0.30607) 64 95 56 (curv = 0.124442) 72 100 63 (curv = 0.29651) INFO: Intermediate dominant points are 54 107 76 51 103 69 47 100 63 57 94 57 64 95 56 72 100 63 66 107 76 INFO: Final dominant points are 54 107 76 49 102 68 47 100 63 57 94 56 64 95 56 72 100 63 66 107 76 INFO: Selected control points are 54 107 76 50 102 68 47 99 63 57 94 57 65 95 57 71 99 62 66 107 76 INFO: Distances between consecutive points are 10 7 13 8 9 17 INFO: Selected control points in test subject's space are 65 107 58 61 99 50 59 95 46 69 90 40 76 91 40 82 95 44 78 107 58 INFO: Distances between consecutive points in test subject's space are 12 6 13 7 8 19 Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_* Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_cpts_7.nii.gz Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/cc.bodypf_avg16_syn_bbr_cpts_7.nii.gz Done in 4.956 sec. Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1001/syn/cc.bodypm.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1006/syn/cc.bodypm.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1007/syn/cc.bodypm.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1008/syn/cc.bodypm.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1009/syn/cc.bodypm.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1010/syn/cc.bodypm.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1011/syn/cc.bodypm.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1012/syn/cc.bodypm.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1013/syn/cc.bodypm.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1015/syn/cc.bodypm.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1016/syn/cc.bodypm.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1017/syn/cc.bodypm.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1019/syn/cc.bodypm.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1021/syn/cc.bodypm.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1023/syn/cc.bodypm.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1024/syn/cc.bodypm.bbr.prep.trk Pre-sorted training .trk file detected INFO: Rejected 0 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Have 20000 total streamlines (min/mean/max length: 55/73/88) Processing pathway 5 of 42... INFO: Have 20000 non-truncated streamlines (min/mean/max length: 55/73/88) Computing path histograms INFO: Total streamline volume is 22331 voxels Finding outlier streamlines Updating streamline distance ranking INFO: Split streamlines into 21 segments Computing prior on underlying anatomy (all streamlines) Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.100593 INFO: Points where local peaks in curvature occur are 53 86 82 (curv = 0.144184) 49 85 70 (curv = 0.17254) 62 83 62 (curv = 0.149306) 70 86 70 (curv = 0.318657) INFO: Intermediate dominant points are 57 87 85 53 86 82 49 85 70 62 83 62 70 86 70 68 86 74 62 88 82 INFO: Final dominant points are 57 87 85 53 86 82 49 85 70 62 83 62 70 86 70 67 87 78 62 88 82 INFO: Selected control points are 57 87 85 53 86 82 49 85 70 61 84 62 70 86 70 66 87 78 62 88 82 INFO: Distances between consecutive points are 5 13 14 12 9 6 INFO: Selected control points in test subject's space are 68 87 69 64 85 66 60 82 54 72 81 46 81 84 54 78 86 62 74 87 65 INFO: Distances between consecutive points in test subject's space are 5 13 14 12 9 5 Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_* Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_cpts_7.nii.gz Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/cc.bodypm_avg16_syn_bbr_cpts_7.nii.gz Done in 5.232 sec. Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1001/syn/cc.bodyt.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1006/syn/cc.bodyt.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1007/syn/cc.bodyt.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1008/syn/cc.bodyt.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1009/syn/cc.bodyt.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1010/syn/cc.bodyt.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1011/syn/cc.bodyt.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1012/syn/cc.bodyt.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1013/syn/cc.bodyt.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1015/syn/cc.bodyt.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1016/syn/cc.bodyt.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1017/syn/cc.bodyt.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1019/syn/cc.bodyt.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1021/syn/cc.bodyt.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1023/syn/cc.bodyt.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1024/syn/cc.bodyt.bbr.prep.trk Pre-sorted training .trk file detected INFO: Rejected 0 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Have 980 total streamlines (min/mean/max length: 90/132/163) Processing pathway 6 of 42... INFO: Have 977 non-truncated streamlines (min/mean/max length: 90/132/163) Computing path histograms INFO: Total streamline volume is 14224 voxels Finding outlier streamlines Updating streamline distance ranking INFO: Split streamlines into 37 segments Computing prior on underlying anatomy (all streamlines) Selecting 12 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.118159 INFO: Points where local peaks in curvature occur are 24 75 49 (curv = 0.417235) 33 67 51 (curv = 0.128558) 38 64 53 (curv = 0.148226) 41 56 62 (curv = 0.13124) 45 54 66 (curv = 0.280553) 53 59 62 (curv = 0.179818) 72 55 66 (curv = 0.24289) 77 58 62 (curv = 0.187796) 76 63 57 (curv = 0.248228) 87 69 49 (curv = 0.153874) 90 70 50 (curv = 0.147425) INFO: Intermediate dominant points are 26 80 46 24 75 49 33 67 51 38 64 53 45 54 66 53 59 62 65 59 61 72 55 66 76 63 57 81 65 53 87 69 49 96 67 54 INFO: Final dominant points are 26 80 46 24 75 49 33 67 51 38 64 53 45 54 66 53 59 62 68 57 63 72 55 66 76 63 57 83 65 52 87 69 49 96 67 54 INFO: Selected control points are 26 80 46 24 75 49 33 68 51 38 64 54 44 54 65 54 60 61 67 58 62 73 55 65 77 62 57 82 65 52 88 70 48 96 67 54 INFO: Distances between consecutive points are 6 12 7 16 12 13 7 11 8 9 10 INFO: Selected control points in test subject's space are 36 75 33 33 70 37 44 63 40 50 59 43 57 51 56 66 57 51 78 55 52 84 53 56 87 58 47 93 61 41 101 65 37 110 63 43 INFO: Distances between consecutive points in test subject's space are 7 13 8 17 12 12 7 11 9 10 11 Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_* Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_cpts_12.nii.gz Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/cc.bodyt_avg16_syn_bbr_cpts_12.nii.gz Done in 2.048 sec. Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1001/syn/cc.genu.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1006/syn/cc.genu.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1007/syn/cc.genu.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1008/syn/cc.genu.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1009/syn/cc.genu.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1010/syn/cc.genu.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1011/syn/cc.genu.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1012/syn/cc.genu.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1013/syn/cc.genu.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1015/syn/cc.genu.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1016/syn/cc.genu.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1017/syn/cc.genu.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1019/syn/cc.genu.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1021/syn/cc.genu.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1023/syn/cc.genu.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1024/syn/cc.genu.bbr.prep.trk Pre-sorted training .trk file detected INFO: Rejected 0 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Have 20000 total streamlines (min/mean/max length: 41/54/64) Processing pathway 7 of 42... INFO: Have 20000 non-truncated streamlines (min/mean/max length: 41/54/64) Computing path histograms INFO: Total streamline volume is 17747 voxels Finding outlier streamlines Updating streamline distance ranking INFO: Split streamlines into 15 segments Computing prior on underlying anatomy (all streamlines) Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.0943966 INFO: Points where local peaks in curvature occur are 48 105 54 (curv = 0.172646) 60 99 52 (curv = 0.102154) 72 108 52 (curv = 0.223441) INFO: Intermediate dominant points are 53 118 61 48 105 54 60 99 52 72 108 52 67 119 58 INFO: Final dominant points are 53 118 61 48 105 54 60 99 52 72 108 52 67 119 58 INFO: Selected control points are 53 118 61 48 105 53 60 99 52 72 108 51 67 119 58 INFO: Distances between consecutive points are 16 13 15 14 INFO: Selected control points in test subject's space are 64 116 41 60 100 35 71 94 35 83 103 33 79 116 37 INFO: Distances between consecutive points in test subject's space are 18 13 15 14 Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_* Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_cpts_5.nii.gz Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/cc.genu_avg16_syn_bbr_cpts_5.nii.gz Done in 4.348 sec. Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1001/syn/cc.rostrum.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1006/syn/cc.rostrum.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1007/syn/cc.rostrum.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1008/syn/cc.rostrum.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1009/syn/cc.rostrum.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1010/syn/cc.rostrum.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1011/syn/cc.rostrum.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1012/syn/cc.rostrum.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1013/syn/cc.rostrum.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1015/syn/cc.rostrum.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1016/syn/cc.rostrum.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1017/syn/cc.rostrum.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1019/syn/cc.rostrum.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1021/syn/cc.rostrum.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1023/syn/cc.rostrum.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1024/syn/cc.rostrum.bbr.prep.trk Pre-sorted training .trk file detected INFO: Rejected 6 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Have 19994 total streamlines (min/mean/max length: 41/52/64) Processing pathway 8 of 42... INFO: Have 19994 non-truncated streamlines (min/mean/max length: 41/52/64) Computing path histograms INFO: Total streamline volume is 7047 voxels Finding outlier streamlines Updating streamline distance ranking INFO: Split streamlines into 15 segments Computing prior on underlying anatomy (all streamlines) Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.106406 INFO: Points where local peaks in curvature occur are 48 107 43 (curv = 0.138747) 65 100 47 (curv = 0.143741) 70 107 44 (curv = 0.115785) INFO: Intermediate dominant points are 54 120 41 48 107 43 65 100 47 70 108 44 65 118 47 INFO: Final dominant points are 54 120 41 48 107 43 65 100 47 68 114 42 65 118 47 INFO: Selected control points are 54 120 41 48 106 44 64 100 47 69 114 42 65 118 47 INFO: Distances between consecutive points are 16 17 16 8 INFO: Selected control points in test subject's space are 65 115 20 60 100 26 75 94 30 80 108 22 77 113 27 INFO: Distances between consecutive points in test subject's space are 17 17 17 8 Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_* Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_cpts_5.nii.gz Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/cc.rostrum_avg16_syn_bbr_cpts_5.nii.gz Done in 4.171 sec. Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1001/syn/cc.splenium.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1006/syn/cc.splenium.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1007/syn/cc.splenium.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1008/syn/cc.splenium.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1009/syn/cc.splenium.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1010/syn/cc.splenium.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1011/syn/cc.splenium.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1012/syn/cc.splenium.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1013/syn/cc.splenium.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1015/syn/cc.splenium.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1016/syn/cc.splenium.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1017/syn/cc.splenium.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1019/syn/cc.splenium.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1021/syn/cc.splenium.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1023/syn/cc.splenium.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1024/syn/cc.splenium.bbr.prep.trk Pre-sorted training .trk file detected INFO: Rejected 0 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Have 16414 total streamlines (min/mean/max length: 67/80/94) Processing pathway 9 of 42... INFO: Have 15635 non-truncated streamlines (min/mean/max length: 67/80/94) Computing path histograms INFO: Total streamline volume is 18707 voxels Finding outlier streamlines Updating streamline distance ranking INFO: Split streamlines into 24 segments Computing prior on underlying anatomy (all streamlines) Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.0958326 INFO: Points where local peaks in curvature occur are 46 35 68 (curv = 0.17107) 45 37 61 (curv = 0.173215) 42 45 60 (curv = 0.169726) 59 59 56 (curv = 0.120286) 70 54 55 (curv = 0.11446) 75 44 59 (curv = 0.127828) 72 37 60 (curv = 0.251364) INFO: Intermediate dominant points are 53 34 71 45 37 61 45 50 59 59 59 56 70 54 55 72 37 60 65 35 70 INFO: Final dominant points are 53 34 71 45 37 61 51 54 57 59 59 56 70 54 55 72 37 60 65 35 70 WARN: Defaulting to equidistant control points INFO: Selected control points are 53 34 71 45 37 63 44 49 60 58 59 56 71 53 56 74 39 60 65 35 70 INFO: Distances between consecutive points are 12 12 18 14 15 14 INFO: Selected control points in test subject's space are 65 30 66 57 33 57 57 44 53 70 55 46 82 49 48 85 34 54 77 31 64 INFO: Distances between consecutive points in test subject's space are 12 12 18 14 16 13 WARN: Could not find satisfactory control point fit - try 1 Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.086178 INFO: Points where local peaks in curvature occur are 47 36 61 (curv = 0.21312) 42 45 60 (curv = 0.155722) 61 58 54 (curv = 0.120233) 75 44 58 (curv = 0.231001) INFO: Intermediate dominant points are 49 34 70 47 36 61 42 45 60 61 58 54 70 53 57 75 44 58 67 37 68 INFO: Final dominant points are 49 34 70 47 36 61 42 45 60 61 58 54 72 50 58 75 44 58 67 37 68 INFO: Selected control points are 49 34 70 47 36 60 42 47 60 60 59 55 72 49 58 75 43 58 67 37 68 INFO: Distances between consecutive points are 10 12 22 16 7 14 INFO: Selected control points in test subject's space are 61 30 64 59 32 54 55 43 53 72 55 45 83 44 51 86 39 52 79 33 61 INFO: Distances between consecutive points in test subject's space are 10 12 22 17 6 13 Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_* Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_cpts_7.nii.gz Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/cc.splenium_avg16_syn_bbr_cpts_7.nii.gz Done in 4.904 sec. Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1001/syn/mcp.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1006/syn/mcp.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1007/syn/mcp.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1008/syn/mcp.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1009/syn/mcp.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1010/syn/mcp.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1011/syn/mcp.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1012/syn/mcp.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1013/syn/mcp.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1015/syn/mcp.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1016/syn/mcp.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1017/syn/mcp.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1019/syn/mcp.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1021/syn/mcp.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1023/syn/mcp.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1024/syn/mcp.bbr.prep.trk Pre-sorted training .trk file detected INFO: Rejected 0 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Have 20000 total streamlines (min/mean/max length: 64/79/103) Processing pathway 10 of 42... INFO: Have 20000 non-truncated streamlines (min/mean/max length: 64/79/103) Computing path histograms INFO: Total streamline volume is 17078 voxels Finding outlier streamlines Updating streamline distance ranking INFO: Split streamlines into 23 segments Computing prior on underlying anatomy (all streamlines) Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.0879623 INFO: Points where local peaks in curvature occur are 45 42 28 (curv = 0.279718) 58 65 33 (curv = 0.155128) 64 63 33 (curv = 0.157546) 75 48 27 (curv = 0.157949) INFO: Intermediate dominant points are 52 38 32 45 42 28 48 58 30 58 65 33 64 63 33 75 48 27 69 39 27 INFO: Final dominant points are 52 38 32 45 42 28 51 62 32 58 65 33 64 63 33 75 48 27 69 39 27 INFO: Selected control points are 52 38 32 44 43 28 51 62 32 58 64 33 65 63 32 75 48 27 69 39 27 INFO: Distances between consecutive points are 10 21 7 7 19 11 INFO: Selected control points in test subject's space are 63 29 27 54 35 22 63 55 23 70 56 23 76 55 23 89 39 20 82 29 21 INFO: Distances between consecutive points in test subject's space are 12 22 7 6 21 12 Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_* Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_cpts_7.nii.gz Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/mcp_avg16_syn_bbr_cpts_7.nii.gz Done in 4.978 sec. Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1001/syn/lh.af.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1006/syn/lh.af.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1007/syn/lh.af.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1008/syn/lh.af.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1009/syn/lh.af.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1010/syn/lh.af.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1011/syn/lh.af.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1012/syn/lh.af.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1013/syn/lh.af.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1015/syn/lh.af.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1016/syn/lh.af.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1017/syn/lh.af.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1019/syn/lh.af.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1021/syn/lh.af.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1023/syn/lh.af.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1024/syn/lh.af.bbr.prep.trk Pre-sorted training .trk file detected INFO: Rejected 1 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Have 19999 total streamlines (min/mean/max length: 55/95/136) Processing pathway 11 of 42... INFO: Have 19999 non-truncated streamlines (min/mean/max length: 55/95/136) Computing path histograms INFO: Total streamline volume is 23640 voxels Finding outlier streamlines Updating streamline distance ranking INFO: Split streamlines into 24 segments Computing prior on underlying anatomy (all streamlines) Selecting 9 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.105382 INFO: Points where local peaks in curvature occur are 82 101 54 (curv = 0.386895) 82 98 58 (curv = 0.144301) 77 90 61 (curv = 0.164632) 80 65 65 (curv = 0.105922) 81 55 58 (curv = 0.106091) 85 53 50 (curv = 0.204158) 92 56 46 (curv = 0.329442) INFO: Intermediate dominant points are 87 101 55 82 101 54 77 90 61 79 82 63 80 65 65 81 55 58 85 53 50 92 56 46 90 61 43 INFO: Final dominant points are 87 101 55 82 101 54 77 90 61 80 71 64 80 65 65 81 55 58 85 53 50 92 56 46 90 61 43 INFO: Selected control points are 87 101 55 83 101 55 78 90 62 80 72 64 80 65 65 81 55 58 85 54 49 92 56 46 90 61 43 INFO: Distances between consecutive points are 4 14 18 7 12 10 8 6 INFO: Selected control points in test subject's space are 99 97 38 94 97 38 88 86 47 91 69 52 91 63 54 91 52 49 96 49 41 104 51 37 102 56 33 INFO: Distances between consecutive points in test subject's space are 5 15 18 6 12 10 9 7 Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_* Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_cpts_9.nii.gz Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lh.af_avg16_syn_bbr_cpts_9.nii.gz Done in 6.75 sec. Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1001/syn/rh.af.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1006/syn/rh.af.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1007/syn/rh.af.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1008/syn/rh.af.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1009/syn/rh.af.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1010/syn/rh.af.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1011/syn/rh.af.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1012/syn/rh.af.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1013/syn/rh.af.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1015/syn/rh.af.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1016/syn/rh.af.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1017/syn/rh.af.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1019/syn/rh.af.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1021/syn/rh.af.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1023/syn/rh.af.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1024/syn/rh.af.bbr.prep.trk Pre-sorted training .trk file detected INFO: Rejected 0 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Have 20000 total streamlines (min/mean/max length: 53/96/132) Processing pathway 12 of 42... INFO: Have 20000 non-truncated streamlines (min/mean/max length: 53/96/132) Computing path histograms INFO: Total streamline volume is 22174 voxels Finding outlier streamlines Updating streamline distance ranking INFO: Split streamlines into 24 segments Computing prior on underlying anatomy (all streamlines) Selecting 9 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.101348 INFO: Points where local peaks in curvature occur are 38 103 62 (curv = 0.340817) 37 104 60 (curv = 0.315579) 39 102 56 (curv = 0.370128) 40 65 67 (curv = 0.156527) 36 56 64 (curv = 0.137975) INFO: Intermediate dominant points are 34 98 64 39 102 56 41 95 60 42 84 65 40 72 66 40 65 67 36 56 64 31 52 51 23 53 46 INFO: Final dominant points are 34 98 64 39 102 56 42 91 63 41 79 66 40 71 67 40 65 67 36 56 64 28 55 47 23 53 46 INFO: Selected control points are 34 98 64 39 102 57 42 90 63 41 79 66 40 70 67 39 66 67 37 55 64 29 53 48 23 53 46 INFO: Distances between consecutive points are 9 14 11 9 4 12 18 6 INFO: Selected control points in test subject's space are 45 95 48 52 98 40 54 86 48 54 75 52 52 67 55 52 63 56 50 52 55 41 48 40 32 47 38 INFO: Distances between consecutive points in test subject's space are 11 15 12 9 4 11 18 9 Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_* Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_cpts_9.nii.gz Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.af_avg16_syn_bbr_cpts_9.nii.gz Done in 6.501 sec. Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1001/syn/lh.ar.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1006/syn/lh.ar.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1007/syn/lh.ar.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1008/syn/lh.ar.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1009/syn/lh.ar.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1010/syn/lh.ar.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1011/syn/lh.ar.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1012/syn/lh.ar.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1013/syn/lh.ar.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1015/syn/lh.ar.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1016/syn/lh.ar.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1017/syn/lh.ar.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1019/syn/lh.ar.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1021/syn/lh.ar.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1023/syn/lh.ar.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1024/syn/lh.ar.bbr.prep.trk Pre-sorted training .trk file detected INFO: Rejected 0 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Have 131 total streamlines (min/mean/max length: 30/46/66) Processing pathway 13 of 42... INFO: Have 124 non-truncated streamlines (min/mean/max length: 30/45/66) Computing path histograms INFO: Total streamline volume is 1690 voxels Finding outlier streamlines Updating streamline distance ranking INFO: Split streamlines into 11 segments Computing prior on underlying anatomy (all streamlines) Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.11386 INFO: Points where local peaks in curvature occur are 75 66 52 (curv = 0.156002) 79 64 53 (curv = 0.197052) 84 66 50 (curv = 0.122889) INFO: Intermediate dominant points are 67 65 49 79 64 53 86 67 50 92 74 51 INFO: Final dominant points are 67 65 49 79 64 53 88 72 49 92 74 51 WARN: Defaulting to equidistant control points INFO: Selected control points are 67 65 49 76 65 53 85 67 50 92 74 51 INFO: Distances between consecutive points are 10 10 10 INFO: Selected control points in test subject's space are 77 59 39 86 60 42 97 62 39 105 70 39 INFO: Distances between consecutive points in test subject's space are 10 12 11 WARN: Could not find satisfactory control point fit - try 1 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.127765 INFO: Points where local peaks in curvature occur are 76 64 54 (curv = 0.230819) 85 68 49 (curv = 0.161118) INFO: Intermediate dominant points are 68 65 51 76 64 54 85 68 49 91 74 51 INFO: Final dominant points are 68 65 51 76 64 54 85 68 49 91 74 51 WARN: Defaulting to equidistant control points INFO: Selected control points are 68 65 51 78 64 54 85 68 49 91 74 51 INFO: Distances between consecutive points are 10 9 9 INFO: Selected control points in test subject's space are 78 60 40 88 60 43 97 63 38 104 70 39 INFO: Distances between consecutive points in test subject's space are 10 11 10 WARN: Could not find satisfactory control point fit - try 2 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.0913291 INFO: Points where local peaks in curvature occur are 78 63 55 (curv = 0.25228) 92 76 48 (curv = 0.112464) INFO: Intermediate dominant points are 68 65 48 78 63 55 88 71 49 93 83 46 INFO: Final dominant points are 68 65 48 78 63 55 92 76 48 93 83 46 WARN: Defaulting to equidistant control points INFO: Selected control points are 68 65 48 77 63 54 87 69 49 93 83 46 INFO: Distances between consecutive points are 11 13 16 INFO: Selected control points in test subject's space are 78 59 38 87 59 43 99 64 38 107 78 32 INFO: Distances between consecutive points in test subject's space are 10 14 17 WARN: Could not find satisfactory control point fit - try 3 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0889558 INFO: Points where local peaks in curvature occur are 78 63 54 (curv = 0.267566) INFO: Intermediate dominant points are 66 65 47 78 63 54 86 68 49 93 80 48 INFO: Final dominant points are 66 65 47 78 63 54 89 73 48 93 80 48 WARN: Defaulting to equidistant control points INFO: Selected control points are 66 65 47 77 63 53 85 68 49 93 80 48 INFO: Distances between consecutive points are 13 10 14 INFO: Selected control points in test subject's space are 77 59 37 87 58 42 97 63 38 106 76 35 INFO: Distances between consecutive points in test subject's space are 11 12 16 WARN: Could not find satisfactory control point fit - try 4 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.124947 INFO: Points where local peaks in curvature occur are 75 66 51 (curv = 0.147586) 80 63 52 (curv = 0.242606) 84 66 49 (curv = 0.150003) INFO: Intermediate dominant points are 65 64 48 80 63 52 86 67 49 96 74 51 INFO: Final dominant points are 65 64 48 80 63 52 90 72 49 96 74 51 WARN: Defaulting to equidistant control points INFO: Selected control points are 65 64 48 77 65 53 86 67 49 96 74 51 INFO: Distances between consecutive points are 13 10 12 INFO: Selected control points in test subject's space are 76 58 38 87 60 42 98 62 38 110 70 39 INFO: Distances between consecutive points in test subject's space are 12 12 14 WARN: Could not find satisfactory control point fit - try 5 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.144092 INFO: Points where local peaks in curvature occur are 76 64 55 (curv = 0.171817) 79 64 54 (curv = 0.159537) 84 67 47 (curv = 0.231667) INFO: Intermediate dominant points are 69 64 53 76 64 55 84 67 47 93 75 51 INFO: Final dominant points are 69 64 53 76 64 55 84 67 47 93 75 51 WARN: Defaulting to equidistant control points INFO: Selected control points are 69 64 53 79 63 53 85 68 48 93 75 51 INFO: Distances between consecutive points are 10 9 11 INFO: Selected control points in test subject's space are 79 59 42 90 58 42 97 63 37 106 71 39 INFO: Distances between consecutive points in test subject's space are 11 10 12 WARN: Could not find satisfactory control point fit - try 6 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.136611 INFO: Points where local peaks in curvature occur are 76 65 56 (curv = 0.248658) 85 68 49 (curv = 0.166641) INFO: Intermediate dominant points are 69 64 49 76 65 56 85 68 49 88 75 51 INFO: Final dominant points are 69 64 49 76 65 56 85 68 49 88 75 51 WARN: Defaulting to equidistant control points INFO: Selected control points are 69 64 49 74 65 55 82 65 50 88 75 51 INFO: Distances between consecutive points are 8 9 12 INFO: Selected control points in test subject's space are 79 58 39 84 61 44 93 60 39 100 71 39 INFO: Distances between consecutive points in test subject's space are 8 10 13 WARN: Could not find satisfactory control point fit - try 7 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.14371 INFO: Points where local peaks in curvature occur are 74 65 54 (curv = 0.195041) 77 63 55 (curv = 0.203294) 83 65 51 (curv = 0.150492) INFO: Intermediate dominant points are 66 66 48 77 63 55 83 65 51 88 73 51 INFO: Final dominant points are 66 66 48 77 63 55 83 65 51 88 73 51 WARN: Defaulting to equidistant control points INFO: Selected control points are 66 66 48 74 65 54 83 64 51 88 73 51 INFO: Distances between consecutive points are 10 10 10 INFO: Selected control points in test subject's space are 76 60 38 84 60 43 94 59 40 100 69 39 INFO: Distances between consecutive points in test subject's space are 9 10 12 WARN: Could not find satisfactory control point fit - try 8 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.109222 INFO: Points where local peaks in curvature occur are 79 63 52 (curv = 0.363122) 85 70 46 (curv = 0.135536) INFO: Intermediate dominant points are 68 65 50 79 63 52 85 70 46 94 82 48 INFO: Final dominant points are 68 65 50 79 63 52 85 70 46 94 82 48 WARN: Defaulting to equidistant control points INFO: Selected control points are 68 65 50 80 63 52 86 70 47 94 82 48 INFO: Distances between consecutive points are 12 10 14 INFO: Selected control points in test subject's space are 78 60 39 91 58 42 98 65 36 108 78 34 INFO: Distances between consecutive points in test subject's space are 13 12 17 WARN: Could not find satisfactory control point fit - try 9 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.09412 INFO: Points where local peaks in curvature occur are 79 64 51 (curv = 0.176745) 86 69 48 (curv = 0.156014) 91 77 47 (curv = 0.178617) INFO: Intermediate dominant points are 68 64 49 79 64 51 86 69 48 93 81 48 INFO: Final dominant points are 68 64 49 79 64 51 86 69 48 93 81 48 WARN: Defaulting to equidistant control points INFO: Selected control points are 68 64 49 79 64 51 88 71 48 93 81 48 INFO: Distances between consecutive points are 11 12 11 INFO: Selected control points in test subject's space are 78 58 39 90 59 40 101 66 36 106 77 35 INFO: Distances between consecutive points in test subject's space are 12 14 12 WARN: Could not find satisfactory control point fit - try 10 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.106997 INFO: Points where local peaks in curvature occur are 74 65 51 (curv = 0.178045) 80 66 49 (curv = 0.113529) 84 65 50 (curv = 0.314792) INFO: Intermediate dominant points are 67 65 48 74 65 51 84 65 50 94 73 51 INFO: Final dominant points are 67 65 48 74 65 51 84 65 50 94 73 51 WARN: Defaulting to equidistant control points INFO: Selected control points are 67 65 48 77 66 50 85 68 50 94 73 51 INFO: Distances between consecutive points are 10 8 10 INFO: Selected control points in test subject's space are 77 59 38 88 61 39 97 63 39 108 69 39 INFO: Distances between consecutive points in test subject's space are 11 9 13 WARN: Could not find satisfactory control point fit - try 11 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 6 INFO: Minimum allowable curvature at a dominant point is 0.128553 INFO: Points where local peaks in curvature occur are 71 65 54 (curv = 0.232789) 77 65 55 (curv = 0.218626) 85 68 50 (curv = 0.143194) INFO: Intermediate dominant points are 66 66 54 71 65 54 77 65 55 88 73 51 INFO: Final dominant points are 66 66 54 71 65 54 77 65 55 88 73 51 WARN: Defaulting to equidistant control points INFO: Selected control points are 66 66 54 73 65 54 82 64 52 88 73 51 INFO: Distances between consecutive points are 7 9 11 INFO: Selected control points in test subject's space are 77 62 42 83 60 43 93 59 41 100 69 39 INFO: Distances between consecutive points in test subject's space are 6 10 12 WARN: Could not find satisfactory control point fit - try 12 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 6 INFO: Minimum allowable curvature at a dominant point is 0.121786 INFO: Points where local peaks in curvature occur are 78 64 52 (curv = 0.173128) 84 67 47 (curv = 0.165037) INFO: Intermediate dominant points are 68 64 49 78 64 52 84 67 47 89 74 48 INFO: Final dominant points are 68 64 49 78 64 52 84 67 47 89 74 48 WARN: Defaulting to equidistant control points INFO: Selected control points are 68 64 49 76 65 53 83 66 48 89 74 48 INFO: Distances between consecutive points are 9 9 10 INFO: Selected control points in test subject's space are 78 58 39 86 60 42 95 61 37 102 70 36 INFO: Distances between consecutive points in test subject's space are 9 10 11 WARN: Could not find satisfactory control point fit - try 13 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 6 INFO: Minimum allowable curvature at a dominant point is 0.0910688 INFO: Points where local peaks in curvature occur are 75 66 51 (curv = 0.0933627) 82 65 50 (curv = 0.20928) INFO: Intermediate dominant points are 68 65 48 75 66 51 82 65 50 88 73 48 INFO: Final dominant points are 68 65 48 75 66 51 82 65 50 88 73 48 WARN: Defaulting to equidistant control points INFO: Selected control points are 68 65 48 76 66 51 83 66 50 88 73 48 INFO: Distances between consecutive points are 9 7 9 INFO: Selected control points in test subject's space are 78 59 38 86 61 40 95 61 39 101 68 36 INFO: Distances between consecutive points in test subject's space are 8 9 10 WARN: Could not find satisfactory control point fit - try 14 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 6 INFO: Minimum allowable curvature at a dominant point is 0.146571 INFO: Points where local peaks in curvature occur are 75 65 55 (curv = 0.218786) 81 64 51 (curv = 0.197808) INFO: Intermediate dominant points are 68 64 50 75 65 55 81 64 51 87 71 49 INFO: Final dominant points are 68 64 50 75 65 55 81 64 51 87 71 49 WARN: Defaulting to equidistant control points INFO: Selected control points are 68 64 50 75 65 55 81 64 51 87 71 49 INFO: Distances between consecutive points are 9 7 9 INFO: Selected control points in test subject's space are 78 59 40 85 61 44 92 59 40 99 66 37 INFO: Distances between consecutive points in test subject's space are 8 8 10 WARN: Could not find satisfactory control point fit - try 15 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 6 INFO: Minimum allowable curvature at a dominant point is 0.114393 INFO: Points where local peaks in curvature occur are 84 66 49 (curv = 0.302078) INFO: Intermediate dominant points are 66 65 47 76 66 50 84 66 49 91 71 50 INFO: Final dominant points are 66 65 47 79 67 49 84 66 49 91 71 50 WARN: Defaulting to equidistant control points INFO: Selected control points are 66 65 47 75 66 50 84 66 49 91 71 50 INFO: Distances between consecutive points are 10 9 9 INFO: Selected control points in test subject's space are 77 59 37 85 61 39 96 61 38 104 67 39 INFO: Distances between consecutive points in test subject's space are 8 11 10 WARN: Could not find satisfactory control point fit - try 16 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 5 INFO: Minimum allowable curvature at a dominant point is 0.102696 INFO: Points where local peaks in curvature occur are 83 65 50 (curv = 0.288043) INFO: Intermediate dominant points are 67 66 48 76 66 50 83 65 50 89 72 51 INFO: Final dominant points are 67 66 48 79 66 49 83 65 50 89 72 51 WARN: Defaulting to equidistant control points INFO: Selected control points are 67 66 48 75 66 50 83 65 49 89 72 51 INFO: Distances between consecutive points are 8 8 9 INFO: Selected control points in test subject's space are 77 60 37 85 61 39 95 60 38 102 68 39 INFO: Distances between consecutive points in test subject's space are 8 10 11 WARN: Could not find satisfactory control point fit - try 17 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0808479 INFO: Points where local peaks in curvature occur are 79 63 54 (curv = 0.221503) 82 64 52 (curv = 0.0906143) INFO: Intermediate dominant points are 67 65 49 79 63 54 88 71 49 94 80 49 INFO: Final dominant points are 67 65 49 79 63 54 90 75 48 94 80 49 WARN: Defaulting to equidistant control points INFO: Selected control points are 67 65 49 78 63 54 87 69 49 94 80 49 INFO: Distances between consecutive points are 12 12 13 INFO: Selected control points in test subject's space are 77 59 39 88 59 43 99 64 38 108 76 36 INFO: Distances between consecutive points in test subject's space are 12 13 15 WARN: Could not find satisfactory control point fit - try 18 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.105971 INFO: Points where local peaks in curvature occur are 79 63 54 (curv = 0.275855) 84 66 48 (curv = 0.262339) 90 73 48 (curv = 0.114425) INFO: Intermediate dominant points are 65 64 50 79 63 54 84 66 48 94 79 47 INFO: Final dominant points are 65 64 50 79 63 54 84 66 48 94 79 47 WARN: Defaulting to equidistant control points INFO: Selected control points are 65 64 50 79 63 54 86 68 48 94 79 47 INFO: Distances between consecutive points are 15 10 14 INFO: Selected control points in test subject's space are 76 59 40 89 59 44 98 63 37 108 75 34 INFO: Distances between consecutive points in test subject's space are 14 12 16 WARN: Could not find satisfactory control point fit - try 19 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.0878862 INFO: Points where local peaks in curvature occur are 77 63 54 (curv = 0.384539) 91 73 48 (curv = 0.107122) INFO: Intermediate dominant points are 64 64 49 77 63 54 87 68 50 96 75 50 INFO: Final dominant points are 64 64 49 77 63 54 91 73 48 96 75 50 WARN: Defaulting to equidistant control points INFO: Selected control points are 64 64 49 76 63 53 87 68 50 96 75 50 INFO: Distances between consecutive points are 13 12 11 INFO: Selected control points in test subject's space are 75 59 39 86 58 42 99 63 39 110 71 38 INFO: Distances between consecutive points in test subject's space are 11 14 14 WARN: Could not find satisfactory control point fit - try 20 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.129738 INFO: Points where local peaks in curvature occur are 77 64 56 (curv = 0.370154) 83 65 50 (curv = 0.216037) 88 70 49 (curv = 0.172908) INFO: Intermediate dominant points are 65 66 49 77 64 56 88 70 49 94 74 52 INFO: Final dominant points are 65 66 49 77 64 56 88 70 49 94 74 52 WARN: Defaulting to equidistant control points INFO: Selected control points are 65 66 49 75 64 55 84 67 50 94 74 52 INFO: Distances between consecutive points are 12 11 12 INFO: Selected control points in test subject's space are 75 60 38 85 60 44 96 62 39 108 70 40 INFO: Distances between consecutive points in test subject's space are 12 12 14 WARN: Could not find satisfactory control point fit - try 21 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.113558 INFO: Points where local peaks in curvature occur are 76 63 55 (curv = 0.351123) 83 65 50 (curv = 0.192343) INFO: Intermediate dominant points are 65 65 49 76 63 55 84 67 49 90 79 47 INFO: Final dominant points are 65 65 49 76 63 55 87 72 50 90 79 47 WARN: Defaulting to equidistant control points INFO: Selected control points are 65 65 49 75 63 55 83 66 49 90 79 47 INFO: Distances between consecutive points are 12 10 15 INFO: Selected control points in test subject's space are 76 60 39 85 59 44 95 61 38 103 74 34 INFO: Distances between consecutive points in test subject's space are 10 12 16 WARN: Could not find satisfactory control point fit - try 22 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.150164 INFO: Points where local peaks in curvature occur are 76 61 58 (curv = 0.5728) 82 64 50 (curv = 0.223499) INFO: Intermediate dominant points are 67 63 51 76 61 58 82 64 50 94 75 52 INFO: Final dominant points are 67 63 51 76 61 58 82 64 50 94 75 52 WARN: Defaulting to equidistant control points INFO: Selected control points are 67 63 51 77 61 58 85 68 51 94 75 52 INFO: Distances between consecutive points are 12 13 11 INFO: Selected control points in test subject's space are 78 58 41 87 57 48 97 64 40 108 71 40 INFO: Distances between consecutive points in test subject's space are 11 15 13 WARN: Could not find satisfactory control point fit - try 23 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.10475 INFO: Points where local peaks in curvature occur are 77 65 54 (curv = 0.179033) 82 65 51 (curv = 0.209135) INFO: Intermediate dominant points are 69 64 52 77 65 54 82 65 51 94 75 53 INFO: Final dominant points are 69 64 52 77 65 54 82 65 51 94 75 53 WARN: Defaulting to equidistant control points INFO: Selected control points are 69 64 52 77 64 54 86 68 49 94 75 53 INFO: Distances between consecutive points are 8 11 11 INFO: Selected control points in test subject's space are 79 59 41 87 60 43 98 63 38 108 71 41 INFO: Distances between consecutive points in test subject's space are 8 12 13 WARN: Could not find satisfactory control point fit - try 24 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.10895 INFO: Points where local peaks in curvature occur are 76 62 55 (curv = 0.309377) 85 67 49 (curv = 0.167742) INFO: Intermediate dominant points are 69 63 49 76 62 55 85 67 49 95 80 48 INFO: Final dominant points are 69 63 49 76 62 55 85 67 49 95 80 48 WARN: Defaulting to equidistant control points INFO: Selected control points are 69 63 49 79 63 54 85 68 48 95 80 48 INFO: Distances between consecutive points are 11 10 16 INFO: Selected control points in test subject's space are 80 58 39 89 59 44 97 63 37 109 76 35 INFO: Distances between consecutive points in test subject's space are 10 11 18 WARN: Could not find satisfactory control point fit - try 25 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.110564 INFO: Points where local peaks in curvature occur are 75 64 57 (curv = 0.393495) 81 64 53 (curv = 0.130531) INFO: Intermediate dominant points are 67 65 51 75 64 57 81 64 53 91 81 49 INFO: Final dominant points are 67 65 51 75 64 57 81 64 53 91 81 49 WARN: Defaulting to equidistant control points INFO: Selected control points are 67 65 51 76 64 56 85 68 50 91 81 49 INFO: Distances between consecutive points are 10 12 14 INFO: Selected control points in test subject's space are 77 60 40 86 60 45 97 63 39 104 77 36 INFO: Distances between consecutive points in test subject's space are 10 13 16 WARN: Could not find satisfactory control point fit - try 26 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0975311 INFO: Points where local peaks in curvature occur are 79 63 52 (curv = 0.243805) 84 67 48 (curv = 0.120395) 90 74 48 (curv = 0.12025) INFO: Intermediate dominant points are 67 66 49 79 63 52 90 74 48 94 81 48 INFO: Final dominant points are 67 66 49 79 63 52 90 74 48 94 81 48 WARN: Defaulting to equidistant control points INFO: Selected control points are 67 66 49 79 63 52 88 71 48 94 81 48 INFO: Distances between consecutive points are 13 13 12 INFO: Selected control points in test subject's space are 77 60 38 90 58 41 101 66 36 108 77 35 INFO: Distances between consecutive points in test subject's space are 13 14 13 WARN: Could not find satisfactory control point fit - try 27 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.124191 INFO: Points where local peaks in curvature occur are 75 65 51 (curv = 0.15854) 81 65 50 (curv = 0.131917) 86 70 48 (curv = 0.174296) INFO: Intermediate dominant points are 69 64 51 75 65 51 86 70 48 92 75 52 INFO: Final dominant points are 69 64 51 75 65 51 86 70 48 92 75 52 WARN: Defaulting to equidistant control points INFO: Selected control points are 69 64 51 75 65 51 85 69 48 92 75 52 INFO: Distances between consecutive points are 6 11 10 INFO: Selected control points in test subject's space are 79 59 40 85 60 40 97 64 37 105 71 40 INFO: Distances between consecutive points in test subject's space are 6 13 11 WARN: Could not find satisfactory control point fit - try 28 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0889552 INFO: Points where local peaks in curvature occur are 80 62 53 (curv = 0.234657) 83 65 49 (curv = 0.15428) INFO: Intermediate dominant points are 65 66 53 80 62 53 87 69 48 93 81 48 INFO: Final dominant points are 65 66 53 80 62 53 91 75 47 93 81 48 WARN: Defaulting to equidistant control points INFO: Selected control points are 65 66 53 79 62 53 87 69 48 93 81 48 INFO: Distances between consecutive points are 15 12 13 INFO: Selected control points in test subject's space are 76 61 42 89 57 43 99 64 37 106 77 35 INFO: Distances between consecutive points in test subject's space are 14 14 15 WARN: Could not find satisfactory control point fit - try 29 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.0903944 INFO: Points where local peaks in curvature occur are 78 62 54 (curv = 0.320363) 87 68 49 (curv = 0.142117) INFO: Intermediate dominant points are 67 65 53 78 62 54 87 68 49 95 80 49 INFO: Final dominant points are 67 65 53 78 62 54 87 68 49 95 80 49 WARN: Defaulting to equidistant control points INFO: Selected control points are 67 65 53 79 63 54 87 69 48 95 80 49 INFO: Distances between consecutive points are 12 12 14 INFO: Selected control points in test subject's space are 78 60 42 89 59 44 99 64 37 109 76 36 INFO: Distances between consecutive points in test subject's space are 11 13 16 WARN: Could not find satisfactory control point fit - try 30 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0977941 INFO: Points where local peaks in curvature occur are 77 63 56 (curv = 0.384068) 80 63 52 (curv = 0.126564) INFO: Intermediate dominant points are 64 66 50 77 63 56 87 68 50 96 76 50 INFO: Final dominant points are 64 66 50 77 63 56 93 71 50 96 76 50 WARN: Defaulting to equidistant control points INFO: Selected control points are 64 66 50 76 63 56 86 67 50 96 76 50 INFO: Distances between consecutive points are 14 12 13 INFO: Selected control points in test subject's space are 75 61 39 86 59 45 98 62 39 110 72 38 INFO: Distances between consecutive points in test subject's space are 13 14 16 WARN: Could not find satisfactory control point fit - try 31 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.12874 INFO: Points where local peaks in curvature occur are 80 58 54 (curv = 0.671496) INFO: Intermediate dominant points are 71 65 53 80 58 54 86 68 48 96 74 51 INFO: Final dominant points are 71 65 53 80 58 54 90 73 49 96 74 51 WARN: Defaulting to equidistant control points INFO: Selected control points are 71 65 53 80 58 54 86 68 48 96 74 51 INFO: Distances between consecutive points are 11 13 12 INFO: Selected control points in test subject's space are 81 60 42 90 54 45 98 63 37 110 70 39 INFO: Distances between consecutive points in test subject's space are 11 14 14 WARN: Could not find satisfactory control point fit - try 32 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.123519 INFO: Points where local peaks in curvature occur are 79 62 55 (curv = 0.320146) 83 64 51 (curv = 0.142652) INFO: Intermediate dominant points are 69 64 50 79 62 55 86 68 51 95 75 49 INFO: Final dominant points are 69 64 50 79 62 55 92 69 50 95 75 49 WARN: Defaulting to equidistant control points INFO: Selected control points are 69 64 50 78 62 55 86 68 51 95 75 49 INFO: Distances between consecutive points are 10 11 12 INFO: Selected control points in test subject's space are 79 59 39 88 58 45 98 64 40 109 71 37 INFO: Distances between consecutive points in test subject's space are 11 13 13 WARN: Could not find satisfactory control point fit - try 33 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0899078 INFO: Points where local peaks in curvature occur are 73 64 53 (curv = 0.117991) 77 63 50 (curv = 0.148287) 82 65 50 (curv = 0.134416) 90 74 48 (curv = 0.175063) INFO: Intermediate dominant points are 66 66 51 77 63 50 90 74 48 94 81 47 INFO: Final dominant points are 66 66 51 77 63 50 90 74 48 94 81 47 WARN: Defaulting to equidistant control points INFO: Selected control points are 66 66 51 77 63 50 88 70 48 94 81 47 INFO: Distances between consecutive points are 11 13 13 INFO: Selected control points in test subject's space are 76 61 40 87 58 39 101 65 37 108 77 34 INFO: Distances between consecutive points in test subject's space are 11 16 14 WARN: Could not find satisfactory control point fit - try 34 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.13372 INFO: Points where local peaks in curvature occur are 74 65 53 (curv = 0.196976) 78 60 55 (curv = 0.674159) 84 62 50 (curv = 0.161854) INFO: Intermediate dominant points are 68 65 51 78 60 55 86 69 48 94 79 50 INFO: Final dominant points are 68 65 51 78 60 55 89 74 47 94 79 50 WARN: Defaulting to equidistant control points INFO: Selected control points are 68 65 51 78 60 55 86 69 48 94 79 50 INFO: Distances between consecutive points are 12 14 13 INFO: Selected control points in test subject's space are 78 60 40 88 56 45 98 64 37 108 75 37 INFO: Distances between consecutive points in test subject's space are 12 15 15 WARN: Could not find satisfactory control point fit - try 35 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.133419 INFO: Points where local peaks in curvature occur are 76 65 53 (curv = 0.15709) 82 64 52 (curv = 0.208384) 89 71 50 (curv = 0.230538) INFO: Intermediate dominant points are 67 63 49 82 64 52 89 71 50 96 71 54 INFO: Final dominant points are 67 63 49 82 64 52 89 71 50 96 71 54 WARN: Defaulting to equidistant control points INFO: Selected control points are 67 63 49 76 65 53 86 67 51 96 71 54 INFO: Distances between consecutive points are 10 10 11 INFO: Selected control points in test subject's space are 78 58 39 86 60 42 98 62 40 110 67 43 INFO: Distances between consecutive points in test subject's space are 9 12 13 WARN: Could not find satisfactory control point fit - try 36 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0928183 INFO: Points where local peaks in curvature occur are 78 62 54 (curv = 0.291962) 81 64 52 (curv = 0.122451) 88 68 50 (curv = 0.151233) INFO: Intermediate dominant points are 67 65 48 78 62 54 88 69 50 96 76 49 INFO: Final dominant points are 67 65 48 78 62 54 92 71 51 96 76 49 WARN: Defaulting to equidistant control points INFO: Selected control points are 67 65 48 77 63 54 87 68 50 96 76 49 INFO: Distances between consecutive points are 12 12 12 INFO: Selected control points in test subject's space are 77 59 38 87 59 43 99 63 39 110 72 37 INFO: Distances between consecutive points in test subject's space are 11 13 14 WARN: Could not find satisfactory control point fit - try 37 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.142394 INFO: Points where local peaks in curvature occur are 79 62 54 (curv = 0.549032) 88 71 48 (curv = 0.242158) INFO: Intermediate dominant points are 69 62 49 79 62 54 88 71 48 96 70 52 INFO: Final dominant points are 69 62 49 79 62 54 88 71 48 96 70 52 WARN: Defaulting to equidistant control points INFO: Selected control points are 69 62 49 79 62 54 86 69 48 96 70 52 INFO: Distances between consecutive points are 11 12 11 INFO: Selected control points in test subject's space are 80 57 39 89 58 44 98 64 37 110 66 41 INFO: Distances between consecutive points in test subject's space are 10 13 13 WARN: Could not find satisfactory control point fit - try 38 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.111394 INFO: Points where local peaks in curvature occur are 71 66 53 (curv = 0.163664) 75 65 54 (curv = 0.118201) 80 64 52 (curv = 0.14031) INFO: Intermediate dominant points are 66 63 52 71 66 53 80 64 52 90 75 49 INFO: Final dominant points are 66 63 52 71 66 53 80 64 52 90 75 49 WARN: Defaulting to equidistant control points INFO: Selected control points are 66 63 52 73 65 53 83 67 51 90 75 49 INFO: Distances between consecutive points are 7 10 11 INFO: Selected control points in test subject's space are 77 58 41 83 60 42 95 63 40 103 71 37 INFO: Distances between consecutive points in test subject's space are 6 13 12 WARN: Could not find satisfactory control point fit - try 39 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.146416 INFO: Points where local peaks in curvature occur are 80 59 54 (curv = 0.650101) INFO: Intermediate dominant points are 68 65 52 80 59 54 82 64 50 90 74 49 INFO: Final dominant points are 68 65 52 80 59 54 86 68 48 90 74 49 WARN: Defaulting to equidistant control points INFO: Selected control points are 68 65 52 77 62 53 82 63 51 90 74 49 INFO: Distances between consecutive points are 10 5 14 INFO: Selected control points in test subject's space are 78 60 41 87 57 43 93 58 41 103 70 37 INFO: Distances between consecutive points in test subject's space are 10 6 16 WARN: Could not find satisfactory control point fit - try 40 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.135296 INFO: Points where local peaks in curvature occur are 80 61 55 (curv = 0.359415) 87 69 50 (curv = 0.179739) INFO: Intermediate dominant points are 67 65 51 80 61 55 87 69 50 89 75 51 INFO: Final dominant points are 67 65 51 80 61 55 87 69 50 89 75 51 WARN: Defaulting to equidistant control points INFO: Selected control points are 67 65 51 78 62 56 84 67 51 89 75 51 INFO: Distances between consecutive points are 12 9 9 INFO: Selected control points in test subject's space are 77 60 40 88 58 46 96 63 40 101 71 39 INFO: Distances between consecutive points in test subject's space are 13 11 9 WARN: Could not find satisfactory control point fit - try 41 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.122186 INFO: Points where local peaks in curvature occur are 73 65 53 (curv = 0.123033) 77 62 55 (curv = 0.414025) 92 71 52 (curv = 0.199992) INFO: Intermediate dominant points are 65 63 49 77 62 55 92 71 52 95 77 48 INFO: Final dominant points are 65 63 49 77 62 55 92 71 52 95 77 48 WARN: Defaulting to equidistant control points INFO: Selected control points are 65 63 49 77 63 55 88 68 51 95 77 48 INFO: Distances between consecutive points are 13 13 12 INFO: Selected control points in test subject's space are 76 58 39 87 59 44 100 64 40 109 73 35 INFO: Distances between consecutive points in test subject's space are 12 14 14 WARN: Could not find satisfactory control point fit - try 42 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.131214 INFO: Points where local peaks in curvature occur are 77 64 54 (curv = 0.239317) 79 63 52 (curv = 0.217911) 82 64 49 (curv = 0.143775) INFO: Intermediate dominant points are 66 66 52 77 64 54 83 66 48 88 74 50 INFO: Final dominant points are 66 66 52 77 64 54 86 70 47 88 74 50 WARN: Defaulting to equidistant control points INFO: Selected control points are 66 66 52 77 64 54 83 65 49 88 74 50 INFO: Distances between consecutive points are 11 8 10 INFO: Selected control points in test subject's space are 76 61 41 87 60 43 95 60 38 100 70 38 INFO: Distances between consecutive points in test subject's space are 11 9 11 WARN: Could not find satisfactory control point fit - try 43 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.137195 INFO: Points where local peaks in curvature occur are 76 64 53 (curv = 0.146404) 80 62 53 (curv = 0.347151) INFO: Intermediate dominant points are 67 64 50 80 62 53 84 66 48 89 73 48 INFO: Final dominant points are 67 64 50 80 62 53 87 69 48 89 73 48 WARN: Defaulting to equidistant control points INFO: Selected control points are 67 64 50 77 64 53 84 65 49 89 73 48 INFO: Distances between consecutive points are 10 8 9 INFO: Selected control points in test subject's space are 78 59 40 87 59 42 96 60 38 102 68 36 INFO: Distances between consecutive points in test subject's space are 9 10 10 WARN: Could not find satisfactory control point fit - try 44 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.106765 INFO: Points where local peaks in curvature occur are 74 66 51 (curv = 0.158065) 80 63 52 (curv = 0.223142) INFO: Intermediate dominant points are 66 63 48 80 63 52 86 66 50 96 71 53 INFO: Final dominant points are 66 63 48 80 63 52 90 70 50 96 71 53 WARN: Defaulting to equidistant control points INFO: Selected control points are 66 63 48 75 65 51 86 66 50 96 71 53 INFO: Distances between consecutive points are 10 11 12 INFO: Selected control points in test subject's space are 77 57 38 85 60 40 98 61 39 110 67 42 INFO: Distances between consecutive points in test subject's space are 9 13 14 WARN: Could not find satisfactory control point fit - try 45 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.122416 INFO: Points where local peaks in curvature occur are 76 63 55 (curv = 0.328162) 83 66 48 (curv = 0.134445) INFO: Intermediate dominant points are 66 66 51 76 63 55 83 66 48 88 73 48 INFO: Final dominant points are 66 66 51 76 63 55 83 66 48 88 73 48 WARN: Defaulting to equidistant control points INFO: Selected control points are 66 66 51 75 63 54 82 65 50 88 73 48 INFO: Distances between consecutive points are 10 8 10 INFO: Selected control points in test subject's space are 76 61 40 85 58 43 93 60 39 101 68 36 INFO: Distances between consecutive points in test subject's space are 10 9 12 WARN: Could not find satisfactory control point fit - try 46 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.121214 INFO: Points where local peaks in curvature occur are 76 62 55 (curv = 0.243208) 85 65 49 (curv = 0.163132) INFO: Intermediate dominant points are 66 67 53 76 62 55 85 65 49 88 73 48 INFO: Final dominant points are 66 67 53 76 62 55 85 65 49 88 73 48 WARN: Defaulting to equidistant control points INFO: Selected control points are 66 67 53 75 63 55 84 65 50 88 73 48 INFO: Distances between consecutive points are 10 10 9 INFO: Selected control points in test subject's space are 76 62 41 85 59 44 96 60 39 101 68 36 INFO: Distances between consecutive points in test subject's space are 10 12 10 WARN: Could not find satisfactory control point fit - try 47 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.139736 INFO: Points where local peaks in curvature occur are 76 64 58 (curv = 0.736363) INFO: Intermediate dominant points are 69 64 52 76 64 58 87 71 51 93 84 46 INFO: Final dominant points are 69 64 52 76 64 58 89 77 50 93 84 46 WARN: Defaulting to equidistant control points INFO: Selected control points are 69 64 52 77 63 58 86 70 51 93 84 46 INFO: Distances between consecutive points are 10 13 16 INFO: Selected control points in test subject's space are 79 59 41 87 59 47 98 66 40 107 79 32 INFO: Distances between consecutive points in test subject's space are 10 15 18 WARN: Could not find satisfactory control point fit - try 48 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.138329 INFO: Points where local peaks in curvature occur are 71 65 54 (curv = 0.145969) 78 61 56 (curv = 0.477517) 84 68 48 (curv = 0.187177) INFO: Intermediate dominant points are 66 66 57 78 61 56 84 68 48 92 73 52 INFO: Final dominant points are 66 66 57 78 61 56 84 68 48 92 73 52 WARN: Defaulting to equidistant control points INFO: Selected control points are 66 66 57 76 62 56 83 65 49 92 73 52 INFO: Distances between consecutive points are 11 10 12 INFO: Selected control points in test subject's space are 77 62 45 86 58 46 95 60 38 105 69 40 INFO: Distances between consecutive points in test subject's space are 10 12 14 WARN: Could not find satisfactory control point fit - try 49 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.140285 INFO: Points where local peaks in curvature occur are 73 66 48 (curv = 0.342555) 75 63 51 (curv = 0.170326) 79 62 54 (curv = 0.406548) INFO: Intermediate dominant points are 67 63 48 79 62 54 86 67 50 95 71 53 INFO: Final dominant points are 67 63 48 79 62 54 91 71 50 95 71 53 WARN: Defaulting to equidistant control points INFO: Selected control points are 67 63 48 75 63 52 85 66 50 95 71 53 INFO: Distances between consecutive points are 9 11 12 INFO: Selected control points in test subject's space are 78 57 38 85 58 41 97 61 39 109 67 42 INFO: Distances between consecutive points in test subject's space are 8 13 14 WARN: Could not find satisfactory control point fit - try 50 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.132357 INFO: Points where local peaks in curvature occur are 76 60 57 (curv = 0.434719) 84 61 51 (curv = 0.232275) INFO: Intermediate dominant points are 66 63 50 76 60 57 84 61 51 94 76 51 INFO: Final dominant points are 66 63 50 76 60 57 84 61 51 94 76 51 WARN: Defaulting to equidistant control points INFO: Selected control points are 66 63 50 77 60 57 84 66 48 94 76 51 INFO: Distances between consecutive points are 13 13 14 INFO: Selected control points in test subject's space are 77 58 40 87 56 47 96 61 37 108 72 39 INFO: Distances between consecutive points in test subject's space are 12 14 16 WARN: Could not find satisfactory control point fit - try 51 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.0911548 INFO: Points where local peaks in curvature occur are 79 63 55 (curv = 0.208533) 82 64 51 (curv = 0.140876) 88 70 49 (curv = 0.120347) INFO: Intermediate dominant points are 68 66 55 79 63 55 88 70 49 94 76 53 INFO: Final dominant points are 68 66 55 79 63 55 88 70 49 94 76 53 WARN: Defaulting to equidistant control points INFO: Selected control points are 68 66 55 79 63 55 87 69 49 94 76 53 INFO: Distances between consecutive points are 11 12 11 INFO: Selected control points in test subject's space are 78 62 43 89 59 45 99 64 38 107 72 41 INFO: Distances between consecutive points in test subject's space are 12 13 12 WARN: Could not find satisfactory control point fit - try 52 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.100348 INFO: Points where local peaks in curvature occur are 79 64 52 (curv = 0.151996) 85 67 48 (curv = 0.18166) INFO: Intermediate dominant points are 68 69 55 77 65 53 85 67 48 92 76 50 INFO: Final dominant points are 68 69 55 80 65 52 85 67 48 92 76 50 WARN: Defaulting to equidistant control points INFO: Selected control points are 68 69 55 76 65 53 85 68 48 92 76 50 INFO: Distances between consecutive points are 9 11 11 INFO: Selected control points in test subject's space are 78 65 42 86 60 42 97 63 37 105 72 38 INFO: Distances between consecutive points in test subject's space are 9 12 12 WARN: Could not find satisfactory control point fit - try 53 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.132529 INFO: Points where local peaks in curvature occur are 76 64 55 (curv = 0.316568) 83 67 50 (curv = 0.200883) INFO: Intermediate dominant points are 66 63 47 76 64 55 83 67 50 87 72 51 INFO: Final dominant points are 66 63 47 76 64 55 83 67 50 87 72 51 WARN: Defaulting to equidistant control points INFO: Selected control points are 66 63 47 73 65 54 81 65 52 87 72 51 INFO: Distances between consecutive points are 10 8 9 INFO: Selected control points in test subject's space are 77 57 37 83 60 43 92 61 41 99 68 39 INFO: Distances between consecutive points in test subject's space are 9 9 10 WARN: Could not find satisfactory control point fit - try 54 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.124431 INFO: Points where local peaks in curvature occur are 78 64 51 (curv = 0.257538) 83 67 48 (curv = 0.208848) INFO: Intermediate dominant points are 66 65 49 78 64 51 86 71 50 93 75 52 INFO: Final dominant points are 66 65 49 78 64 51 90 73 50 93 75 52 WARN: Defaulting to equidistant control points INFO: Selected control points are 66 65 49 77 64 51 85 69 49 93 75 52 INFO: Distances between consecutive points are 11 10 10 INFO: Selected control points in test subject's space are 77 59 39 87 59 40 97 64 38 106 71 40 INFO: Distances between consecutive points in test subject's space are 10 11 12 WARN: Could not find satisfactory control point fit - try 55 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.119806 INFO: Points where local peaks in curvature occur are 76 67 49 (curv = 0.253343) 80 63 51 (curv = 0.376198) INFO: Intermediate dominant points are 64 68 51 80 63 51 86 69 48 96 77 51 INFO: Final dominant points are 64 68 51 80 63 51 90 74 48 96 77 51 WARN: Defaulting to equidistant control points INFO: Selected control points are 64 68 51 76 67 49 85 68 48 96 77 51 INFO: Distances between consecutive points are 12 9 15 INFO: Selected control points in test subject's space are 74 63 40 86 62 38 97 63 37 110 73 38 INFO: Distances between consecutive points in test subject's space are 12 11 16 WARN: Could not find satisfactory control point fit - try 56 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.127891 INFO: Points where local peaks in curvature occur are 73 68 50 (curv = 0.190204) 81 64 51 (curv = 0.202624) 83 63 49 (curv = 0.313128) INFO: Intermediate dominant points are 65 65 48 83 63 49 88 72 47 93 84 44 INFO: Final dominant points are 65 65 48 83 63 49 92 78 48 93 84 44 WARN: Defaulting to equidistant control points INFO: Selected control points are 65 65 48 78 66 51 88 70 47 93 84 44 INFO: Distances between consecutive points are 13 11 15 INFO: Selected control points in test subject's space are 76 59 38 89 61 40 101 65 36 107 79 30 INFO: Distances between consecutive points in test subject's space are 13 13 16 WARN: Could not find satisfactory control point fit - try 57 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0688289 INFO: Points where local peaks in curvature occur are 73 64 52 (curv = 0.0871978) 83 65 49 (curv = 0.148825) INFO: Intermediate dominant points are 65 66 56 83 65 49 88 69 49 93 80 47 INFO: Final dominant points are 65 66 56 83 65 49 91 75 48 93 80 47 WARN: Defaulting to equidistant control points INFO: Selected control points are 65 66 56 76 63 50 88 69 49 93 80 47 INFO: Distances between consecutive points are 13 13 12 INFO: Selected control points in test subject's space are 76 62 44 86 58 39 101 64 38 106 76 34 INFO: Distances between consecutive points in test subject's space are 12 16 14 WARN: Could not find satisfactory control point fit - try 58 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.160963 INFO: Points where local peaks in curvature occur are 80 59 54 (curv = 0.575899) INFO: Intermediate dominant points are 68 65 52 80 59 54 83 65 50 87 72 49 INFO: Final dominant points are 68 65 52 80 59 54 85 68 49 87 72 49 WARN: Defaulting to equidistant control points INFO: Selected control points are 68 65 52 77 61 54 82 64 50 87 72 49 INFO: Distances between consecutive points are 10 7 9 INFO: Selected control points in test subject's space are 78 60 41 87 57 44 93 59 39 99 68 37 INFO: Distances between consecutive points in test subject's space are 10 8 11 WARN: Could not find satisfactory control point fit - try 59 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.13808 INFO: Points where local peaks in curvature occur are 77 67 50 (curv = 0.203079) 81 63 52 (curv = 0.426033) INFO: Intermediate dominant points are 65 63 48 77 67 50 81 63 52 95 72 53 INFO: Final dominant points are 65 63 48 77 67 50 81 63 52 95 72 53 WARN: Defaulting to equidistant control points INFO: Selected control points are 65 63 48 77 67 50 85 66 50 95 72 53 INFO: Distances between consecutive points are 13 8 12 INFO: Selected control points in test subject's space are 76 57 38 88 62 39 97 61 39 109 68 41 INFO: Distances between consecutive points in test subject's space are 13 9 14 WARN: Could not find satisfactory control point fit - try 60 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.138388 INFO: Points where local peaks in curvature occur are 75 65 57 (curv = 0.252645) 79 63 54 (curv = 0.179559) 86 68 49 (curv = 0.156802) INFO: Intermediate dominant points are 66 66 53 75 65 57 86 68 49 88 75 51 INFO: Final dominant points are 66 66 53 75 65 57 86 68 49 88 75 51 WARN: Defaulting to equidistant control points INFO: Selected control points are 66 66 53 76 65 56 84 65 51 88 75 51 INFO: Distances between consecutive points are 10 9 11 INFO: Selected control points in test subject's space are 77 61 42 86 61 45 96 60 40 100 71 39 INFO: Distances between consecutive points in test subject's space are 9 11 12 WARN: Could not find satisfactory control point fit - try 61 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.132277 INFO: Points where local peaks in curvature occur are 77 69 47 (curv = 0.249918) 81 66 49 (curv = 0.236585) INFO: Intermediate dominant points are 65 66 54 77 69 47 86 69 49 96 76 51 INFO: Final dominant points are 65 66 54 77 69 47 91 74 49 96 76 51 WARN: Defaulting to equidistant control points INFO: Selected control points are 65 66 54 75 69 47 86 69 49 96 76 51 INFO: Distances between consecutive points are 13 11 12 INFO: Selected control points in test subject's space are 76 62 42 86 64 35 98 64 38 110 72 39 INFO: Distances between consecutive points in test subject's space are 12 12 14 WARN: Could not find satisfactory control point fit - try 62 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 6 INFO: Minimum allowable curvature at a dominant point is 0.107233 INFO: Points where local peaks in curvature occur are 78 64 54 (curv = 0.207397) 83 67 49 (curv = 0.19994) INFO: Intermediate dominant points are 69 68 55 78 64 54 83 67 49 89 73 49 INFO: Final dominant points are 69 68 55 78 64 54 83 67 49 89 73 49 WARN: Defaulting to equidistant control points INFO: Selected control points are 69 68 55 77 65 54 83 66 49 89 73 49 INFO: Distances between consecutive points are 9 8 9 INFO: Selected control points in test subject's space are 79 64 43 87 61 43 95 61 38 102 69 37 INFO: Distances between consecutive points in test subject's space are 9 9 11 WARN: Could not find satisfactory control point fit - try 63 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.135957 INFO: Points where local peaks in curvature occur are 71 65 50 (curv = 0.294601) 73 65 51 (curv = 0.249016) 83 64 49 (curv = 0.254206) INFO: Intermediate dominant points are 64 69 52 71 65 50 83 64 49 96 74 50 INFO: Final dominant points are 64 69 52 71 65 50 83 64 49 96 74 50 WARN: Defaulting to equidistant control points INFO: Selected control points are 64 69 52 74 65 51 85 66 49 96 74 50 INFO: Distances between consecutive points are 11 11 14 INFO: Selected control points in test subject's space are 74 64 40 84 60 40 97 61 38 110 70 38 INFO: Distances between consecutive points in test subject's space are 11 13 16 WARN: Could not find satisfactory control point fit - try 64 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.104825 INFO: Points where local peaks in curvature occur are 76 63 59 (curv = 0.317871) 85 67 49 (curv = 0.107796) INFO: Intermediate dominant points are 66 65 54 76 63 59 85 67 49 96 77 48 INFO: Final dominant points are 66 65 54 76 63 59 85 67 49 96 77 48 WARN: Defaulting to equidistant control points INFO: Selected control points are 66 65 54 78 62 56 88 72 48 96 77 48 INFO: Distances between consecutive points are 13 16 9 INFO: Selected control points in test subject's space are 77 61 43 88 58 46 101 67 36 110 73 35 INFO: Distances between consecutive points in test subject's space are 12 19 11 WARN: Could not find satisfactory control point fit - try 65 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 6 INFO: Minimum allowable curvature at a dominant point is 0.097043 INFO: Points where local peaks in curvature occur are 84 66 50 (curv = 0.124902) INFO: Intermediate dominant points are 69 63 50 84 66 50 87 70 49 93 71 52 INFO: Final dominant points are 69 63 50 84 66 50 90 73 51 93 71 52 WARN: Defaulting to equidistant control points INFO: Selected control points are 69 63 50 80 65 50 87 70 49 93 71 52 INFO: Distances between consecutive points are 11 9 7 INFO: Selected control points in test subject's space are 80 58 40 91 60 39 99 65 38 106 67 41 INFO: Distances between consecutive points in test subject's space are 11 9 8 WARN: Could not find satisfactory control point fit - try 66 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.124558 INFO: Points where local peaks in curvature occur are 73 65 50 (curv = 0.328055) 81 62 52 (curv = 0.254455) INFO: Intermediate dominant points are 68 64 48 81 62 52 89 68 50 96 70 53 INFO: Final dominant points are 68 64 48 81 62 52 92 71 50 96 70 53 WARN: Defaulting to equidistant control points INFO: Selected control points are 68 64 48 77 63 52 87 67 50 96 70 53 INFO: Distances between consecutive points are 10 11 10 INFO: Selected control points in test subject's space are 78 58 38 87 58 41 99 62 39 110 66 42 INFO: Distances between consecutive points in test subject's space are 9 13 12 WARN: Could not find satisfactory control point fit - try 67 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.0981406 INFO: Points where local peaks in curvature occur are 76 67 49 (curv = 0.161483) 81 65 50 (curv = 0.152881) 89 71 49 (curv = 0.103311) INFO: Intermediate dominant points are 68 63 50 76 67 49 89 71 49 96 77 48 INFO: Final dominant points are 68 63 50 76 67 49 89 71 49 96 77 48 WARN: Defaulting to equidistant control points INFO: Selected control points are 68 63 50 77 66 49 87 69 49 96 77 48 INFO: Distances between consecutive points are 10 10 12 INFO: Selected control points in test subject's space are 79 58 40 88 61 38 99 64 38 110 73 35 INFO: Distances between consecutive points in test subject's space are 10 11 15 WARN: Could not find satisfactory control point fit - try 68 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.120924 INFO: Points where local peaks in curvature occur are 77 63 56 (curv = 0.279518) 84 66 49 (curv = 0.318466) INFO: Intermediate dominant points are 68 69 54 77 63 56 84 66 49 92 80 48 INFO: Final dominant points are 68 69 54 77 63 56 84 66 49 92 80 48 WARN: Defaulting to equidistant control points INFO: Selected control points are 68 69 54 77 63 56 85 67 49 92 80 48 INFO: Distances between consecutive points are 11 11 15 INFO: Selected control points in test subject's space are 78 64 42 87 59 45 97 62 38 105 76 35 INFO: Distances between consecutive points in test subject's space are 11 13 16 WARN: Could not find satisfactory control point fit - try 69 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.110799 INFO: Points where local peaks in curvature occur are 76 66 51 (curv = 0.1585) 83 65 50 (curv = 0.222462) INFO: Intermediate dominant points are 67 64 48 76 66 51 83 65 50 93 73 52 INFO: Final dominant points are 67 64 48 76 66 51 83 65 50 93 73 52 WARN: Defaulting to equidistant control points INFO: Selected control points are 67 64 48 77 65 50 86 68 51 93 73 52 INFO: Distances between consecutive points are 10 10 9 INFO: Selected control points in test subject's space are 78 58 38 87 60 39 98 64 40 106 69 40 INFO: Distances between consecutive points in test subject's space are 9 12 9 WARN: Could not find satisfactory control point fit - try 70 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.146437 INFO: Points where local peaks in curvature occur are 74 68 51 (curv = 0.210016) 80 65 52 (curv = 0.319037) 83 66 50 (curv = 0.216028) 90 71 50 (curv = 0.193493) INFO: Intermediate dominant points are 66 66 54 74 68 51 80 65 52 93 74 53 INFO: Final dominant points are 66 66 54 74 68 51 80 65 52 93 74 53 WARN: Defaulting to equidistant control points INFO: Selected control points are 66 66 54 75 68 51 85 68 50 93 74 53 INFO: Distances between consecutive points are 10 10 10 INFO: Selected control points in test subject's space are 77 62 42 85 63 39 97 63 39 106 70 41 INFO: Distances between consecutive points in test subject's space are 9 12 12 WARN: Could not find satisfactory control point fit - try 71 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.103466 INFO: Points where local peaks in curvature occur are 73 64 53 (curv = 0.263442) 81 64 50 (curv = 0.17578) 85 70 45 (curv = 0.20386) INFO: Intermediate dominant points are 66 63 53 73 64 53 85 70 45 94 80 47 INFO: Final dominant points are 66 63 53 73 64 53 85 70 45 94 80 47 WARN: Defaulting to equidistant control points INFO: Selected control points are 66 63 53 77 63 51 85 70 45 94 80 47 INFO: Distances between consecutive points are 11 12 14 INFO: Selected control points in test subject's space are 77 59 42 87 58 40 97 65 34 108 76 34 INFO: Distances between consecutive points in test subject's space are 10 14 16 WARN: Could not find satisfactory control point fit - try 72 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.153619 INFO: Points where local peaks in curvature occur are 71 66 49 (curv = 0.324761) 77 65 55 (curv = 0.264657) 82 65 50 (curv = 0.16519) INFO: Intermediate dominant points are 65 66 50 77 65 55 82 65 50 87 71 50 INFO: Final dominant points are 65 66 50 77 65 55 82 65 50 87 71 50 WARN: Defaulting to equidistant control points INFO: Selected control points are 65 66 50 73 65 53 82 65 51 87 71 50 INFO: Distances between consecutive points are 9 9 8 INFO: Selected control points in test subject's space are 76 61 39 83 60 42 93 60 40 99 67 38 INFO: Distances between consecutive points in test subject's space are 8 10 9 WARN: Could not find satisfactory control point fit - try 73 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.14685 INFO: Points where local peaks in curvature occur are 75 63 59 (curv = 0.338913) 82 66 52 (curv = 0.156763) 89 74 53 (curv = 0.225486) INFO: Intermediate dominant points are 65 63 52 75 63 59 89 74 53 91 80 48 INFO: Final dominant points are 65 63 52 75 63 59 89 74 53 91 80 48 WARN: Defaulting to equidistant control points INFO: Selected control points are 65 63 52 75 63 59 86 70 52 91 80 48 INFO: Distances between consecutive points are 12 15 12 INFO: Selected control points in test subject's space are 76 58 41 85 60 48 98 66 41 104 76 35 INFO: Distances between consecutive points in test subject's space are 12 16 13 WARN: Could not find satisfactory control point fit - try 74 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.157954 INFO: Points where local peaks in curvature occur are 78 65 53 (curv = 0.404017) INFO: Intermediate dominant points are 67 63 49 78 65 53 83 66 50 91 71 50 INFO: Final dominant points are 67 63 49 78 65 53 86 69 50 91 71 50 WARN: Defaulting to equidistant control points INFO: Selected control points are 67 63 49 74 68 51 81 66 51 91 71 50 INFO: Distances between consecutive points are 9 7 11 INFO: Selected control points in test subject's space are 78 58 39 84 63 39 92 61 40 104 67 39 INFO: Distances between consecutive points in test subject's space are 8 8 13 WARN: Could not find satisfactory control point fit - try 75 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.165856 INFO: Points where local peaks in curvature occur are 73 65 52 (curv = 0.22664) 78 62 55 (curv = 0.341501) 83 64 50 (curv = 0.205632) INFO: Intermediate dominant points are 65 63 51 78 62 55 83 64 50 88 71 54 INFO: Final dominant points are 65 63 51 78 62 55 83 64 50 88 71 54 WARN: Defaulting to equidistant control points INFO: Selected control points are 65 63 51 74 64 53 81 63 51 88 71 54 INFO: Distances between consecutive points are 9 7 11 INFO: Selected control points in test subject's space are 76 58 41 84 59 42 92 58 41 100 67 43 INFO: Distances between consecutive points in test subject's space are 8 8 12 WARN: Could not find satisfactory control point fit - try 76 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.120723 INFO: Points where local peaks in curvature occur are 75 67 49 (curv = 0.244467) 80 64 50 (curv = 0.255651) 84 66 48 (curv = 0.166147) INFO: Intermediate dominant points are 66 65 47 80 64 50 86 69 49 96 73 52 INFO: Final dominant points are 66 65 47 80 64 50 91 72 50 96 73 52 WARN: Defaulting to equidistant control points INFO: Selected control points are 66 65 47 77 65 50 86 69 49 96 73 52 INFO: Distances between consecutive points are 11 10 11 INFO: Selected control points in test subject's space are 77 59 37 87 60 39 98 64 38 110 69 40 INFO: Distances between consecutive points in test subject's space are 10 12 13 WARN: Could not find satisfactory control point fit - try 77 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.167974 INFO: Points where local peaks in curvature occur are 70 66 59 (curv = 0.350122) 83 66 49 (curv = 0.284167) INFO: Intermediate dominant points are 64 67 52 70 66 59 83 66 49 89 72 52 INFO: Final dominant points are 64 67 52 70 66 59 83 66 49 89 72 52 WARN: Defaulting to equidistant control points INFO: Selected control points are 64 67 52 71 65 57 80 65 51 89 72 52 INFO: Distances between consecutive points are 9 11 11 INFO: Selected control points in test subject's space are 75 62 41 81 61 45 91 60 40 101 68 40 INFO: Distances between consecutive points in test subject's space are 7 11 13 WARN: Could not find satisfactory control point fit - try 78 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.165115 INFO: Points where local peaks in curvature occur are 71 67 48 (curv = 0.208695) 74 64 55 (curv = 0.393904) INFO: Intermediate dominant points are 65 63 48 71 67 48 74 64 55 87 72 52 INFO: Final dominant points are 65 63 48 71 67 48 74 64 55 87 72 52 WARN: Defaulting to equidistant control points INFO: Selected control points are 65 63 48 72 67 50 79 64 53 87 72 52 INFO: Distances between consecutive points are 8 8 11 INFO: Selected control points in test subject's space are 76 57 38 82 61 39 90 60 42 99 68 40 INFO: Distances between consecutive points in test subject's space are 7 9 12 WARN: Could not find satisfactory control point fit - try 79 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.156708 INFO: Points where local peaks in curvature occur are 77 68 48 (curv = 0.252447) 82 65 51 (curv = 0.322952) 86 70 52 (curv = 0.177728) INFO: Intermediate dominant points are 69 63 53 77 68 48 82 65 51 94 75 52 INFO: Final dominant points are 69 63 53 77 68 48 82 65 51 94 75 52 WARN: Defaulting to equidistant control points INFO: Selected control points are 69 63 53 77 68 48 84 68 51 94 75 52 INFO: Distances between consecutive points are 11 8 12 INFO: Selected control points in test subject's space are 80 58 42 88 63 37 96 64 40 108 71 40 INFO: Distances between consecutive points in test subject's space are 11 9 14 WARN: Could not find satisfactory control point fit - try 80 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 6 INFO: Minimum allowable curvature at a dominant point is 0.149043 INFO: Points where local peaks in curvature occur are 76 63 56 (curv = 0.534917) 83 66 50 (curv = 0.202003) INFO: Intermediate dominant points are 66 65 50 76 63 56 80 65 52 85 71 50 INFO: Final dominant points are 66 65 50 76 63 56 83 66 50 85 71 50 WARN: Defaulting to equidistant control points INFO: Selected control points are 66 65 50 74 65 54 80 65 53 85 71 50 INFO: Distances between consecutive points are 9 6 8 INFO: Selected control points in test subject's space are 77 60 39 84 60 43 91 61 42 97 67 38 INFO: Distances between consecutive points in test subject's space are 8 7 9 WARN: Could not find satisfactory control point fit - try 81 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 6 INFO: Minimum allowable curvature at a dominant point is 0.153955 INFO: Points where local peaks in curvature occur are 75 65 56 (curv = 0.24491) 82 66 50 (curv = 0.241608) INFO: Intermediate dominant points are 69 64 49 75 65 56 82 66 50 86 71 50 INFO: Final dominant points are 69 64 49 75 65 56 82 66 50 86 71 50 WARN: Defaulting to equidistant control points INFO: Selected control points are 69 64 49 74 66 55 81 65 51 86 71 50 INFO: Distances between consecutive points are 8 8 8 INFO: Selected control points in test subject's space are 79 58 39 84 62 43 92 60 40 98 67 38 INFO: Distances between consecutive points in test subject's space are 8 9 9 WARN: Could not find satisfactory control point fit - try 82 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.133289 INFO: Points where local peaks in curvature occur are 78 63 54 (curv = 0.305727) 84 66 49 (curv = 0.194658) 89 73 49 (curv = 0.178434) INFO: Intermediate dominant points are 70 62 50 78 63 54 84 66 49 94 76 52 INFO: Final dominant points are 70 62 50 78 63 54 84 66 49 94 76 52 WARN: Defaulting to equidistant control points INFO: Selected control points are 70 62 50 79 63 54 86 68 49 94 76 52 INFO: Distances between consecutive points are 10 10 12 INFO: Selected control points in test subject's space are 81 57 40 89 59 44 98 63 38 108 72 40 INFO: Distances between consecutive points in test subject's space are 9 12 14 WARN: Could not find satisfactory control point fit - try 83 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.115453 INFO: Points where local peaks in curvature occur are 79 63 56 (curv = 0.175681) 83 65 49 (curv = 0.339235) INFO: Intermediate dominant points are 65 66 56 77 63 56 83 65 49 91 76 51 INFO: Final dominant points are 65 66 56 79 64 55 83 65 49 91 76 51 WARN: Defaulting to equidistant control points INFO: Selected control points are 65 66 56 76 63 56 83 66 49 91 76 51 INFO: Distances between consecutive points are 11 10 13 INFO: Selected control points in test subject's space are 76 62 44 86 59 45 95 61 38 104 72 39 INFO: Distances between consecutive points in test subject's space are 10 12 14 WARN: Could not find satisfactory control point fit - try 84 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.113297 INFO: Points where local peaks in curvature occur are 76 66 49 (curv = 0.116242) 85 64 49 (curv = 0.25172) 89 70 49 (curv = 0.131541) INFO: Intermediate dominant points are 67 62 47 85 64 49 89 70 49 97 70 53 INFO: Final dominant points are 67 62 47 85 64 49 89 70 49 97 70 53 WARN: Defaulting to equidistant control points INFO: Selected control points are 67 62 47 78 66 49 88 69 49 97 70 53 INFO: Distances between consecutive points are 12 10 10 INFO: Selected control points in test subject's space are 78 56 37 89 61 38 101 64 38 112 66 42 INFO: Distances between consecutive points in test subject's space are 12 12 12 WARN: Could not find satisfactory control point fit - try 85 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.110132 INFO: Points where local peaks in curvature occur are 75 65 50 (curv = 0.121042) 81 62 51 (curv = 0.187841) 92 71 49 (curv = 0.183859) INFO: Intermediate dominant points are 66 63 47 81 62 51 92 71 49 97 70 52 INFO: Final dominant points are 66 63 47 81 62 51 92 71 49 97 70 52 WARN: Defaulting to equidistant control points INFO: Selected control points are 66 63 47 78 63 51 87 67 49 97 70 52 INFO: Distances between consecutive points are 13 10 11 INFO: Selected control points in test subject's space are 77 57 37 88 58 40 99 62 38 112 66 41 INFO: Distances between consecutive points in test subject's space are 11 12 14 WARN: Could not find satisfactory control point fit - try 86 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.114998 INFO: Points where local peaks in curvature occur are 82 66 51 (curv = 0.194969) 86 70 51 (curv = 0.134483) INFO: Intermediate dominant points are 68 68 55 78 65 54 82 66 51 92 73 52 INFO: Final dominant points are 68 68 55 78 65 55 82 66 51 92 73 52 WARN: Defaulting to equidistant control points INFO: Selected control points are 68 68 55 78 65 55 85 69 51 92 73 52 INFO: Distances between consecutive points are 10 9 8 INFO: Selected control points in test subject's space are 78 64 43 89 61 44 97 65 40 105 69 40 INFO: Distances between consecutive points in test subject's space are 11 10 9 WARN: Could not find satisfactory control point fit - try 87 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.113091 INFO: Points where local peaks in curvature occur are 83 65 50 (curv = 0.290357) INFO: Intermediate dominant points are 66 65 48 78 66 50 83 65 50 93 71 53 INFO: Final dominant points are 66 65 48 78 66 50 83 65 50 93 71 53 WARN: Defaulting to equidistant control points INFO: Selected control points are 66 65 48 77 66 50 85 68 51 93 71 53 INFO: Distances between consecutive points are 11 8 9 INFO: Selected control points in test subject's space are 77 59 38 88 61 39 97 64 40 106 67 42 INFO: Distances between consecutive points in test subject's space are 11 10 10 WARN: Could not find satisfactory control point fit - try 88 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.121675 INFO: Points where local peaks in curvature occur are 73 66 50 (curv = 0.171434) 76 68 49 (curv = 0.280039) 78 67 50 (curv = 0.148043) 83 65 48 (curv = 0.246816) INFO: Intermediate dominant points are 67 64 48 76 68 49 83 65 48 96 75 50 INFO: Final dominant points are 67 64 48 76 68 49 83 65 48 96 75 50 WARN: Defaulting to equidistant control points INFO: Selected control points are 67 64 48 77 68 49 87 69 48 96 75 50 INFO: Distances between consecutive points are 11 10 11 INFO: Selected control points in test subject's space are 78 58 38 88 63 38 99 64 37 110 71 38 INFO: Distances between consecutive points in test subject's space are 11 11 13 WARN: Could not find satisfactory control point fit - try 89 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.143403 INFO: Points where local peaks in curvature occur are 74 66 51 (curv = 0.349906) 81 63 49 (curv = 0.322021) INFO: Intermediate dominant points are 66 63 50 74 66 51 81 63 49 91 74 49 INFO: Final dominant points are 66 63 50 74 66 51 81 63 49 91 74 49 WARN: Defaulting to equidistant control points INFO: Selected control points are 66 63 50 74 66 51 83 66 47 91 74 49 INFO: Distances between consecutive points are 9 10 11 INFO: Selected control points in test subject's space are 77 58 40 84 61 40 95 61 36 104 70 37 INFO: Distances between consecutive points in test subject's space are 8 12 13 WARN: Could not find satisfactory control point fit - try 90 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.104965 INFO: Points where local peaks in curvature occur are 74 63 52 (curv = 0.110281) 79 63 52 (curv = 0.224747) 83 66 50 (curv = 0.226321) INFO: Intermediate dominant points are 66 66 56 74 63 52 83 66 50 90 75 51 INFO: Final dominant points are 66 66 56 74 63 52 83 66 50 90 75 51 WARN: Defaulting to equidistant control points INFO: Selected control points are 66 66 56 74 63 52 82 66 50 90 75 51 INFO: Distances between consecutive points are 9 9 12 INFO: Selected control points in test subject's space are 77 62 44 84 58 41 94 61 39 103 71 39 INFO: Distances between consecutive points in test subject's space are 9 11 13 WARN: Could not find satisfactory control point fit - try 91 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.220973 INFO: Points where local peaks in curvature occur are 77 62 56 (curv = 0.401827) 81 61 53 (curv = 0.344918) 82 66 50 (curv = 0.339485) INFO: Intermediate dominant points are 68 64 51 77 62 56 82 66 50 85 72 53 INFO: Final dominant points are 68 64 51 77 62 56 82 66 50 85 72 53 WARN: Defaulting to equidistant control points INFO: Selected control points are 68 64 51 77 63 55 81 64 52 85 72 53 INFO: Distances between consecutive points are 10 5 9 INFO: Selected control points in test subject's space are 78 59 40 87 59 44 92 59 41 97 68 41 INFO: Distances between consecutive points in test subject's space are 10 6 10 WARN: Could not find satisfactory control point fit - try 92 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 6 INFO: Minimum allowable curvature at a dominant point is 0.111232 INFO: Points where local peaks in curvature occur are 71 66 55 (curv = 0.144318) 76 65 55 (curv = 0.119853) 79 64 52 (curv = 0.123137) 84 67 48 (curv = 0.186248) INFO: Intermediate dominant points are 64 70 52 71 66 55 79 64 52 86 71 49 INFO: Final dominant points are 64 70 52 71 66 55 79 64 52 86 71 49 WARN: Defaulting to equidistant control points INFO: Selected control points are 64 70 52 73 66 55 80 65 51 86 71 49 INFO: Distances between consecutive points are 10 8 9 INFO: Selected control points in test subject's space are 74 65 40 83 62 43 91 60 40 98 66 37 INFO: Distances between consecutive points in test subject's space are 10 9 10 WARN: Could not find satisfactory control point fit - try 93 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.151484 INFO: Points where local peaks in curvature occur are 72 66 55 (curv = 0.296541) 75 62 58 (curv = 0.590931) 79 64 53 (curv = 0.152156) INFO: Intermediate dominant points are 64 68 52 75 62 58 82 67 53 96 74 51 INFO: Final dominant points are 64 68 52 75 62 58 90 69 51 96 74 51 WARN: Defaulting to equidistant control points INFO: Selected control points are 64 68 52 72 65 55 82 66 53 96 74 51 INFO: Distances between consecutive points are 9 10 16 INFO: Selected control points in test subject's space are 75 63 40 82 61 44 93 62 42 110 70 39 INFO: Distances between consecutive points in test subject's space are 8 11 19 WARN: Could not find satisfactory control point fit - try 94 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.0933019 INFO: Points where local peaks in curvature occur are 83 65 49 (curv = 0.281462) 87 70 51 (curv = 0.110407) INFO: Intermediate dominant points are 66 64 47 77 66 50 83 65 49 95 71 53 INFO: Final dominant points are 66 64 47 78 66 49 83 65 49 95 71 53 WARN: Defaulting to equidistant control points INFO: Selected control points are 66 64 47 77 66 50 86 69 50 95 71 53 INFO: Distances between consecutive points are 12 9 10 INFO: Selected control points in test subject's space are 77 58 37 88 61 39 98 64 39 109 67 42 INFO: Distances between consecutive points in test subject's space are 12 10 12 WARN: Could not find satisfactory control point fit - try 95 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.0746255 INFO: Points where local peaks in curvature occur are 84 66 49 (curv = 0.120154) 86 69 49 (curv = 0.145704) INFO: Intermediate dominant points are 67 62 47 78 65 49 86 69 49 94 80 45 INFO: Final dominant points are 67 62 47 80 66 49 86 69 49 94 80 45 WARN: Defaulting to equidistant control points INFO: Selected control points are 67 62 47 78 66 49 87 70 48 94 80 45 INFO: Distances between consecutive points are 12 10 13 INFO: Selected control points in test subject's space are 78 56 37 89 61 38 100 65 37 108 75 32 INFO: Distances between consecutive points in test subject's space are 12 12 14 WARN: Could not find satisfactory control point fit - try 96 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.182862 INFO: Points where local peaks in curvature occur are 79 71 48 (curv = 0.469876) 83 66 49 (curv = 0.449702) 91 74 50 (curv = 0.194402) INFO: Intermediate dominant points are 68 68 55 79 71 48 87 70 53 93 83 46 INFO: Final dominant points are 68 68 55 79 71 48 91 74 50 93 83 46 WARN: Defaulting to equidistant control points INFO: Selected control points are 68 68 55 78 71 47 86 69 53 93 83 46 INFO: Distances between consecutive points are 13 10 17 INFO: Selected control points in test subject's space are 78 64 43 89 66 35 98 65 42 107 78 32 INFO: Distances between consecutive points in test subject's space are 14 11 19 WARN: Could not find satisfactory control point fit - try 97 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.107196 INFO: Points where local peaks in curvature occur are 79 62 55 (curv = 0.198311) 84 65 49 (curv = 0.114079) INFO: Intermediate dominant points are 69 64 54 79 62 55 84 65 49 91 78 47 INFO: Final dominant points are 69 64 54 79 62 55 84 65 49 91 78 47 WARN: Defaulting to equidistant control points INFO: Selected control points are 69 64 54 81 62 53 86 70 45 91 78 47 INFO: Distances between consecutive points are 12 12 10 INFO: Selected control points in test subject's space are 80 60 43 92 58 43 98 65 34 104 73 34 INFO: Distances between consecutive points in test subject's space are 12 13 10 WARN: Could not find satisfactory control point fit - try 98 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.0891423 INFO: Points where local peaks in curvature occur are 73 65 50 (curv = 0.122726) 79 67 47 (curv = 0.141188) 83 66 47 (curv = 0.244056) 89 73 47 (curv = 0.0951941) INFO: Intermediate dominant points are 67 65 48 83 66 47 89 73 47 94 80 47 INFO: Final dominant points are 67 65 48 83 66 47 89 73 47 94 80 47 WARN: Defaulting to equidistant control points INFO: Selected control points are 67 65 48 78 67 48 87 70 47 94 80 47 INFO: Distances between consecutive points are 11 10 12 INFO: Selected control points in test subject's space are 77 59 38 89 62 37 100 65 36 108 76 34 INFO: Distances between consecutive points in test subject's space are 12 11 14 WARN: Could not find satisfactory control point fit - try 99 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.184793 INFO: Points where local peaks in curvature occur are 69 68 47 (curv = 0.286929) 78 64 53 (curv = 0.388129) INFO: Intermediate dominant points are 65 67 52 69 68 47 78 64 53 87 70 50 INFO: Final dominant points are 65 67 52 69 68 47 78 64 53 87 70 50 WARN: Defaulting to equidistant control points INFO: Selected control points are 65 67 52 71 68 48 79 64 53 87 70 50 INFO: Distances between consecutive points are 7 10 10 INFO: Selected control points in test subject's space are 75 62 41 81 62 37 90 60 42 99 66 39 INFO: Distances between consecutive points in test subject's space are 7 10 11 WARN: Could not find satisfactory control point fit - try 100 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.141632 INFO: Points where local peaks in curvature occur are 75 65 57 (curv = 0.215242) 78 62 56 (curv = 0.274881) INFO: Intermediate dominant points are 66 65 53 75 65 57 78 62 56 86 70 50 INFO: Final dominant points are 66 65 53 75 65 57 78 62 56 86 70 50 WARN: Defaulting to equidistant control points INFO: Selected control points are 66 65 53 74 65 57 82 62 53 86 70 50 INFO: Distances between consecutive points are 9 9 9 INFO: Selected control points in test subject's space are 77 60 42 84 61 46 93 58 43 98 66 39 INFO: Distances between consecutive points in test subject's space are 8 10 10 WARN: Could not find satisfactory control point fit - try 101 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 6 INFO: Minimum allowable curvature at a dominant point is 0.154387 INFO: Points where local peaks in curvature occur are 78 65 54 (curv = 0.192542) 82 66 51 (curv = 0.387946) INFO: Intermediate dominant points are 67 66 49 73 66 52 82 66 51 86 72 53 INFO: Final dominant points are 67 66 49 78 65 54 82 66 51 86 72 53 WARN: Defaulting to equidistant control points INFO: Selected control points are 67 66 49 73 66 52 81 66 52 86 72 53 INFO: Distances between consecutive points are 7 8 8 INFO: Selected control points in test subject's space are 77 60 38 83 61 41 92 62 41 98 68 41 INFO: Distances between consecutive points in test subject's space are 7 9 8 WARN: Could not find satisfactory control point fit - try 102 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.103404 INFO: Points where local peaks in curvature occur are 77 68 48 (curv = 0.138401) 84 66 47 (curv = 0.303103) 86 70 47 (curv = 0.108382) INFO: Intermediate dominant points are 67 65 49 84 66 47 88 71 47 95 74 52 INFO: Final dominant points are 67 65 49 84 66 47 91 73 49 95 74 52 WARN: Defaulting to equidistant control points INFO: Selected control points are 67 65 49 78 68 48 87 70 47 95 74 52 INFO: Distances between consecutive points are 11 9 10 INFO: Selected control points in test subject's space are 77 59 39 89 63 37 100 65 36 109 70 40 INFO: Distances between consecutive points in test subject's space are 13 11 11 WARN: Could not find satisfactory control point fit - try 103 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.248353 INFO: Points where local peaks in curvature occur are 78 71 46 (curv = 0.496385) 81 66 49 (curv = 0.524629) 88 75 47 (curv = 0.792498) INFO: Intermediate dominant points are 66 66 48 81 66 49 88 75 47 86 70 53 INFO: Final dominant points are 66 66 48 81 66 49 88 75 47 86 70 53 WARN: Defaulting to equidistant control points INFO: Selected control points are 66 66 48 79 71 46 86 71 47 86 70 53 INFO: Distances between consecutive points are 14 7 6 INFO: Selected control points in test subject's space are 76 60 38 90 66 34 98 66 35 98 66 42 INFO: Distances between consecutive points in test subject's space are 16 8 7 WARN: Could not find satisfactory control point fit - try 104 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 5 INFO: Minimum allowable curvature at a dominant point is 0.119249 INFO: Points where local peaks in curvature occur are 72 67 55 (curv = 0.224107) 84 67 52 (curv = 0.153067) INFO: Intermediate dominant points are 66 66 51 72 67 55 84 67 52 88 70 54 INFO: Final dominant points are 66 66 51 72 67 55 84 67 52 88 70 54 WARN: Defaulting to equidistant control points INFO: Selected control points are 66 66 51 73 67 55 81 66 53 88 70 54 INFO: Distances between consecutive points are 8 8 8 INFO: Selected control points in test subject's space are 76 61 40 83 63 43 92 62 42 100 66 43 INFO: Distances between consecutive points in test subject's space are 8 9 9 WARN: Could not find satisfactory control point fit - try 105 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.146547 INFO: Points where local peaks in curvature occur are 71 68 58 (curv = 0.189012) 78 63 58 (curv = 0.392204) INFO: Intermediate dominant points are 67 67 53 78 63 58 81 65 55 89 72 52 INFO: Final dominant points are 67 67 53 78 63 58 84 67 53 89 72 52 WARN: Defaulting to equidistant control points INFO: Selected control points are 67 67 53 74 65 58 80 65 54 89 72 52 INFO: Distances between consecutive points are 9 7 12 INFO: Selected control points in test subject's space are 77 62 41 84 61 47 91 61 43 101 68 40 INFO: Distances between consecutive points in test subject's space are 9 8 13 WARN: Could not find satisfactory control point fit - try 106 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 6 INFO: Minimum allowable curvature at a dominant point is 0.0966745 INFO: Points where local peaks in curvature occur are 82 65 52 (curv = 0.21872) INFO: Intermediate dominant points are 66 66 49 74 66 50 82 65 52 86 72 53 INFO: Final dominant points are 66 66 49 77 66 51 82 65 52 86 72 53 WARN: Defaulting to equidistant control points INFO: Selected control points are 66 66 49 73 66 50 81 65 52 86 72 53 INFO: Distances between consecutive points are 7 8 9 INFO: Selected control points in test subject's space are 76 60 38 83 61 39 92 61 41 98 68 41 INFO: Distances between consecutive points in test subject's space are 7 9 9 WARN: Could not find satisfactory control point fit - try 107 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 6 INFO: Minimum allowable curvature at a dominant point is 0.129137 INFO: Points where local peaks in curvature occur are 69 68 52 (curv = 0.203896) 77 65 54 (curv = 0.164645) INFO: Intermediate dominant points are 65 67 49 69 68 52 77 65 54 85 71 53 INFO: Final dominant points are 65 67 49 69 68 52 77 65 54 85 71 53 WARN: Defaulting to equidistant control points INFO: Selected control points are 65 67 49 70 68 53 78 64 53 85 71 53 INFO: Distances between consecutive points are 6 9 10 INFO: Selected control points in test subject's space are 75 61 38 80 63 41 88 59 42 97 67 41 INFO: Distances between consecutive points in test subject's space are 6 9 12 WARN: Could not find satisfactory control point fit - try 108 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 6 INFO: Minimum allowable curvature at a dominant point is 0.140744 INFO: Points where local peaks in curvature occur are 72 67 50 (curv = 0.24339) 77 66 54 (curv = 0.186236) 80 65 53 (curv = 0.229623) INFO: Intermediate dominant points are 63 69 52 72 67 50 80 65 53 87 70 53 INFO: Final dominant points are 63 69 52 72 67 50 80 65 53 87 70 53 WARN: Defaulting to equidistant control points INFO: Selected control points are 63 69 52 72 67 51 80 65 54 87 70 53 INFO: Distances between consecutive points are 9 9 9 INFO: Selected control points in test subject's space are 74 64 40 82 62 40 91 61 43 99 66 42 INFO: Distances between consecutive points in test subject's space are 8 10 9 WARN: Could not find satisfactory control point fit - try 109 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 6 INFO: Minimum allowable curvature at a dominant point is 0.0970552 INFO: Points where local peaks in curvature occur are 75 64 57 (curv = 0.209429) INFO: Intermediate dominant points are 65 65 52 75 64 57 79 66 53 84 68 47 INFO: Final dominant points are 65 65 52 75 64 57 81 66 50 84 68 47 WARN: Defaulting to equidistant control points INFO: Selected control points are 65 65 52 72 65 57 79 65 54 84 68 47 INFO: Distances between consecutive points are 9 8 9 INFO: Selected control points in test subject's space are 76 60 41 82 61 45 90 61 43 96 63 36 INFO: Distances between consecutive points in test subject's space are 7 8 9 WARN: Could not find satisfactory control point fit - try 110 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.134379 INFO: Points where local peaks in curvature occur are 77 61 57 (curv = 0.46803) 84 60 52 (curv = 0.139586) INFO: Intermediate dominant points are 66 67 56 77 61 57 90 63 52 95 73 51 INFO: Final dominant points are 66 67 56 77 61 57 95 66 53 95 73 51 WARN: Defaulting to equidistant control points INFO: Selected control points are 66 67 56 76 61 56 89 62 52 95 73 51 INFO: Distances between consecutive points are 12 14 13 INFO: Selected control points in test subject's space are 77 63 44 86 57 46 101 58 42 109 69 39 INFO: Distances between consecutive points in test subject's space are 11 16 14 WARN: Could not find satisfactory control point fit - try 111 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.129273 INFO: Points where local peaks in curvature occur are 76 61 57 (curv = 0.248445) 79 60 56 (curv = 0.223502) 84 62 51 (curv = 0.22202) INFO: Intermediate dominant points are 67 66 52 76 61 57 85 62 52 95 69 54 INFO: Final dominant points are 67 66 52 76 61 57 90 65 53 95 69 54 WARN: Defaulting to equidistant control points INFO: Selected control points are 67 66 52 76 61 57 85 62 52 95 69 54 INFO: Distances between consecutive points are 11 10 12 INFO: Selected control points in test subject's space are 77 61 41 86 57 47 96 57 42 109 65 43 INFO: Distances between consecutive points in test subject's space are 12 11 15 WARN: Could not find satisfactory control point fit - try 112 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.10754 INFO: Points where local peaks in curvature occur are 75 63 54 (curv = 0.178403) 78 60 55 (curv = 0.248455) INFO: Intermediate dominant points are 67 65 55 78 60 55 87 64 52 95 69 55 INFO: Final dominant points are 67 65 55 78 60 55 91 66 53 95 69 55 WARN: Defaulting to equidistant control points INFO: Selected control points are 67 65 55 76 61 55 86 63 52 95 69 55 INFO: Distances between consecutive points are 10 11 11 INFO: Selected control points in test subject's space are 78 61 43 86 57 45 97 58 42 109 65 44 INFO: Distances between consecutive points in test subject's space are 9 11 14 WARN: Could not find satisfactory control point fit - try 113 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.130611 INFO: Points where local peaks in curvature occur are 71 64 58 (curv = 0.216514) 78 62 57 (curv = 0.200713) 84 63 52 (curv = 0.216386) INFO: Intermediate dominant points are 65 66 53 71 64 58 84 63 52 91 65 54 INFO: Final dominant points are 65 66 53 71 64 58 84 63 52 91 65 54 WARN: Defaulting to equidistant control points INFO: Selected control points are 65 66 53 74 64 57 82 62 53 91 65 54 INFO: Distances between consecutive points are 10 9 10 INFO: Selected control points in test subject's space are 76 61 42 84 60 46 93 58 43 103 61 43 INFO: Distances between consecutive points in test subject's space are 9 10 10 WARN: Could not find satisfactory control point fit - try 114 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 6 INFO: Minimum allowable curvature at a dominant point is 0.148732 INFO: Points where local peaks in curvature occur are 77 65 56 (curv = 0.245143) 79 70 50 (curv = 0.261764) INFO: Intermediate dominant points are 67 65 56 77 65 56 79 70 50 84 68 47 INFO: Final dominant points are 67 65 56 77 65 56 79 70 50 84 68 47 WARN: Defaulting to equidistant control points INFO: Selected control points are 67 65 56 76 65 57 79 69 51 84 68 47 INFO: Distances between consecutive points are 9 8 6 INFO: Selected control points in test subject's space are 78 61 44 86 61 46 90 65 39 96 63 36 INFO: Distances between consecutive points in test subject's space are 8 9 7 WARN: Could not find satisfactory control point fit - try 115 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.109384 INFO: Points where local peaks in curvature occur are 72 66 48 (curv = 0.182463) 80 64 52 (curv = 0.293262) INFO: Intermediate dominant points are 66 63 49 80 64 52 88 70 49 94 80 46 INFO: Final dominant points are 66 63 49 80 64 52 91 76 48 94 80 46 WARN: Defaulting to equidistant control points INFO: Selected control points are 66 63 49 76 66 52 87 69 49 94 80 46 INFO: Distances between consecutive points are 11 12 13 INFO: Selected control points in test subject's space are 77 58 39 86 61 41 99 64 38 108 75 33 INFO: Distances between consecutive points in test subject's space are 10 14 15 WARN: Could not find satisfactory control point fit - try 116 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.130729 INFO: Points where local peaks in curvature occur are 74 65 54 (curv = 0.17915) 77 60 57 (curv = 0.635414) 84 62 51 (curv = 0.147653) INFO: Intermediate dominant points are 65 63 52 77 60 57 84 62 51 95 79 49 INFO: Final dominant points are 65 63 52 77 60 57 84 62 51 95 79 49 WARN: Defaulting to equidistant control points INFO: Selected control points are 65 63 52 77 60 57 86 67 47 95 79 49 INFO: Distances between consecutive points are 13 15 15 INFO: Selected control points in test subject's space are 76 58 41 87 56 47 98 62 36 109 75 36 INFO: Distances between consecutive points in test subject's space are 13 17 17 WARN: Could not find satisfactory control point fit - try 117 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.135223 INFO: Points where local peaks in curvature occur are 74 65 54 (curv = 0.219813) 80 63 53 (curv = 0.174249) 85 65 50 (curv = 0.20128) 88 68 51 (curv = 0.20899) INFO: Intermediate dominant points are 67 65 49 74 65 54 88 68 51 96 70 56 INFO: Final dominant points are 67 65 49 74 65 54 88 68 51 96 70 56 WARN: Defaulting to equidistant control points INFO: Selected control points are 67 65 49 78 64 53 87 67 51 96 70 56 INFO: Distances between consecutive points are 12 10 11 INFO: Selected control points in test subject's space are 77 59 39 88 59 42 99 62 40 110 67 45 INFO: Distances between consecutive points in test subject's space are 11 12 13 WARN: Could not find satisfactory control point fit - try 118 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.098327 INFO: Points where local peaks in curvature occur are 78 64 52 (curv = 0.18136) 83 66 48 (curv = 0.167209) 87 69 48 (curv = 0.143343) 88 72 46 (curv = 0.105694) INFO: Intermediate dominant points are 67 63 48 78 64 52 88 72 46 94 82 48 INFO: Final dominant points are 67 63 48 78 64 52 88 72 46 94 82 48 WARN: Defaulting to equidistant control points INFO: Selected control points are 67 63 48 80 64 51 87 71 47 94 82 48 INFO: Distances between consecutive points are 13 11 13 INFO: Selected control points in test subject's space are 78 57 38 91 59 40 99 66 35 108 78 34 INFO: Distances between consecutive points in test subject's space are 13 12 15 WARN: Could not find satisfactory control point fit - try 119 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 6 INFO: Minimum allowable curvature at a dominant point is 0.109357 INFO: Points where local peaks in curvature occur are 82 65 48 (curv = 0.19491) INFO: Intermediate dominant points are 68 64 51 78 64 51 82 65 48 91 75 49 INFO: Final dominant points are 68 64 51 78 64 51 82 65 48 91 75 49 WARN: Defaulting to equidistant control points INFO: Selected control points are 68 64 51 77 64 51 84 67 48 91 75 49 INFO: Distances between consecutive points are 9 8 11 INFO: Selected control points in test subject's space are 78 59 40 87 59 40 96 62 37 104 71 37 INFO: Distances between consecutive points in test subject's space are 9 10 12 WARN: Could not find satisfactory control point fit - try 120 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.131761 INFO: Points where local peaks in curvature occur are 75 63 51 (curv = 0.194019) 79 65 47 (curv = 0.237267) 82 64 48 (curv = 0.336881) 86 68 46 (curv = 0.14118) INFO: Intermediate dominant points are 66 67 51 75 63 51 82 64 48 92 79 47 INFO: Final dominant points are 66 67 51 75 63 51 82 64 48 92 79 47 WARN: Defaulting to equidistant control points INFO: Selected control points are 66 67 51 76 64 49 85 68 46 92 79 47 INFO: Distances between consecutive points are 11 10 13 INFO: Selected control points in test subject's space are 76 62 40 86 59 38 97 63 35 105 74 34 INFO: Distances between consecutive points in test subject's space are 11 12 14 WARN: Could not find satisfactory control point fit - try 121 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.127375 INFO: Points where local peaks in curvature occur are 73 65 58 (curv = 0.458908) 79 64 56 (curv = 0.134837) INFO: Intermediate dominant points are 68 66 51 73 65 58 79 64 56 96 75 50 INFO: Final dominant points are 68 66 51 73 65 58 79 64 56 96 75 50 WARN: Defaulting to equidistant control points INFO: Selected control points are 68 66 51 75 65 59 86 66 53 96 75 50 INFO: Distances between consecutive points are 11 13 14 INFO: Selected control points in test subject's space are 78 61 40 85 61 48 98 62 42 110 71 38 INFO: Distances between consecutive points in test subject's space are 11 14 16 WARN: Could not find satisfactory control point fit - try 122 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.172926 INFO: Points where local peaks in curvature occur are 74 66 52 (curv = 0.35303) 78 61 56 (curv = 0.40402) 84 61 53 (curv = 0.215684) INFO: Intermediate dominant points are 68 64 51 78 61 56 84 61 53 91 65 55 INFO: Final dominant points are 68 64 51 78 61 56 84 61 53 91 65 55 WARN: Defaulting to equidistant control points INFO: Selected control points are 68 64 51 76 64 54 83 61 52 91 65 55 INFO: Distances between consecutive points are 9 8 9 INFO: Selected control points in test subject's space are 78 59 40 86 59 43 94 56 42 103 61 44 INFO: Distances between consecutive points in test subject's space are 9 9 10 WARN: Could not find satisfactory control point fit - try 123 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 6 INFO: Minimum allowable curvature at a dominant point is 0.16222 INFO: Points where local peaks in curvature occur are 78 61 56 (curv = 0.324163) 84 61 52 (curv = 0.279287) INFO: Intermediate dominant points are 69 65 53 78 61 56 84 61 52 90 65 54 INFO: Final dominant points are 69 65 53 78 61 56 84 61 52 90 65 54 WARN: Defaulting to equidistant control points INFO: Selected control points are 69 65 53 77 62 56 84 61 52 90 65 54 INFO: Distances between consecutive points are 9 8 7 INFO: Selected control points in test subject's space are 79 60 42 87 58 46 95 56 42 102 61 43 INFO: Distances between consecutive points in test subject's space are 9 9 9 WARN: Could not find satisfactory control point fit - try 124 Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_* Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_cpts_4.nii.gz Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lh.ar_avg16_syn_bbr_cpts_4.nii.gz Done in 2.211 sec. Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1001/syn/rh.ar.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1006/syn/rh.ar.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1007/syn/rh.ar.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1008/syn/rh.ar.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1009/syn/rh.ar.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1010/syn/rh.ar.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1011/syn/rh.ar.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1012/syn/rh.ar.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1013/syn/rh.ar.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1015/syn/rh.ar.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1016/syn/rh.ar.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1017/syn/rh.ar.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1019/syn/rh.ar.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1021/syn/rh.ar.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1023/syn/rh.ar.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1024/syn/rh.ar.bbr.prep.trk Pre-sorted training .trk file detected INFO: Rejected 0 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Have 399 total streamlines (min/mean/max length: 33/50/77) Processing pathway 14 of 42... INFO: Have 356 non-truncated streamlines (min/mean/max length: 33/50/74) Computing path histograms INFO: Total streamline volume is 2418 voxels Finding outlier streamlines Updating streamline distance ranking INFO: Split streamlines into 13 segments Computing prior on underlying anatomy (all streamlines) Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.128217 INFO: Points where local peaks in curvature occur are 42 64 56 (curv = 0.212685) 31 68 51 (curv = 0.234517) 31 73 49 (curv = 0.243564) INFO: Intermediate dominant points are 52 65 51 42 64 56 31 73 49 24 76 48 INFO: Final dominant points are 52 65 51 42 64 56 31 73 49 24 76 48 WARN: Defaulting to equidistant control points INFO: Selected control points are 52 65 51 40 64 56 31 68 51 24 76 48 INFO: Distances between consecutive points are 13 11 11 INFO: Selected control points in test subject's space are 64 60 40 52 59 45 42 63 40 33 71 36 INFO: Distances between consecutive points in test subject's space are 13 12 13 WARN: Could not find satisfactory control point fit - try 1 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.101596 INFO: Points where local peaks in curvature occur are 47 64 54 (curv = 0.201214) 39 64 55 (curv = 0.310458) 35 66 50 (curv = 0.114309) INFO: Intermediate dominant points are 52 66 55 39 64 55 30 70 50 24 81 49 INFO: Final dominant points are 52 66 55 39 64 55 27 77 50 24 81 49 WARN: Defaulting to equidistant control points INFO: Selected control points are 52 66 55 40 64 55 30 70 50 24 81 49 INFO: Distances between consecutive points are 12 13 13 INFO: Selected control points in test subject's space are 64 62 43 52 59 44 41 65 39 33 76 36 INFO: Distances between consecutive points in test subject's space are 12 13 14 WARN: Could not find satisfactory control point fit - try 2 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.102005 INFO: Points where local peaks in curvature occur are 41 65 55 (curv = 0.169903) 37 66 52 (curv = 0.198702) INFO: Intermediate dominant points are 50 66 51 37 66 52 33 69 49 27 80 47 INFO: Final dominant points are 50 66 51 37 66 52 29 74 49 27 80 47 WARN: Defaulting to equidistant control points INFO: Selected control points are 50 66 51 41 66 54 33 69 50 27 80 47 INFO: Distances between consecutive points are 9 9 13 INFO: Selected control points in test subject's space are 63 61 40 53 61 43 44 64 39 37 75 34 INFO: Distances between consecutive points in test subject's space are 10 10 14 WARN: Could not find satisfactory control point fit - try 3 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.107688 INFO: Points where local peaks in curvature occur are 38 63 53 (curv = 0.200968) 35 66 50 (curv = 0.178879) 28 75 51 (curv = 0.28938) INFO: Intermediate dominant points are 51 65 55 38 63 53 28 75 51 25 81 47 INFO: Final dominant points are 51 65 55 38 63 53 28 75 51 25 81 47 WARN: Defaulting to equidistant control points INFO: Selected control points are 51 65 55 39 63 53 30 72 50 25 81 47 INFO: Distances between consecutive points are 12 13 11 INFO: Selected control points in test subject's space are 63 61 44 51 58 43 41 67 38 34 76 34 INFO: Distances between consecutive points in test subject's space are 12 14 12 WARN: Could not find satisfactory control point fit - try 4 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.0777136 INFO: Points where local peaks in curvature occur are 38 64 54 (curv = 0.19358) INFO: Intermediate dominant points are 50 65 50 38 64 54 30 71 50 24 79 50 INFO: Final dominant points are 50 65 50 38 64 54 27 75 50 24 79 50 WARN: Defaulting to equidistant control points INFO: Selected control points are 50 65 50 40 64 54 31 70 50 24 79 50 INFO: Distances between consecutive points are 11 12 11 INFO: Selected control points in test subject's space are 63 59 39 52 59 43 42 65 39 33 74 37 INFO: Distances between consecutive points in test subject's space are 12 12 13 WARN: Could not find satisfactory control point fit - try 5 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.124293 INFO: Points where local peaks in curvature occur are 44 66 53 (curv = 0.125323) 41 64 55 (curv = 0.375506) 38 64 53 (curv = 0.165955) INFO: Intermediate dominant points are 50 65 51 41 64 55 34 68 50 23 76 49 INFO: Final dominant points are 50 65 51 41 64 55 29 72 49 23 76 49 WARN: Defaulting to equidistant control points INFO: Selected control points are 50 65 51 41 64 55 34 68 50 23 76 49 INFO: Distances between consecutive points are 10 9 14 INFO: Selected control points in test subject's space are 63 60 40 54 59 44 45 63 39 32 71 37 INFO: Distances between consecutive points in test subject's space are 10 11 15 WARN: Could not find satisfactory control point fit - try 6 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.124402 INFO: Points where local peaks in curvature occur are 45 66 53 (curv = 0.161361) 40 63 57 (curv = 0.378606) INFO: Intermediate dominant points are 52 67 52 40 63 57 34 68 51 24 77 51 INFO: Final dominant points are 52 67 52 40 63 57 30 73 51 24 77 51 WARN: Defaulting to equidistant control points INFO: Selected control points are 52 67 52 43 64 57 34 67 52 24 77 51 INFO: Distances between consecutive points are 11 11 14 INFO: Selected control points in test subject's space are 64 62 41 56 59 46 45 62 41 33 72 39 INFO: Distances between consecutive points in test subject's space are 10 12 16 WARN: Could not find satisfactory control point fit - try 7 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.0992838 INFO: Points where local peaks in curvature occur are 41 64 56 (curv = 0.206915) 36 65 52 (curv = 0.130337) INFO: Intermediate dominant points are 51 65 52 41 64 56 36 65 52 24 77 50 INFO: Final dominant points are 51 65 52 41 64 56 36 65 52 24 77 50 WARN: Defaulting to equidistant control points INFO: Selected control points are 51 65 52 40 64 55 32 69 51 24 77 50 INFO: Distances between consecutive points are 11 10 11 INFO: Selected control points in test subject's space are 63 60 41 52 59 44 43 64 40 33 72 38 INFO: Distances between consecutive points in test subject's space are 11 11 13 WARN: Could not find satisfactory control point fit - try 8 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.105543 INFO: Points where local peaks in curvature occur are 41 64 56 (curv = 0.259218) 35 66 51 (curv = 0.183686) INFO: Intermediate dominant points are 50 66 52 41 64 56 35 66 51 25 75 48 INFO: Final dominant points are 50 66 52 41 64 56 35 66 51 25 75 48 WARN: Defaulting to equidistant control points INFO: Selected control points are 50 66 52 41 65 56 34 68 50 25 75 48 INFO: Distances between consecutive points are 10 10 12 INFO: Selected control points in test subject's space are 63 61 41 53 60 45 45 63 39 34 70 36 INFO: Distances between consecutive points in test subject's space are 11 10 13 WARN: Could not find satisfactory control point fit - try 9 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.10786 INFO: Points where local peaks in curvature occur are 41 64 55 (curv = 0.441654) 37 67 50 (curv = 0.111739) INFO: Intermediate dominant points are 50 65 50 41 64 55 37 67 50 24 79 49 INFO: Final dominant points are 50 65 50 41 64 55 37 67 50 24 79 49 WARN: Defaulting to equidistant control points INFO: Selected control points are 50 65 50 40 64 53 30 71 49 24 79 49 INFO: Distances between consecutive points are 10 13 10 INFO: Selected control points in test subject's space are 63 59 39 52 59 42 41 66 37 33 74 36 INFO: Distances between consecutive points in test subject's space are 11 14 11 WARN: Could not find satisfactory control point fit - try 10 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.0927997 INFO: Points where local peaks in curvature occur are 43 63 55 (curv = 0.341462) INFO: Intermediate dominant points are 51 66 53 43 63 55 33 69 49 25 78 47 INFO: Final dominant points are 51 66 53 43 63 55 30 73 49 25 78 47 WARN: Defaulting to equidistant control points INFO: Selected control points are 51 66 53 42 63 54 33 69 49 25 78 47 INFO: Distances between consecutive points are 10 12 12 INFO: Selected control points in test subject's space are 63 61 42 55 58 44 44 64 38 34 73 34 INFO: Distances between consecutive points in test subject's space are 9 14 14 WARN: Could not find satisfactory control point fit - try 11 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.102876 INFO: Points where local peaks in curvature occur are 42 64 54 (curv = 0.162888) 38 64 52 (curv = 0.225995) INFO: Intermediate dominant points are 52 65 52 38 64 52 33 68 50 24 75 53 INFO: Final dominant points are 52 65 52 38 64 52 28 72 50 24 75 53 WARN: Defaulting to equidistant control points INFO: Selected control points are 52 65 52 42 64 54 33 68 50 24 75 53 INFO: Distances between consecutive points are 10 11 12 INFO: Selected control points in test subject's space are 64 60 41 55 59 43 44 63 39 33 70 41 INFO: Distances between consecutive points in test subject's space are 9 12 13 WARN: Could not find satisfactory control point fit - try 12 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.0852672 INFO: Points where local peaks in curvature occur are 35 67 51 (curv = 0.128562) 30 70 50 (curv = 0.114739) 27 72 51 (curv = 0.213143) INFO: Intermediate dominant points are 51 65 52 35 67 51 27 72 51 24 76 50 INFO: Final dominant points are 51 65 52 35 67 51 27 72 51 24 76 50 WARN: Defaulting to equidistant control points INFO: Selected control points are 51 65 52 40 66 53 31 70 50 24 76 50 INFO: Distances between consecutive points are 11 10 9 INFO: Selected control points in test subject's space are 63 60 41 52 61 42 42 65 39 33 71 38 INFO: Distances between consecutive points in test subject's space are 11 11 11 WARN: Could not find satisfactory control point fit - try 13 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.104149 INFO: Points where local peaks in curvature occur are 41 63 56 (curv = 0.280645) INFO: Intermediate dominant points are 51 65 52 41 63 56 32 67 51 25 75 49 INFO: Final dominant points are 51 65 52 41 63 56 29 70 50 25 75 49 WARN: Defaulting to equidistant control points INFO: Selected control points are 51 65 52 42 63 55 34 66 51 25 75 49 INFO: Distances between consecutive points are 10 9 13 INFO: Selected control points in test subject's space are 63 60 41 55 58 45 45 61 40 34 70 37 INFO: Distances between consecutive points in test subject's space are 9 12 15 WARN: Could not find satisfactory control point fit - try 14 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.0766978 INFO: Points where local peaks in curvature occur are 39 64 53 (curv = 0.139471) 32 69 51 (curv = 0.107488) INFO: Intermediate dominant points are 51 65 53 39 64 53 32 69 51 25 75 51 INFO: Final dominant points are 51 65 53 39 64 53 32 69 51 25 75 51 WARN: Defaulting to equidistant control points INFO: Selected control points are 51 65 53 41 64 54 33 68 51 25 75 51 INFO: Distances between consecutive points are 10 9 11 INFO: Selected control points in test subject's space are 63 60 42 53 59 43 44 63 40 35 70 39 INFO: Distances between consecutive points in test subject's space are 10 10 11 WARN: Could not find satisfactory control point fit - try 15 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.111428 INFO: Points where local peaks in curvature occur are 46 64 55 (curv = 0.33696) 37 67 49 (curv = 0.147945) 33 70 47 (curv = 0.182338) INFO: Intermediate dominant points are 51 66 50 46 64 55 33 70 47 25 81 50 INFO: Final dominant points are 51 66 50 46 64 55 33 70 47 25 81 50 WARN: Defaulting to equidistant control points INFO: Selected control points are 51 66 50 41 66 53 32 71 48 25 81 50 INFO: Distances between consecutive points are 10 11 12 INFO: Selected control points in test subject's space are 64 61 39 53 61 42 43 66 36 34 76 37 INFO: Distances between consecutive points in test subject's space are 11 13 13 WARN: Could not find satisfactory control point fit - try 16 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.114575 INFO: Points where local peaks in curvature occur are 46 66 55 (curv = 0.132533) 40 64 55 (curv = 0.191558) 29 70 50 (curv = 0.270932) INFO: Intermediate dominant points are 51 67 52 40 64 55 29 70 50 24 74 53 INFO: Final dominant points are 51 67 52 40 64 55 29 70 50 24 74 53 WARN: Defaulting to equidistant control points INFO: Selected control points are 51 67 52 41 65 55 32 68 52 24 74 53 INFO: Distances between consecutive points are 11 10 10 INFO: Selected control points in test subject's space are 64 62 41 53 60 44 43 63 41 33 70 41 INFO: Distances between consecutive points in test subject's space are 12 11 12 WARN: Could not find satisfactory control point fit - try 17 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.0860836 INFO: Points where local peaks in curvature occur are 38 63 54 (curv = 0.19048) INFO: Intermediate dominant points are 51 66 53 38 63 54 31 67 52 24 76 48 INFO: Final dominant points are 51 66 53 38 63 54 27 70 51 24 76 48 WARN: Defaulting to equidistant control points INFO: Selected control points are 51 66 53 41 64 55 32 67 52 24 76 48 INFO: Distances between consecutive points are 10 10 13 INFO: Selected control points in test subject's space are 63 61 42 54 59 44 43 62 41 33 71 36 INFO: Distances between consecutive points in test subject's space are 9 12 14 WARN: Could not find satisfactory control point fit - try 18 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.117156 INFO: Points where local peaks in curvature occur are 44 65 56 (curv = 0.208679) 38 64 54 (curv = 0.181554) 29 73 51 (curv = 0.124419) INFO: Intermediate dominant points are 52 67 51 44 65 56 38 64 54 23 76 53 INFO: Final dominant points are 52 67 51 44 65 56 38 64 54 23 76 53 WARN: Defaulting to equidistant control points INFO: Selected control points are 52 67 51 42 64 56 32 69 53 23 76 53 INFO: Distances between consecutive points are 12 12 11 INFO: Selected control points in test subject's space are 65 62 40 55 59 45 43 64 42 32 72 41 INFO: Distances between consecutive points in test subject's space are 12 13 14 WARN: Could not find satisfactory control point fit - try 19 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.102963 INFO: Points where local peaks in curvature occur are 40 63 55 (curv = 0.188142) 35 64 52 (curv = 0.1217) 24 70 52 (curv = 0.247221) INFO: Intermediate dominant points are 51 67 52 40 63 55 24 70 52 25 77 48 INFO: Final dominant points are 51 67 52 40 63 55 24 70 52 25 77 48 WARN: Defaulting to equidistant control points INFO: Selected control points are 51 67 52 40 63 55 30 68 52 25 77 48 INFO: Distances between consecutive points are 12 12 11 INFO: Selected control points in test subject's space are 64 62 41 53 58 45 41 63 41 34 72 36 INFO: Distances between consecutive points in test subject's space are 12 14 12 WARN: Could not find satisfactory control point fit - try 20 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.0839921 INFO: Points where local peaks in curvature occur are 36 65 52 (curv = 0.13553) INFO: Intermediate dominant points are 51 67 53 42 65 53 36 65 52 24 75 53 INFO: Final dominant points are 51 67 53 43 66 53 36 65 52 24 75 53 WARN: Defaulting to equidistant control points INFO: Selected control points are 51 67 53 43 66 53 32 68 51 24 75 53 INFO: Distances between consecutive points are 8 11 11 INFO: Selected control points in test subject's space are 64 62 41 56 61 42 43 63 40 33 70 41 INFO: Distances between consecutive points in test subject's space are 8 13 12 WARN: Could not find satisfactory control point fit - try 21 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.112203 INFO: Points where local peaks in curvature occur are 43 66 53 (curv = 0.208813) 39 65 52 (curv = 0.20654) 34 69 48 (curv = 0.113793) INFO: Intermediate dominant points are 50 66 50 43 66 53 33 71 48 25 80 50 INFO: Final dominant points are 50 66 50 43 66 53 29 75 48 25 80 50 WARN: Defaulting to equidistant control points INFO: Selected control points are 50 66 50 40 66 52 33 71 48 25 80 50 INFO: Distances between consecutive points are 10 9 12 INFO: Selected control points in test subject's space are 63 60 39 52 61 41 44 66 36 34 75 37 INFO: Distances between consecutive points in test subject's space are 11 11 13 WARN: Could not find satisfactory control point fit - try 22 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.109798 INFO: Points where local peaks in curvature occur are 42 65 55 (curv = 0.184636) 23 74 51 (curv = 0.287399) INFO: Intermediate dominant points are 52 65 51 42 65 55 23 74 51 26 84 45 INFO: Final dominant points are 52 65 51 42 65 55 23 74 51 26 84 45 WARN: Defaulting to equidistant control points INFO: Selected control points are 52 65 51 38 64 54 25 72 51 26 84 45 INFO: Distances between consecutive points are 14 16 13 INFO: Selected control points in test subject's space are 64 60 40 50 59 43 35 67 40 36 79 32 INFO: Distances between consecutive points in test subject's space are 14 17 14 WARN: Could not find satisfactory control point fit - try 23 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.113548 INFO: Points where local peaks in curvature occur are 46 66 53 (curv = 0.14319) 44 66 53 (curv = 0.123781) 39 63 54 (curv = 0.443955) 33 67 50 (curv = 0.148453) INFO: Intermediate dominant points are 52 68 55 39 63 54 30 72 50 27 85 44 INFO: Final dominant points are 52 68 55 39 63 54 27 79 47 27 85 44 WARN: Defaulting to equidistant control points INFO: Selected control points are 52 68 55 41 64 55 30 71 50 27 85 44 INFO: Distances between consecutive points are 12 14 16 INFO: Selected control points in test subject's space are 64 64 43 54 59 44 41 66 38 37 80 31 INFO: Distances between consecutive points in test subject's space are 11 16 16 WARN: Could not find satisfactory control point fit - try 24 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.114023 INFO: Points where local peaks in curvature occur are 41 64 56 (curv = 0.385205) 37 66 52 (curv = 0.221259) INFO: Intermediate dominant points are 49 65 51 41 64 56 30 72 50 25 82 49 INFO: Final dominant points are 49 65 51 41 64 56 27 77 49 25 82 49 WARN: Defaulting to equidistant control points INFO: Selected control points are 49 65 51 39 64 55 31 71 50 25 82 49 INFO: Distances between consecutive points are 11 12 13 INFO: Selected control points in test subject's space are 62 60 40 51 59 44 42 66 38 34 77 36 INFO: Distances between consecutive points in test subject's space are 12 13 14 WARN: Could not find satisfactory control point fit - try 25 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0936407 INFO: Points where local peaks in curvature occur are 41 64 55 (curv = 0.276269) 38 66 51 (curv = 0.144517) 32 68 51 (curv = 0.125794) INFO: Intermediate dominant points are 53 65 51 41 64 55 31 70 50 26 82 46 INFO: Final dominant points are 53 65 51 41 64 55 26 74 49 26 82 46 WARN: Defaulting to equidistant control points INFO: Selected control points are 53 65 51 41 64 54 32 69 50 26 82 46 INFO: Distances between consecutive points are 12 11 15 INFO: Selected control points in test subject's space are 65 60 40 53 59 43 43 64 39 36 77 33 INFO: Distances between consecutive points in test subject's space are 12 12 16 WARN: Could not find satisfactory control point fit - try 26 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0917377 INFO: Points where local peaks in curvature occur are 41 64 56 (curv = 0.250591) 35 66 50 (curv = 0.225752) INFO: Intermediate dominant points are 52 65 52 41 64 56 35 66 50 26 83 47 INFO: Final dominant points are 52 65 52 41 64 56 35 66 50 26 83 47 WARN: Defaulting to equidistant control points INFO: Selected control points are 52 65 52 40 64 56 31 69 49 26 83 47 INFO: Distances between consecutive points are 13 12 15 INFO: Selected control points in test subject's space are 64 60 41 52 59 45 42 64 38 36 78 34 INFO: Distances between consecutive points in test subject's space are 13 13 16 WARN: Could not find satisfactory control point fit - try 27 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.108243 INFO: Points where local peaks in curvature occur are 42 65 56 (curv = 0.167646) 34 66 52 (curv = 0.111307) 32 68 52 (curv = 0.146303) 31 69 50 (curv = 0.110309) INFO: Intermediate dominant points are 52 66 53 42 65 56 32 68 52 27 84 45 INFO: Final dominant points are 52 66 53 42 65 56 32 68 52 27 84 45 WARN: Defaulting to equidistant control points INFO: Selected control points are 52 66 53 39 64 55 30 71 50 27 84 45 INFO: Distances between consecutive points are 13 12 14 INFO: Selected control points in test subject's space are 64 61 42 51 59 44 41 66 38 37 79 32 INFO: Distances between consecutive points in test subject's space are 13 14 15 WARN: Could not find satisfactory control point fit - try 28 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0931475 INFO: Points where local peaks in curvature occur are 43 64 55 (curv = 0.257353) 26 75 49 (curv = 0.108093) 25 78 49 (curv = 0.103232) INFO: Intermediate dominant points are 50 64 49 43 64 55 26 75 49 26 86 46 INFO: Final dominant points are 50 64 49 43 64 55 26 75 49 26 86 46 WARN: Defaulting to equidistant control points INFO: Selected control points are 50 64 49 39 64 54 28 73 49 26 86 46 INFO: Distances between consecutive points are 12 15 13 INFO: Selected control points in test subject's space are 62 58 39 51 59 43 38 68 37 36 81 33 INFO: Distances between consecutive points in test subject's space are 12 17 14 WARN: Could not find satisfactory control point fit - try 29 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.1127 INFO: Points where local peaks in curvature occur are 43 64 56 (curv = 0.336633) 30 69 51 (curv = 0.206455) INFO: Intermediate dominant points are 50 65 51 43 64 56 30 69 51 26 82 45 INFO: Final dominant points are 50 65 51 43 64 56 30 69 51 26 82 45 WARN: Defaulting to equidistant control points INFO: Selected control points are 50 65 51 40 64 54 29 70 50 26 82 45 INFO: Distances between consecutive points are 10 13 13 INFO: Selected control points in test subject's space are 63 60 40 52 59 43 40 65 39 36 77 32 INFO: Distances between consecutive points in test subject's space are 11 14 14 WARN: Could not find satisfactory control point fit - try 30 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0975848 INFO: Points where local peaks in curvature occur are 46 67 53 (curv = 0.183187) 41 65 55 (curv = 0.195292) 35 67 51 (curv = 0.125813) INFO: Intermediate dominant points are 51 66 53 41 65 55 35 67 51 25 82 49 INFO: Final dominant points are 51 66 53 41 65 55 35 67 51 25 82 49 WARN: Defaulting to equidistant control points INFO: Selected control points are 51 66 53 41 65 55 32 70 50 25 82 49 INFO: Distances between consecutive points are 10 11 14 INFO: Selected control points in test subject's space are 63 61 42 53 60 44 43 65 39 34 77 36 INFO: Distances between consecutive points in test subject's space are 10 12 15 WARN: Could not find satisfactory control point fit - try 31 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.110775 INFO: Points where local peaks in curvature occur are 40 64 55 (curv = 0.436212) 36 66 50 (curv = 0.196296) INFO: Intermediate dominant points are 50 65 49 40 64 55 36 66 50 23 80 48 INFO: Final dominant points are 50 65 49 40 64 55 36 66 50 23 80 48 INFO: Selected control points are 50 65 49 40 64 54 35 65 50 23 80 48 INFO: Distances between consecutive points are 11 6 19 INFO: Selected control points in test subject's space are 63 59 39 52 59 43 46 60 39 32 75 35 INFO: Distances between consecutive points in test subject's space are 12 7 21 Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_* Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_cpts_4.nii.gz Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.ar_avg16_syn_bbr_cpts_4.nii.gz Done in 1.95 sec. Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1001/syn/lh.atr.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1006/syn/lh.atr.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1007/syn/lh.atr.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1008/syn/lh.atr.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1009/syn/lh.atr.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1010/syn/lh.atr.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1011/syn/lh.atr.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1012/syn/lh.atr.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1013/syn/lh.atr.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1015/syn/lh.atr.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1016/syn/lh.atr.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1017/syn/lh.atr.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1019/syn/lh.atr.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1021/syn/lh.atr.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1023/syn/lh.atr.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1024/syn/lh.atr.bbr.prep.trk Pre-sorted training .trk file detected INFO: Rejected 5 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Have 19995 total streamlines (min/mean/max length: 36/47/60) Processing pathway 15 of 42... INFO: Have 19995 non-truncated streamlines (min/mean/max length: 36/47/60) Computing path histograms INFO: Total streamline volume is 11212 voxels Finding outlier streamlines Updating streamline distance ranking INFO: Split streamlines into 13 segments Computing prior on underlying anatomy (all streamlines) Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0853451 INFO: Points where local peaks in curvature occur are 72 110 49 (curv = 0.127143) 74 107 48 (curv = 0.278855) INFO: Intermediate dominant points are 65 119 54 74 107 48 71 91 50 63 73 53 INFO: Final dominant points are 65 119 54 74 107 48 65 82 50 63 73 53 INFO: Selected control points are 65 119 54 73 105 47 63 80 48 63 73 53 INFO: Distances between consecutive points are 18 27 9 INFO: Selected control points in test subject's space are 77 116 33 84 99 29 73 75 34 73 68 40 INFO: Distances between consecutive points in test subject's space are 19 27 9 Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_* Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_cpts_4.nii.gz Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lh.atr_avg16_syn_bbr_cpts_4.nii.gz Done in 3.822 sec. Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1001/syn/rh.atr.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1006/syn/rh.atr.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1007/syn/rh.atr.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1008/syn/rh.atr.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1009/syn/rh.atr.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1010/syn/rh.atr.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1011/syn/rh.atr.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1012/syn/rh.atr.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1013/syn/rh.atr.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1015/syn/rh.atr.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1016/syn/rh.atr.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1017/syn/rh.atr.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1019/syn/rh.atr.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1021/syn/rh.atr.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1023/syn/rh.atr.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1024/syn/rh.atr.bbr.prep.trk Pre-sorted training .trk file detected INFO: Rejected 3 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Have 19997 total streamlines (min/mean/max length: 36/47/59) Processing pathway 16 of 42... INFO: Have 19997 non-truncated streamlines (min/mean/max length: 36/47/59) Computing path histograms INFO: Total streamline volume is 11124 voxels Finding outlier streamlines Updating streamline distance ranking INFO: Split streamlines into 13 segments Computing prior on underlying anatomy (all streamlines) Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0844244 INFO: Points where local peaks in curvature occur are 44 104 49 (curv = 0.227439) 47 100 47 (curv = 0.198259) 47 94 51 (curv = 0.0885038) INFO: Intermediate dominant points are 48 120 57 44 104 49 47 93 51 55 76 52 INFO: Final dominant points are 48 120 57 44 104 49 52 85 52 55 76 52 WARN: Defaulting to equidistant control points INFO: Selected control points are 48 120 57 46 106 50 47 94 51 55 76 52 INFO: Distances between consecutive points are 16 12 20 INFO: Selected control points in test subject's space are 59 117 36 58 101 32 60 88 35 67 71 39 INFO: Distances between consecutive points in test subject's space are 17 13 19 WARN: Could not find satisfactory control point fit - try 1 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0592677 INFO: Points where local peaks in curvature occur are 44 104 49 (curv = 0.117955) 47 98 49 (curv = 0.0599116) 48 91 52 (curv = 0.0847295) INFO: Intermediate dominant points are 53 120 56 44 104 49 48 91 52 55 77 50 INFO: Final dominant points are 53 120 56 44 104 49 48 91 52 55 77 50 WARN: Defaulting to equidistant control points INFO: Selected control points are 53 120 56 47 110 51 47 93 51 55 77 50 INFO: Distances between consecutive points are 13 17 18 INFO: Selected control points in test subject's space are 64 117 35 59 105 32 60 87 36 67 72 37 INFO: Distances between consecutive points in test subject's space are 13 18 17 WARN: Could not find satisfactory control point fit - try 2 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.0737854 INFO: Points where local peaks in curvature occur are 44 103 48 (curv = 0.130093) 46 98 47 (curv = 0.140599) 47 93 51 (curv = 0.156681) INFO: Intermediate dominant points are 54 120 55 45 106 49 47 93 51 55 78 52 INFO: Final dominant points are 54 120 55 46 99 47 47 93 51 55 78 52 WARN: Defaulting to equidistant control points INFO: Selected control points are 54 120 55 46 107 49 47 94 50 55 78 52 INFO: Distances between consecutive points are 16 13 18 INFO: Selected control points in test subject's space are 65 117 34 58 101 31 60 88 34 67 73 38 INFO: Distances between consecutive points in test subject's space are 18 13 17 WARN: Could not find satisfactory control point fit - try 3 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0705231 INFO: Points where local peaks in curvature occur are 43 106 48 (curv = 0.170942) 45 99 47 (curv = 0.133365) 49 92 51 (curv = 0.080491) INFO: Intermediate dominant points are 54 119 55 43 106 48 49 92 51 56 75 51 INFO: Final dominant points are 54 119 55 43 106 48 49 92 51 56 75 51 WARN: Defaulting to equidistant control points INFO: Selected control points are 54 119 55 44 107 49 48 93 51 56 75 51 INFO: Distances between consecutive points are 17 15 20 INFO: Selected control points in test subject's space are 65 116 34 56 102 31 61 87 35 68 70 38 INFO: Distances between consecutive points in test subject's space are 17 16 19 WARN: Could not find satisfactory control point fit - try 4 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.0626919 INFO: Points where local peaks in curvature occur are 44 105 49 (curv = 0.151816) 46 98 48 (curv = 0.067463) 46 93 50 (curv = 0.0916713) INFO: Intermediate dominant points are 53 118 53 44 105 49 46 93 50 56 75 53 INFO: Final dominant points are 53 118 53 44 105 49 46 93 50 56 75 53 WARN: Defaulting to equidistant control points INFO: Selected control points are 53 118 53 44 105 49 48 91 50 56 75 53 INFO: Distances between consecutive points are 16 15 18 INFO: Selected control points in test subject's space are 64 114 33 57 100 32 61 85 35 68 70 40 INFO: Distances between consecutive points in test subject's space are 16 16 17 WARN: Could not find satisfactory control point fit - try 5 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.111333 INFO: Points where local peaks in curvature occur are 43 104 49 (curv = 0.349673) 47 99 48 (curv = 0.212736) 47 95 52 (curv = 0.139585) INFO: Intermediate dominant points are 48 120 56 43 104 49 47 94 52 55 78 52 INFO: Final dominant points are 48 120 56 43 104 49 51 86 52 55 78 52 WARN: Defaulting to equidistant control points INFO: Selected control points are 48 120 56 44 106 51 47 94 52 55 78 52 INFO: Distances between consecutive points are 15 12 18 INFO: Selected control points in test subject's space are 59 117 35 57 101 33 60 89 36 67 73 38 INFO: Distances between consecutive points in test subject's space are 16 13 18 WARN: Could not find satisfactory control point fit - try 6 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0580454 INFO: Points where local peaks in curvature occur are 44 105 48 (curv = 0.189845) 46 95 49 (curv = 0.0663366) 53 85 51 (curv = 0.0873536) INFO: Intermediate dominant points are 48 120 53 44 105 48 53 85 51 55 75 54 INFO: Final dominant points are 48 120 53 44 105 48 53 85 51 55 75 54 WARN: Defaulting to equidistant control points INFO: Selected control points are 48 120 53 44 107 48 50 90 51 55 75 54 INFO: Distances between consecutive points are 14 18 16 INFO: Selected control points in test subject's space are 60 116 32 56 101 30 62 85 36 67 70 40 INFO: Distances between consecutive points in test subject's space are 16 18 16 WARN: Could not find satisfactory control point fit - try 7 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0536315 INFO: Points where local peaks in curvature occur are 50 113 54 (curv = 0.0664336) 45 106 50 (curv = 0.117105) 46 97 48 (curv = 0.0891445) 48 92 50 (curv = 0.0771747) INFO: Intermediate dominant points are 53 120 57 45 106 50 48 92 50 56 74 53 INFO: Final dominant points are 53 120 57 45 106 50 48 92 50 56 74 53 WARN: Defaulting to equidistant control points INFO: Selected control points are 53 120 57 47 108 52 47 93 49 56 74 53 INFO: Distances between consecutive points are 14 15 21 INFO: Selected control points in test subject's space are 64 117 36 59 103 34 60 87 34 68 69 40 INFO: Distances between consecutive points in test subject's space are 15 16 21 WARN: Could not find satisfactory control point fit - try 8 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.0646083 INFO: Points where local peaks in curvature occur are 44 105 49 (curv = 0.203855) INFO: Intermediate dominant points are 47 120 54 44 105 49 48 91 50 55 76 52 INFO: Final dominant points are 47 120 54 44 105 49 53 84 51 55 76 52 WARN: Defaulting to equidistant control points INFO: Selected control points are 47 120 54 46 107 50 48 91 50 55 76 52 INFO: Distances between consecutive points are 14 16 17 INFO: Selected control points in test subject's space are 59 116 33 58 102 32 61 85 35 67 71 39 INFO: Distances between consecutive points in test subject's space are 14 18 16 WARN: Could not find satisfactory control point fit - try 9 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.0763792 INFO: Points where local peaks in curvature occur are 48 114 53 (curv = 0.194538) 43 104 49 (curv = 0.260634) INFO: Intermediate dominant points are 46 120 47 43 104 49 49 91 50 56 75 50 INFO: Final dominant points are 46 120 47 43 104 49 53 84 50 56 75 50 WARN: Defaulting to equidistant control points INFO: Selected control points are 46 120 47 45 106 51 49 91 50 56 75 50 INFO: Distances between consecutive points are 15 16 17 INFO: Selected control points in test subject's space are 58 115 27 57 101 33 61 85 35 68 70 37 INFO: Distances between consecutive points in test subject's space are 15 17 17 WARN: Could not find satisfactory control point fit - try 10 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.0609991 INFO: Points where local peaks in curvature occur are 44 103 49 (curv = 0.184043) 47 92 52 (curv = 0.0810024) INFO: Intermediate dominant points are 54 120 54 44 103 49 48 90 53 56 74 53 INFO: Final dominant points are 54 120 54 44 103 49 53 81 52 56 74 53 WARN: Defaulting to equidistant control points INFO: Selected control points are 54 120 54 44 106 49 48 90 53 56 74 53 INFO: Distances between consecutive points are 18 17 18 INFO: Selected control points in test subject's space are 65 117 33 57 101 32 60 85 38 68 69 40 INFO: Distances between consecutive points in test subject's space are 18 17 18 WARN: Could not find satisfactory control point fit - try 11 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.053341 INFO: Points where local peaks in curvature occur are 44 107 49 (curv = 0.142923) 46 96 48 (curv = 0.0856066) INFO: Intermediate dominant points are 47 118 54 44 107 49 46 96 48 56 74 54 INFO: Final dominant points are 47 118 54 44 107 49 46 96 48 56 74 54 INFO: Selected control points are 47 118 54 45 105 48 46 94 48 56 74 54 INFO: Distances between consecutive points are 14 11 23 INFO: Selected control points in test subject's space are 59 114 34 58 99 31 59 88 33 68 69 40 INFO: Distances between consecutive points in test subject's space are 15 11 22 Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_* Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_cpts_4.nii.gz Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.atr_avg16_syn_bbr_cpts_4.nii.gz Done in 6.406 sec. Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1001/syn/lh.cbd.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1006/syn/lh.cbd.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1007/syn/lh.cbd.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1008/syn/lh.cbd.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1009/syn/lh.cbd.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1010/syn/lh.cbd.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1011/syn/lh.cbd.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1012/syn/lh.cbd.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1013/syn/lh.cbd.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1015/syn/lh.cbd.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1016/syn/lh.cbd.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1017/syn/lh.cbd.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1019/syn/lh.cbd.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1021/syn/lh.cbd.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1023/syn/lh.cbd.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1024/syn/lh.cbd.bbr.prep.trk Pre-sorted training .trk file detected INFO: Rejected 0 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Have 20000 total streamlines (min/mean/max length: 27/78/128) Processing pathway 17 of 42... INFO: Have 20000 non-truncated streamlines (min/mean/max length: 27/78/128) Computing path histograms INFO: Total streamline volume is 14061 voxels Finding outlier streamlines Updating streamline distance ranking INFO: Split streamlines into 16 segments Computing prior on underlying anatomy (all streamlines) Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.0647183 INFO: Points where local peaks in curvature occur are 68 105 55 (curv = 0.243696) 65 85 68 (curv = 0.117961) 68 57 67 (curv = 0.105216) 68 50 66 (curv = 0.145) INFO: Intermediate dominant points are 66 111 59 68 105 55 66 92 64 65 85 68 65 67 68 68 50 66 65 46 67 INFO: Final dominant points are 66 111 59 68 105 55 65 90 65 65 85 68 68 57 67 68 50 66 65 46 67 INFO: Selected control points are 66 111 59 68 105 56 65 90 65 64 84 68 67 58 67 68 51 66 65 46 67 INFO: Distances between consecutive points are 7 18 7 26 7 6 INFO: Selected control points in test subject's space are 78 108 40 79 101 38 77 87 49 76 82 53 78 56 57 80 48 57 77 42 58 INFO: Distances between consecutive points in test subject's space are 7 18 6 26 8 7 Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_* Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_cpts_7.nii.gz Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lh.cbd_avg16_syn_bbr_cpts_7.nii.gz Done in 5.111 sec. Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1001/syn/rh.cbd.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1006/syn/rh.cbd.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1007/syn/rh.cbd.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1008/syn/rh.cbd.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1009/syn/rh.cbd.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1010/syn/rh.cbd.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1011/syn/rh.cbd.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1012/syn/rh.cbd.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1013/syn/rh.cbd.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1015/syn/rh.cbd.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1016/syn/rh.cbd.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1017/syn/rh.cbd.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1019/syn/rh.cbd.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1021/syn/rh.cbd.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1023/syn/rh.cbd.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1024/syn/rh.cbd.bbr.prep.trk Pre-sorted training .trk file detected INFO: Rejected 0 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Have 20000 total streamlines (min/mean/max length: 30/79/128) Processing pathway 18 of 42... INFO: Have 20000 non-truncated streamlines (min/mean/max length: 30/79/128) Computing path histograms INFO: Total streamline volume is 14383 voxels Finding outlier streamlines Updating streamline distance ranking INFO: Split streamlines into 17 segments Computing prior on underlying anatomy (all streamlines) Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.0824197 INFO: Points where local peaks in curvature occur are 49 106 58 (curv = 0.301148) 50 52 65 (curv = 0.228577) 50 51 68 (curv = 0.310271) INFO: Intermediate dominant points are 55 108 61 49 106 58 53 91 64 54 79 68 54 65 69 50 51 68 56 46 68 INFO: Final dominant points are 55 108 61 49 106 58 54 86 66 54 72 68 51 56 65 50 51 68 56 46 68 INFO: Selected control points are 55 108 61 49 105 58 54 87 66 54 72 69 52 56 66 50 51 67 56 46 68 INFO: Distances between consecutive points are 7 20 15 16 5 8 INFO: Selected control points in test subject's space are 66 105 42 61 101 40 66 84 50 66 70 55 64 53 57 62 48 59 68 43 60 INFO: Distances between consecutive points in test subject's space are 7 20 15 17 6 8 Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_* Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_cpts_7.nii.gz Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.cbd_avg16_syn_bbr_cpts_7.nii.gz Done in 5.136 sec. Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1001/syn/lh.cbv.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1006/syn/lh.cbv.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1007/syn/lh.cbv.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1008/syn/lh.cbv.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1009/syn/lh.cbv.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1010/syn/lh.cbv.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1011/syn/lh.cbv.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1012/syn/lh.cbv.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1013/syn/lh.cbv.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1015/syn/lh.cbv.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1016/syn/lh.cbv.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1017/syn/lh.cbv.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1019/syn/lh.cbv.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1021/syn/lh.cbv.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1023/syn/lh.cbv.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1024/syn/lh.cbv.bbr.prep.trk Pre-sorted training .trk file detected INFO: Rejected 0 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Have 1897 total streamlines (min/mean/max length: 30/59/89) Processing pathway 19 of 42... INFO: Have 1655 non-truncated streamlines (min/mean/max length: 32/59/89) Computing path histograms INFO: Total streamline volume is 5826 voxels Finding outlier streamlines Updating streamline distance ranking INFO: Split streamlines into 14 segments Computing prior on underlying anatomy (all streamlines) Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.1121 INFO: Points where local peaks in curvature occur are 68 45 70 (curv = 0.145021) 72 48 66 (curv = 0.152888) 73 49 63 (curv = 0.285291) 68 51 59 (curv = 0.168501) INFO: Intermediate dominant points are 63 37 70 73 49 63 68 51 59 71 55 49 73 64 39 INFO: Final dominant points are 63 37 70 73 49 63 68 51 59 71 59 44 73 64 39 INFO: Selected control points are 63 37 70 74 51 64 68 50 58 72 59 44 73 64 39 INFO: Distances between consecutive points are 19 9 17 7 INFO: Selected control points in test subject's space are 75 33 63 85 48 56 79 45 50 84 53 35 85 57 29 INFO: Distances between consecutive points in test subject's space are 19 9 18 7 Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_* Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_cpts_5.nii.gz Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lh.cbv_avg16_syn_bbr_cpts_5.nii.gz Done in 2.559 sec. Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1001/syn/rh.cbv.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1006/syn/rh.cbv.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1007/syn/rh.cbv.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1008/syn/rh.cbv.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1009/syn/rh.cbv.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1010/syn/rh.cbv.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1011/syn/rh.cbv.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1012/syn/rh.cbv.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1013/syn/rh.cbv.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1015/syn/rh.cbv.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1016/syn/rh.cbv.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1017/syn/rh.cbv.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1019/syn/rh.cbv.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1021/syn/rh.cbv.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1023/syn/rh.cbv.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1024/syn/rh.cbv.bbr.prep.trk Pre-sorted training .trk file detected INFO: Rejected 0 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Have 3039 total streamlines (min/mean/max length: 39/60/89) Processing pathway 20 of 42... INFO: Have 2324 non-truncated streamlines (min/mean/max length: 39/61/89) Computing path histograms INFO: Total streamline volume is 6320 voxels Finding outlier streamlines Updating streamline distance ranking INFO: Split streamlines into 16 segments Computing prior on underlying anatomy (all streamlines) Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0925628 INFO: Points where local peaks in curvature occur are 47 52 63 (curv = 0.203612) 52 53 59 (curv = 0.378378) 51 55 53 (curv = 0.092743) 45 64 39 (curv = 0.130034) INFO: Intermediate dominant points are 53 41 73 48 50 65 52 53 59 45 64 39 41 68 36 INFO: Final dominant points are 53 41 73 47 52 63 52 53 59 45 64 39 41 68 36 INFO: Selected control points are 53 41 73 47 53 64 51 53 58 45 63 40 41 68 36 INFO: Distances between consecutive points are 16 7 21 8 INFO: Selected control points in test subject's space are 65 38 65 60 49 56 63 49 50 56 57 30 52 61 24 INFO: Distances between consecutive points in test subject's space are 15 7 23 8 Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_* Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_cpts_5.nii.gz Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.cbv_avg16_syn_bbr_cpts_5.nii.gz Done in 2.495 sec. Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1001/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1006/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1007/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1008/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1009/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1010/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1011/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1012/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1013/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1015/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1016/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1017/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1019/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1021/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1023/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1024/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected INFO: Rejected 0 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Have 18655 total streamlines (min/mean/max length: 58/80/94) Processing pathway 21 of 42... INFO: Have 17044 non-truncated streamlines (min/mean/max length: 58/79/94) Computing path histograms INFO: Total streamline volume is 15257 voxels Finding outlier streamlines Updating streamline distance ranking INFO: Split streamlines into 23 segments Computing prior on underlying anatomy (all streamlines) Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.0608141 INFO: Points where local peaks in curvature occur are 71 75 77 (curv = 0.163886) 76 76 67 (curv = 0.141413) 73 74 56 (curv = 0.0656984) 69 73 43 (curv = 0.0754731) 64 68 35 (curv = 0.0611023) 63 67 30 (curv = 0.0687847) INFO: Intermediate dominant points are 70 84 82 71 75 77 76 76 67 73 74 56 69 73 43 63 67 30 59 55 10 INFO: Final dominant points are 70 84 82 71 75 77 76 76 67 73 74 56 69 73 43 63 67 30 59 55 10 INFO: Selected control points are 70 84 82 70 76 76 76 76 67 73 74 56 68 72 43 63 67 31 59 55 10 INFO: Distances between consecutive points are 10 11 12 14 14 25 INFO: Selected control points in test subject's space are 83 84 66 82 75 61 87 74 53 83 70 43 78 66 32 74 59 21 71 46 3 INFO: Distances between consecutive points in test subject's space are 10 9 11 13 14 22 Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_* Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_cpts_7.nii.gz Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lh.cst_avg16_syn_bbr_cpts_7.nii.gz Done in 4.916 sec. Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1001/syn/rh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1006/syn/rh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1007/syn/rh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1008/syn/rh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1009/syn/rh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1010/syn/rh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1011/syn/rh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1012/syn/rh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1013/syn/rh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1015/syn/rh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1016/syn/rh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1017/syn/rh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1019/syn/rh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1021/syn/rh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1023/syn/rh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1024/syn/rh.cst.bbr.prep.trk Pre-sorted training .trk file detected INFO: Rejected 1 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Have 14468 total streamlines (min/mean/max length: 64/80/97) Processing pathway 22 of 42... INFO: Have 13054 non-truncated streamlines (min/mean/max length: 64/79/97) Computing path histograms INFO: Total streamline volume is 13429 voxels Finding outlier streamlines Updating streamline distance ranking INFO: Split streamlines into 23 segments Computing prior on underlying anatomy (all streamlines) Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.0382041 INFO: Points where local peaks in curvature occur are 49 72 79 (curv = 0.0550884) 45 73 66 (curv = 0.106965) 46 72 62 (curv = 0.0882371) 45 73 56 (curv = 0.0686486) 48 72 43 (curv = 0.0500549) 56 67 29 (curv = 0.0592745) 58 58 16 (curv = 0.0754207) INFO: Intermediate dominant points are 49 71 87 49 72 79 45 73 66 45 73 56 56 67 29 58 58 16 57 55 9 INFO: Final dominant points are 49 71 87 49 72 79 45 73 66 45 73 56 56 67 29 58 58 16 57 55 9 INFO: Selected control points are 49 71 87 49 72 78 46 73 66 45 73 55 55 67 30 58 58 17 57 55 9 INFO: Distances between consecutive points are 9 12 11 28 16 9 INFO: Selected control points in test subject's space are 61 71 73 61 70 64 58 70 52 57 69 42 67 59 19 70 48 8 69 45 3 INFO: Distances between consecutive points in test subject's space are 9 12 10 27 16 6 Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_* Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_cpts_7.nii.gz Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.cst_avg16_syn_bbr_cpts_7.nii.gz Done in 4.388 sec. Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1001/syn/lh.emc.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1006/syn/lh.emc.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1007/syn/lh.emc.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1008/syn/lh.emc.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1009/syn/lh.emc.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1010/syn/lh.emc.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1011/syn/lh.emc.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1012/syn/lh.emc.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1013/syn/lh.emc.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1015/syn/lh.emc.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1016/syn/lh.emc.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1017/syn/lh.emc.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1019/syn/lh.emc.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1021/syn/lh.emc.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1023/syn/lh.emc.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1024/syn/lh.emc.bbr.prep.trk Pre-sorted training .trk file detected INFO: Rejected 0 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Have 3255 total streamlines (min/mean/max length: 41/76/106) Processing pathway 23 of 42... INFO: Have 3182 non-truncated streamlines (min/mean/max length: 41/76/106) Computing path histograms INFO: Total streamline volume is 8512 voxels Finding outlier streamlines Updating streamline distance ranking INFO: Split streamlines into 19 segments Computing prior on underlying anatomy (all streamlines) Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.0973449 INFO: Points where local peaks in curvature occur are 76 105 46 (curv = 0.207018) 72 97 47 (curv = 0.173591) 81 77 40 (curv = 0.142799) 84 75 38 (curv = 0.1167) 87 72 38 (curv = 0.105956) INFO: Intermediate dominant points are 83 107 41 76 105 46 73 96 46 77 88 43 81 77 40 87 72 38 91 66 41 INFO: Final dominant points are 83 107 41 76 105 46 74 93 45 78 82 42 81 77 40 87 72 38 91 66 41 INFO: Selected control points are 83 107 41 76 105 47 74 93 45 79 83 42 81 77 40 87 72 38 91 66 41 INFO: Distances between consecutive points are 9 12 12 7 8 8 INFO: Selected control points in test subject's space are 95 100 21 87 99 29 84 86 30 90 77 29 92 71 28 99 66 26 104 60 30 INFO: Distances between consecutive points in test subject's space are 11 13 11 6 9 9 Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_* Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_cpts_7.nii.gz Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lh.emc_avg16_syn_bbr_cpts_7.nii.gz Done in 2.27 sec. Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1001/syn/rh.emc.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1006/syn/rh.emc.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1007/syn/rh.emc.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1008/syn/rh.emc.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1009/syn/rh.emc.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1010/syn/rh.emc.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1011/syn/rh.emc.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1012/syn/rh.emc.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1013/syn/rh.emc.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1015/syn/rh.emc.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1016/syn/rh.emc.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1017/syn/rh.emc.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1019/syn/rh.emc.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1021/syn/rh.emc.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1023/syn/rh.emc.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1024/syn/rh.emc.bbr.prep.trk Pre-sorted training .trk file detected INFO: Rejected 1 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Have 3725 total streamlines (min/mean/max length: 53/78/103) Processing pathway 24 of 42... INFO: Have 3650 non-truncated streamlines (min/mean/max length: 53/78/103) Computing path histograms INFO: Total streamline volume is 8408 voxels Finding outlier streamlines Updating streamline distance ranking INFO: Split streamlines into 20 segments Computing prior on underlying anatomy (all streamlines) Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.132132 INFO: Points where local peaks in curvature occur are 38 104 47 (curv = 0.291422) 44 100 46 (curv = 0.219288) 33 70 40 (curv = 0.154922) 30 66 41 (curv = 0.158471) 26 64 41 (curv = 0.196981) 21 67 42 (curv = 0.516116) INFO: Intermediate dominant points are 33 101 41 38 104 47 44 100 46 39 80 43 33 70 40 21 67 42 24 72 38 INFO: Final dominant points are 33 101 41 38 104 47 44 100 46 37 75 42 26 64 41 21 67 42 24 72 38 INFO: Selected control points are 33 101 41 38 104 47 44 100 46 37 76 42 27 65 41 21 67 42 24 72 38 INFO: Distances between consecutive points are 8 7 25 15 6 7 INFO: Selected control points in test subject's space are 44 95 23 50 99 30 57 94 30 49 70 30 37 59 31 30 61 32 34 65 27 INFO: Distances between consecutive points in test subject's space are 10 9 25 16 7 8 Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_* Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_cpts_7.nii.gz Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.emc_avg16_syn_bbr_cpts_7.nii.gz Done in 2.425 sec. Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1001/syn/lh.fat.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1006/syn/lh.fat.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1007/syn/lh.fat.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1008/syn/lh.fat.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1009/syn/lh.fat.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1010/syn/lh.fat.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1011/syn/lh.fat.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1012/syn/lh.fat.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1013/syn/lh.fat.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1015/syn/lh.fat.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1016/syn/lh.fat.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1017/syn/lh.fat.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1019/syn/lh.fat.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1021/syn/lh.fat.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1023/syn/lh.fat.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1024/syn/lh.fat.bbr.prep.trk Pre-sorted training .trk file detected INFO: Rejected 0 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Have 20000 total streamlines (min/mean/max length: 27/52/74) Processing pathway 25 of 42... INFO: Have 20000 non-truncated streamlines (min/mean/max length: 27/52/74) Computing path histograms INFO: Total streamline volume is 12130 voxels Finding outlier streamlines Updating streamline distance ranking INFO: Split streamlines into 13 segments Computing prior on underlying anatomy (all streamlines) Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.106989 INFO: Points where local peaks in curvature occur are 76 88 63 (curv = 0.203249) 86 92 57 (curv = 0.441593) INFO: Intermediate dominant points are 67 93 84 70 90 73 76 88 63 86 92 57 89 88 52 INFO: Final dominant points are 67 93 84 74 89 68 76 88 63 86 92 57 89 88 52 INFO: Selected control points are 67 93 84 73 89 67 76 88 63 86 91 57 89 88 52 INFO: Distances between consecutive points are 18 5 12 7 INFO: Selected control points in test subject's space are 80 93 68 84 86 51 86 84 48 97 87 42 101 84 38 INFO: Distances between consecutive points in test subject's space are 19 4 13 6 Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_* Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_cpts_5.nii.gz Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lh.fat_avg16_syn_bbr_cpts_5.nii.gz Done in 3.932 sec. Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1001/syn/rh.fat.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1006/syn/rh.fat.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1007/syn/rh.fat.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1008/syn/rh.fat.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1009/syn/rh.fat.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1010/syn/rh.fat.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1011/syn/rh.fat.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1012/syn/rh.fat.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1013/syn/rh.fat.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1015/syn/rh.fat.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1016/syn/rh.fat.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1017/syn/rh.fat.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1019/syn/rh.fat.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1021/syn/rh.fat.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1023/syn/rh.fat.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1024/syn/rh.fat.bbr.prep.trk Pre-sorted training .trk file detected INFO: Rejected 0 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Have 20000 total streamlines (min/mean/max length: 28/52/74) Processing pathway 26 of 42... INFO: Have 20000 non-truncated streamlines (min/mean/max length: 28/52/74) Computing path histograms INFO: Total streamline volume is 12447 voxels Finding outlier streamlines Updating streamline distance ranking INFO: Split streamlines into 13 segments Computing prior on underlying anatomy (all streamlines) Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.0655675 INFO: Points where local peaks in curvature occur are 48 89 70 (curv = 0.115155) 42 88 62 (curv = 0.187081) INFO: Intermediate dominant points are 52 91 82 48 89 70 42 88 62 37 90 59 29 89 54 INFO: Final dominant points are 52 91 82 48 89 70 42 88 62 34 90 57 29 89 54 INFO: Selected control points are 52 91 82 48 90 69 42 88 62 34 91 57 29 89 54 INFO: Distances between consecutive points are 14 9 10 6 INFO: Selected control points in test subject's space are 63 90 65 60 87 53 54 84 47 46 87 43 40 85 41 INFO: Distances between consecutive points in test subject's space are 13 9 9 7 Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_* Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_cpts_5.nii.gz Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.fat_avg16_syn_bbr_cpts_5.nii.gz Done in 4.03 sec. Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1001/syn/lh.fx.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1006/syn/lh.fx.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1007/syn/lh.fx.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1008/syn/lh.fx.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1009/syn/lh.fx.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1010/syn/lh.fx.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1011/syn/lh.fx.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1012/syn/lh.fx.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1013/syn/lh.fx.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1015/syn/lh.fx.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1016/syn/lh.fx.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1017/syn/lh.fx.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1019/syn/lh.fx.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1021/syn/lh.fx.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1023/syn/lh.fx.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1024/syn/lh.fx.bbr.prep.trk Pre-sorted training .trk file detected INFO: Rejected 7 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Have 2458 total streamlines (min/mean/max length: 73/99/127) Processing pathway 27 of 42... INFO: Have 1229 non-truncated streamlines (min/mean/max length: 79/100/127) Computing path histograms INFO: Total streamline volume is 5248 voxels Finding outlier streamlines Updating streamline distance ranking INFO: Split streamlines into 29 segments Computing prior on underlying anatomy (all streamlines) Selecting 9 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.0939701 INFO: Points where local peaks in curvature occur are 60 74 59 (curv = 0.14794) 63 67 59 (curv = 0.134195) 67 63 56 (curv = 0.129177) 71 61 54 (curv = 0.110826) 78 63 47 (curv = 0.26909) 77 69 45 (curv = 0.0956317) 82 77 37 (curv = 0.114914) INFO: Intermediate dominant points are 61 83 46 61 79 56 60 74 59 63 67 59 67 63 56 78 63 47 77 69 45 82 77 37 79 83 26 INFO: Final dominant points are 61 83 46 61 78 56 60 74 59 63 67 59 67 63 56 78 63 47 77 69 45 82 77 37 79 83 26 INFO: Selected control points are 61 83 46 61 79 57 60 74 59 63 67 58 68 62 57 78 63 47 77 69 45 81 78 37 79 83 26 INFO: Distances between consecutive points are 12 5 8 7 14 6 13 12 INFO: Selected control points in test subject's space are 72 78 32 72 76 42 71 71 45 74 64 45 79 59 46 89 58 37 88 64 34 92 71 24 91 74 11 INFO: Distances between consecutive points in test subject's space are 10 6 8 7 13 7 13 13 Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_* Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_cpts_9.nii.gz Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lh.fx_avg16_syn_bbr_cpts_9.nii.gz Done in 2.657 sec. Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1001/syn/rh.fx.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1006/syn/rh.fx.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1007/syn/rh.fx.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1008/syn/rh.fx.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1009/syn/rh.fx.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1010/syn/rh.fx.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1011/syn/rh.fx.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1012/syn/rh.fx.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1013/syn/rh.fx.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1015/syn/rh.fx.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1016/syn/rh.fx.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1017/syn/rh.fx.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1019/syn/rh.fx.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1021/syn/rh.fx.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1023/syn/rh.fx.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1024/syn/rh.fx.bbr.prep.trk Pre-sorted training .trk file detected INFO: Rejected 0 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Have 2309 total streamlines (min/mean/max length: 73/98/126) Processing pathway 28 of 42... INFO: Have 1103 non-truncated streamlines (min/mean/max length: 76/101/126) Computing path histograms INFO: Total streamline volume is 4970 voxels Finding outlier streamlines Updating streamline distance ranking INFO: Split streamlines into 29 segments Computing prior on underlying anatomy (all streamlines) Selecting 9 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.0822116 INFO: Points where local peaks in curvature occur are 58 86 46 (curv = 0.223098) 58 81 56 (curv = 0.0968239) 57 77 59 (curv = 0.0869366) 56 70 60 (curv = 0.116944) 54 66 58 (curv = 0.112251) 44 61 53 (curv = 0.160257) 41 61 49 (curv = 0.150229) 39 68 44 (curv = 0.0856788) 40 73 41 (curv = 0.083317) 37 78 33 (curv = 0.127035) INFO: Intermediate dominant points are 56 83 41 58 86 46 58 81 56 56 70 60 49 63 56 44 61 53 40 73 41 37 78 33 41 83 28 INFO: Final dominant points are 56 83 41 58 86 46 58 81 56 56 70 60 48 63 55 44 61 53 40 73 41 37 78 33 41 83 28 INFO: Selected control points are 56 83 41 58 85 47 58 81 57 56 70 60 49 63 55 43 60 52 39 72 41 37 79 33 41 83 28 INFO: Distances between consecutive points are 7 11 12 11 7 17 11 8 INFO: Selected control points in test subject's space are 68 77 28 69 80 32 70 78 42 68 67 47 61 59 44 55 55 42 51 66 29 49 72 20 53 74 13 INFO: Distances between consecutive points in test subject's space are 5 10 12 11 7 17 11 8 Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_* Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_cpts_9.nii.gz Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.fx_avg16_syn_bbr_cpts_9.nii.gz Done in 2.241 sec. Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1001/syn/lh.ilf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1006/syn/lh.ilf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1007/syn/lh.ilf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1008/syn/lh.ilf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1009/syn/lh.ilf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1010/syn/lh.ilf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1011/syn/lh.ilf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1012/syn/lh.ilf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1013/syn/lh.ilf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1015/syn/lh.ilf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1016/syn/lh.ilf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1017/syn/lh.ilf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1019/syn/lh.ilf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1021/syn/lh.ilf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1023/syn/lh.ilf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1024/syn/lh.ilf.bbr.prep.trk Pre-sorted training .trk file detected INFO: Rejected 19 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Have 19981 total streamlines (min/mean/max length: 60/89/115) Processing pathway 29 of 42... INFO: Have 19981 non-truncated streamlines (min/mean/max length: 60/89/115) Computing path histograms INFO: Total streamline volume is 25651 voxels Finding outlier streamlines Updating streamline distance ranking INFO: Split streamlines into 25 segments Computing prior on underlying anatomy (all streamlines) Selecting 8 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.0581179 INFO: Points where local peaks in curvature occur are 85 77 37 (curv = 0.152285) 83 74 39 (curv = 0.314549) 84 56 45 (curv = 0.0722131) 81 48 49 (curv = 0.0613666) 71 34 49 (curv = 0.0932476) INFO: Intermediate dominant points are 84 85 31 83 74 39 84 68 41 84 56 45 81 48 49 78 41 50 71 34 49 66 28 45 INFO: Final dominant points are 84 85 31 83 74 39 85 61 44 84 56 45 81 48 49 75 38 50 71 34 49 66 28 45 INFO: Selected control points are 84 85 31 84 74 39 84 62 43 84 56 46 81 48 49 76 38 50 71 34 49 66 28 45 INFO: Distances between consecutive points are 14 13 7 9 11 6 9 INFO: Selected control points in test subject's space are 95 77 16 95 68 27 96 56 33 95 51 37 91 44 42 87 33 45 82 29 44 78 20 40 INFO: Distances between consecutive points in test subject's space are 14 13 6 9 12 6 11 Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_* Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_cpts_8.nii.gz Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lh.ilf_avg16_syn_bbr_cpts_8.nii.gz Done in 5.768 sec. Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1001/syn/rh.ilf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1006/syn/rh.ilf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1007/syn/rh.ilf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1008/syn/rh.ilf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1009/syn/rh.ilf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1010/syn/rh.ilf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1011/syn/rh.ilf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1012/syn/rh.ilf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1013/syn/rh.ilf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1015/syn/rh.ilf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1016/syn/rh.ilf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1017/syn/rh.ilf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1019/syn/rh.ilf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1021/syn/rh.ilf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1023/syn/rh.ilf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1024/syn/rh.ilf.bbr.prep.trk Pre-sorted training .trk file detected INFO: Rejected 13 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Have 19987 total streamlines (min/mean/max length: 70/88/110) Processing pathway 30 of 42... INFO: Have 19987 non-truncated streamlines (min/mean/max length: 70/88/110) Computing path histograms INFO: Total streamline volume is 28003 voxels Finding outlier streamlines Updating streamline distance ranking INFO: Split streamlines into 25 segments Computing prior on underlying anatomy (all streamlines) Selecting 8 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.0713758 INFO: Points where local peaks in curvature occur are 32 77 35 (curv = 0.186278) 35 70 43 (curv = 0.124588) 36 52 47 (curv = 0.0774648) 39 43 50 (curv = 0.108148) 46 34 50 (curv = 0.178865) INFO: Intermediate dominant points are 33 87 27 32 77 35 35 70 43 34 63 45 36 52 47 39 43 50 46 34 50 51 30 44 INFO: Final dominant points are 33 87 27 32 77 35 35 70 43 35 58 46 36 52 47 39 43 50 46 34 50 51 30 44 INFO: Selected control points are 33 87 27 33 77 35 34 70 43 35 58 46 37 52 47 40 43 50 46 34 50 51 30 44 INFO: Distances between consecutive points are 13 11 12 6 10 11 9 INFO: Selected control points in test subject's space are 44 78 12 44 70 23 45 64 32 46 53 37 49 46 40 52 38 45 58 29 45 62 22 39 INFO: Distances between consecutive points in test subject's space are 14 11 12 8 10 11 10 Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_* Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_cpts_8.nii.gz Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.ilf_avg16_syn_bbr_cpts_8.nii.gz Done in 6.029 sec. Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1001/syn/lh.mlf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1006/syn/lh.mlf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1007/syn/lh.mlf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1008/syn/lh.mlf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1009/syn/lh.mlf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1010/syn/lh.mlf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1011/syn/lh.mlf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1012/syn/lh.mlf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1013/syn/lh.mlf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1015/syn/lh.mlf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1016/syn/lh.mlf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1017/syn/lh.mlf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1019/syn/lh.mlf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1021/syn/lh.mlf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1023/syn/lh.mlf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1024/syn/lh.mlf.bbr.prep.trk Pre-sorted training .trk file detected INFO: Rejected 0 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Have 10877 total streamlines (min/mean/max length: 48/76/109) Processing pathway 31 of 42... INFO: Have 9943 non-truncated streamlines (min/mean/max length: 48/74/109) Computing path histograms INFO: Total streamline volume is 17176 voxels Finding outlier streamlines Updating streamline distance ranking INFO: Split streamlines into 19 segments Computing prior on underlying anatomy (all streamlines) Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0930248 INFO: Points where local peaks in curvature occur are 90 78 44 (curv = 0.15591) 87 72 48 (curv = 0.102872) 83 65 49 (curv = 0.137098) 80 63 52 (curv = 0.0946368) 80 60 55 (curv = 0.0942505) 81 57 57 (curv = 0.168485) 73 37 59 (curv = 0.164142) 69 35 62 (curv = 0.22513) INFO: Intermediate dominant points are 91 85 41 90 78 44 83 65 49 81 57 57 78 46 60 69 35 62 69 32 72 INFO: Final dominant points are 91 85 41 90 78 44 83 65 49 81 57 57 73 39 59 69 35 62 69 32 72 INFO: Selected control points are 91 85 41 90 78 45 83 66 49 80 57 58 74 39 60 70 35 62 69 32 72 INFO: Distances between consecutive points are 8 14 13 19 6 10 INFO: Selected control points in test subject's space are 104 79 27 103 73 32 95 61 38 90 54 49 85 34 54 82 30 55 81 28 67 INFO: Distances between consecutive points in test subject's space are 8 16 14 21 5 12 Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_* Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_cpts_7.nii.gz Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lh.mlf_avg16_syn_bbr_cpts_7.nii.gz Done in 3.885 sec. Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1001/syn/rh.mlf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1006/syn/rh.mlf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1007/syn/rh.mlf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1008/syn/rh.mlf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1009/syn/rh.mlf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1010/syn/rh.mlf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1011/syn/rh.mlf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1012/syn/rh.mlf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1013/syn/rh.mlf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1015/syn/rh.mlf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1016/syn/rh.mlf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1017/syn/rh.mlf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1019/syn/rh.mlf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1021/syn/rh.mlf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1023/syn/rh.mlf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1024/syn/rh.mlf.bbr.prep.trk Pre-sorted training .trk file detected INFO: Rejected 0 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Have 20000 total streamlines (min/mean/max length: 50/72/113) Processing pathway 32 of 42... INFO: Have 20000 non-truncated streamlines (min/mean/max length: 50/72/113) Computing path histograms INFO: Total streamline volume is 20233 voxels Finding outlier streamlines Updating streamline distance ranking INFO: Split streamlines into 19 segments Computing prior on underlying anatomy (all streamlines) Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0971131 INFO: Points where local peaks in curvature occur are 27 76 46 (curv = 0.170062) 30 72 49 (curv = 0.111014) 35 67 49 (curv = 0.215758) 39 64 53 (curv = 0.155025) 38 57 60 (curv = 0.107233) 44 40 60 (curv = 0.28821) 45 35 67 (curv = 0.223126) INFO: Intermediate dominant points are 28 85 46 27 76 46 35 67 49 39 64 53 38 57 60 44 40 60 47 38 74 INFO: Final dominant points are 28 85 46 27 76 46 35 67 49 39 64 53 38 57 60 44 40 60 47 38 74 INFO: Selected control points are 28 85 46 27 76 47 35 68 50 39 64 53 38 57 61 43 39 61 47 38 74 INFO: Distances between consecutive points are 9 12 6 11 19 14 INFO: Selected control points in test subject's space are 38 80 33 37 70 35 46 63 39 51 59 42 51 53 52 55 35 55 59 35 68 INFO: Distances between consecutive points in test subject's space are 10 12 7 12 19 14 Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_* Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_cpts_7.nii.gz Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.mlf_avg16_syn_bbr_cpts_7.nii.gz Done in 4.852 sec. Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1001/syn/lh.or.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1006/syn/lh.or.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1007/syn/lh.or.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1008/syn/lh.or.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1009/syn/lh.or.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1010/syn/lh.or.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1011/syn/lh.or.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1012/syn/lh.or.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1013/syn/lh.or.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1015/syn/lh.or.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1016/syn/lh.or.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1017/syn/lh.or.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1019/syn/lh.or.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1021/syn/lh.or.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1023/syn/lh.or.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1024/syn/lh.or.bbr.prep.trk Pre-sorted training .trk file detected INFO: Rejected 12 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Have 19988 total streamlines (min/mean/max length: 32/54/75) Processing pathway 33 of 42... INFO: Have 19988 non-truncated streamlines (min/mean/max length: 32/54/75) Computing path histograms INFO: Total streamline volume is 15082 voxels Finding outlier streamlines Updating streamline distance ranking INFO: Split streamlines into 14 segments Computing prior on underlying anatomy (all streamlines) Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0980106 INFO: Points where local peaks in curvature occur are 70 30 52 (curv = 0.32217) 66 31 57 (curv = 0.233826) INFO: Intermediate dominant points are 66 64 48 80 57 52 78 40 54 70 30 52 74 30 63 INFO: Final dominant points are 66 64 48 80 50 54 77 37 54 70 30 52 74 30 63 INFO: Selected control points are 66 64 48 82 52 54 77 36 53 67 32 53 74 30 63 INFO: Distances between consecutive points are 21 17 11 12 INFO: Selected control points in test subject's space are 77 58 38 92 49 46 88 32 48 79 27 47 86 26 58 INFO: Distances between consecutive points in test subject's space are 19 18 10 13 Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_* Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_cpts_5.nii.gz Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lh.or_avg16_syn_bbr_cpts_5.nii.gz Done in 4.253 sec. Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1001/syn/rh.or.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1006/syn/rh.or.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1007/syn/rh.or.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1008/syn/rh.or.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1009/syn/rh.or.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1010/syn/rh.or.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1011/syn/rh.or.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1012/syn/rh.or.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1013/syn/rh.or.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1015/syn/rh.or.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1016/syn/rh.or.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1017/syn/rh.or.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1019/syn/rh.or.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1021/syn/rh.or.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1023/syn/rh.or.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1024/syn/rh.or.bbr.prep.trk Pre-sorted training .trk file detected INFO: Rejected 8 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Have 19358 total streamlines (min/mean/max length: 34/55/71) Processing pathway 34 of 42... INFO: Have 14606 non-truncated streamlines (min/mean/max length: 34/54/71) Computing path histograms INFO: Total streamline volume is 14540 voxels Finding outlier streamlines Updating streamline distance ranking INFO: Split streamlines into 14 segments Computing prior on underlying anatomy (all streamlines) Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.0787671 INFO: Points where local peaks in curvature occur are 42 65 52 (curv = 0.156336) 46 30 56 (curv = 0.196545) INFO: Intermediate dominant points are 53 65 49 42 65 52 39 51 56 46 30 56 50 30 64 INFO: Final dominant points are 53 65 49 42 65 52 42 38 55 46 30 56 50 30 64 INFO: Selected control points are 53 65 49 41 64 52 41 40 56 46 31 55 50 30 64 INFO: Distances between consecutive points are 12 24 10 10 INFO: Selected control points in test subject's space are 65 60 39 53 59 41 53 36 51 58 27 50 62 26 58 INFO: Distances between consecutive points in test subject's space are 12 25 10 9 Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_* Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_cpts_5.nii.gz Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.or_avg16_syn_bbr_cpts_5.nii.gz Done in 4.211 sec. Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1001/syn/lh.slf1.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1006/syn/lh.slf1.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1007/syn/lh.slf1.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1008/syn/lh.slf1.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1009/syn/lh.slf1.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1010/syn/lh.slf1.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1011/syn/lh.slf1.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1012/syn/lh.slf1.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1013/syn/lh.slf1.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1015/syn/lh.slf1.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1016/syn/lh.slf1.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1017/syn/lh.slf1.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1019/syn/lh.slf1.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1021/syn/lh.slf1.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1023/syn/lh.slf1.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1024/syn/lh.slf1.bbr.prep.trk Pre-sorted training .trk file detected INFO: Rejected 0 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Have 4252 total streamlines (min/mean/max length: 30/79/118) Processing pathway 35 of 42... INFO: Have 3672 non-truncated streamlines (min/mean/max length: 30/79/118) Computing path histograms INFO: Total streamline volume is 12147 voxels Finding outlier streamlines Updating streamline distance ranking INFO: Split streamlines into 19 segments Computing prior on underlying anatomy (all streamlines) Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0932034 INFO: Points where local peaks in curvature occur are 68 104 71 (curv = 0.223459) 69 101 69 (curv = 0.233108) 72 64 74 (curv = 0.121963) 70 51 77 (curv = 0.217867) 68 50 79 (curv = 0.374117) INFO: Intermediate dominant points are 64 107 77 69 101 69 68 89 75 69 77 76 72 64 74 68 50 79 63 51 83 INFO: Final dominant points are 64 107 77 69 101 69 68 84 76 70 72 76 72 64 74 68 50 79 63 51 83 INFO: Selected control points are 64 107 77 68 100 70 68 85 77 69 72 75 72 63 75 68 51 78 63 51 83 INFO: Distances between consecutive points are 11 17 13 9 13 7 INFO: Selected control points in test subject's space are 76 107 59 80 98 52 80 84 61 81 71 61 83 63 63 80 51 68 75 51 74 INFO: Distances between consecutive points in test subject's space are 12 17 13 8 13 8 Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_* Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_cpts_7.nii.gz Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lh.slf1_avg16_syn_bbr_cpts_7.nii.gz Done in 2.989 sec. Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1001/syn/rh.slf1.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1006/syn/rh.slf1.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1007/syn/rh.slf1.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1008/syn/rh.slf1.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1009/syn/rh.slf1.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1010/syn/rh.slf1.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1011/syn/rh.slf1.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1012/syn/rh.slf1.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1013/syn/rh.slf1.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1015/syn/rh.slf1.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1016/syn/rh.slf1.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1017/syn/rh.slf1.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1019/syn/rh.slf1.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1021/syn/rh.slf1.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1023/syn/rh.slf1.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1024/syn/rh.slf1.bbr.prep.trk Pre-sorted training .trk file detected INFO: Rejected 0 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Have 5134 total streamlines (min/mean/max length: 37/79/127) Processing pathway 36 of 42... INFO: Have 4242 non-truncated streamlines (min/mean/max length: 37/79/127) Computing path histograms INFO: Total streamline volume is 12764 voxels Finding outlier streamlines Updating streamline distance ranking INFO: Split streamlines into 18 segments Computing prior on underlying anatomy (all streamlines) Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.089911 INFO: Points where local peaks in curvature occur are 50 104 66 (curv = 0.432257) 52 96 71 (curv = 0.112668) 51 90 74 (curv = 0.130555) 47 64 71 (curv = 0.106115) 48 59 72 (curv = 0.17674) INFO: Intermediate dominant points are 55 106 72 50 104 66 51 90 74 50 77 74 47 65 71 48 59 72 55 51 83 INFO: Final dominant points are 55 106 72 50 104 66 51 90 74 48 72 72 47 65 71 48 59 72 55 51 83 INFO: Selected control points are 55 106 72 50 103 67 52 90 74 49 72 72 48 65 71 47 58 72 55 51 83 INFO: Distances between consecutive points are 8 15 18 7 7 15 INFO: Selected control points in test subject's space are 66 104 53 61 100 48 63 88 57 61 70 58 60 63 59 59 57 61 67 51 73 INFO: Distances between consecutive points in test subject's space are 8 15 18 7 6 16 Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_* Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_cpts_7.nii.gz Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.slf1_avg16_syn_bbr_cpts_7.nii.gz Done in 2.588 sec. Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1001/syn/lh.slf2.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1006/syn/lh.slf2.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1007/syn/lh.slf2.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1008/syn/lh.slf2.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1009/syn/lh.slf2.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1010/syn/lh.slf2.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1011/syn/lh.slf2.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1012/syn/lh.slf2.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1013/syn/lh.slf2.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1015/syn/lh.slf2.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1016/syn/lh.slf2.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1017/syn/lh.slf2.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1019/syn/lh.slf2.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1021/syn/lh.slf2.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1023/syn/lh.slf2.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1024/syn/lh.slf2.bbr.prep.trk Pre-sorted training .trk file detected INFO: Rejected 0 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Have 20000 total streamlines (min/mean/max length: 44/92/128) Processing pathway 37 of 42... INFO: Have 20000 non-truncated streamlines (min/mean/max length: 44/92/128) Computing path histograms INFO: Total streamline volume is 23301 voxels Finding outlier streamlines Updating streamline distance ranking INFO: Split streamlines into 23 segments Computing prior on underlying anatomy (all streamlines) Selecting 8 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.0636453 INFO: Points where local peaks in curvature occur are 77 94 66 (curv = 0.0723017) 75 89 70 (curv = 0.112335) 75 74 72 (curv = 0.0927823) 76 63 71 (curv = 0.0804595) 78 50 66 (curv = 0.0917398) 80 45 62 (curv = 0.328213) INFO: Intermediate dominant points are 81 109 57 78 100 61 75 89 70 75 74 72 76 63 71 77 55 68 80 45 62 85 40 71 INFO: Final dominant points are 81 109 57 77 93 66 75 89 70 75 74 72 76 63 71 78 50 66 80 45 62 85 40 71 INFO: Selected control points are 81 109 57 76 94 65 75 88 70 75 74 71 76 63 70 78 50 66 80 45 62 85 40 71 INFO: Distances between consecutive points are 18 8 14 11 14 7 11 INFO: Selected control points in test subject's space are 93 106 38 87 91 49 86 85 54 86 72 57 87 62 58 88 48 58 90 42 55 98 37 65 INFO: Distances between consecutive points in test subject's space are 20 8 13 10 14 7 14 Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_* Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_cpts_8.nii.gz Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lh.slf2_avg16_syn_bbr_cpts_8.nii.gz Done in 6.221 sec. Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1001/syn/rh.slf2.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1006/syn/rh.slf2.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1007/syn/rh.slf2.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1008/syn/rh.slf2.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1009/syn/rh.slf2.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1010/syn/rh.slf2.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1011/syn/rh.slf2.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1012/syn/rh.slf2.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1013/syn/rh.slf2.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1015/syn/rh.slf2.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1016/syn/rh.slf2.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1017/syn/rh.slf2.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1019/syn/rh.slf2.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1021/syn/rh.slf2.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1023/syn/rh.slf2.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1024/syn/rh.slf2.bbr.prep.trk Pre-sorted training .trk file detected INFO: Rejected 0 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Have 20000 total streamlines (min/mean/max length: 50/85/124) Processing pathway 38 of 42... INFO: Have 20000 non-truncated streamlines (min/mean/max length: 50/85/124) Computing path histograms INFO: Total streamline volume is 22247 voxels Finding outlier streamlines Updating streamline distance ranking INFO: Split streamlines into 21 segments Computing prior on underlying anatomy (all streamlines) Selecting 8 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.118397 INFO: Points where local peaks in curvature occur are 37 46 61 (curv = 0.941382) 39 48 64 (curv = 0.361379) INFO: Intermediate dominant points are 41 99 63 42 87 69 41 74 69 41 63 69 38 54 65 37 46 61 37 46 69 33 42 75 INFO: Final dominant points are 41 99 63 41 80 69 42 68 70 39 59 67 38 50 61 37 46 61 35 45 73 33 42 75 INFO: Selected control points are 41 99 63 42 80 70 42 68 69 39 59 67 37 50 61 38 47 61 36 46 72 33 42 75 INFO: Distances between consecutive points are 20 12 10 11 3 11 6 INFO: Selected control points in test subject's space are 54 95 46 55 77 55 54 65 56 52 56 57 51 46 53 51 43 54 49 43 64 44 39 70 INFO: Distances between consecutive points in test subject's space are 20 12 9 11 3 10 9 Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_* Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_cpts_8.nii.gz Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.slf2_avg16_syn_bbr_cpts_8.nii.gz Done in 5.85 sec. Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1001/syn/lh.slf3.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1006/syn/lh.slf3.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1007/syn/lh.slf3.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1008/syn/lh.slf3.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1009/syn/lh.slf3.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1010/syn/lh.slf3.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1011/syn/lh.slf3.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1012/syn/lh.slf3.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1013/syn/lh.slf3.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1015/syn/lh.slf3.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1016/syn/lh.slf3.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1017/syn/lh.slf3.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1019/syn/lh.slf3.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1021/syn/lh.slf3.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1023/syn/lh.slf3.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1024/syn/lh.slf3.bbr.prep.trk Pre-sorted training .trk file detected INFO: Rejected 0 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Have 20000 total streamlines (min/mean/max length: 27/70/109) Processing pathway 39 of 42... INFO: Have 20000 non-truncated streamlines (min/mean/max length: 27/70/109) Computing path histograms INFO: Total streamline volume is 19232 voxels Finding outlier streamlines Updating streamline distance ranking INFO: Split streamlines into 16 segments Computing prior on underlying anatomy (all streamlines) Selecting 6 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0861935 INFO: Points where local peaks in curvature occur are 80 102 54 (curv = 0.340364) 82 62 64 (curv = 0.135252) 84 57 63 (curv = 0.286435) INFO: Intermediate dominant points are 87 101 55 79 96 57 82 83 61 83 67 65 84 57 63 92 56 72 INFO: Final dominant points are 87 101 55 80 89 59 83 75 63 82 62 64 84 57 63 92 56 72 INFO: Selected control points are 87 101 55 78 91 58 84 75 63 82 63 65 84 57 64 92 56 72 INFO: Distances between consecutive points are 14 18 12 6 11 INFO: Selected control points in test subject's space are 99 97 38 88 87 43 95 72 50 92 61 54 94 55 55 106 55 64 INFO: Distances between consecutive points in test subject's space are 16 18 12 6 15 Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_* Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_cpts_6.nii.gz Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lh.slf3_avg16_syn_bbr_cpts_6.nii.gz Done in 4.905 sec. Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1001/syn/rh.slf3.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1006/syn/rh.slf3.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1007/syn/rh.slf3.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1008/syn/rh.slf3.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1009/syn/rh.slf3.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1010/syn/rh.slf3.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1011/syn/rh.slf3.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1012/syn/rh.slf3.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1013/syn/rh.slf3.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1015/syn/rh.slf3.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1016/syn/rh.slf3.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1017/syn/rh.slf3.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1019/syn/rh.slf3.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1021/syn/rh.slf3.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1023/syn/rh.slf3.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1024/syn/rh.slf3.bbr.prep.trk Pre-sorted training .trk file detected INFO: Rejected 5 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Have 19995 total streamlines (min/mean/max length: 39/74/107) Processing pathway 40 of 42... INFO: Have 19995 non-truncated streamlines (min/mean/max length: 39/74/107) Computing path histograms INFO: Total streamline volume is 19126 voxels Finding outlier streamlines Updating streamline distance ranking INFO: Split streamlines into 17 segments Computing prior on underlying anatomy (all streamlines) Selecting 6 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0696434 INFO: Points where local peaks in curvature occur are 38 101 56 (curv = 0.234452) 40 98 57 (curv = 0.265109) 39 84 60 (curv = 0.084022) 34 60 66 (curv = 0.071648) 32 57 67 (curv = 0.0979678) INFO: Intermediate dominant points are 29 98 51 40 98 57 39 84 60 37 74 64 32 57 67 29 50 72 INFO: Final dominant points are 29 98 51 40 98 57 39 84 60 35 63 66 32 57 67 29 50 72 INFO: Selected control points are 29 98 51 40 99 57 38 84 61 35 65 66 33 57 67 29 50 72 INFO: Distances between consecutive points are 13 16 20 8 9 INFO: Selected control points in test subject's space are 40 94 35 53 95 41 51 80 47 48 62 55 46 54 58 40 47 65 INFO: Distances between consecutive points in test subject's space are 14 16 20 9 12 Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_* Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_cpts_6.nii.gz Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.slf3_avg16_syn_bbr_cpts_6.nii.gz Done in 5.352 sec. Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1001/syn/lh.uf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1006/syn/lh.uf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1007/syn/lh.uf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1008/syn/lh.uf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1009/syn/lh.uf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1010/syn/lh.uf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1011/syn/lh.uf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1012/syn/lh.uf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1013/syn/lh.uf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1015/syn/lh.uf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1016/syn/lh.uf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1017/syn/lh.uf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1019/syn/lh.uf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1021/syn/lh.uf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1023/syn/lh.uf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1024/syn/lh.uf.bbr.prep.trk Pre-sorted training .trk file detected INFO: Rejected 16 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Have 5230 total streamlines (min/mean/max length: 45/72/94) Processing pathway 41 of 42... INFO: Have 5217 non-truncated streamlines (min/mean/max length: 45/72/94) Computing path histograms INFO: Total streamline volume is 7989 voxels Finding outlier streamlines Updating streamline distance ranking INFO: Split streamlines into 19 segments Computing prior on underlying anatomy (all streamlines) Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.110021 INFO: Points where local peaks in curvature occur are 74 107 46 (curv = 0.219991) 71 95 44 (curv = 0.228299) 79 82 41 (curv = 0.205912) 82 80 36 (curv = 0.219435) 83 86 32 (curv = 0.121888) INFO: Intermediate dominant points are 70 121 45 71 111 45 74 107 46 71 95 44 79 83 42 82 80 36 81 92 29 INFO: Final dominant points are 70 121 45 71 111 45 74 107 46 71 95 44 79 81 41 82 80 36 81 92 29 INFO: Selected control points are 70 121 45 70 111 45 74 106 46 72 95 44 79 82 41 82 81 35 81 92 29 INFO: Distances between consecutive points are 10 6 11 15 7 13 INFO: Selected control points in test subject's space are 81 116 24 81 105 26 85 100 28 82 87 28 90 76 28 93 74 22 92 82 13 INFO: Distances between consecutive points in test subject's space are 11 7 13 14 7 12 Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_* Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_cpts_7.nii.gz Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lh.uf_avg16_syn_bbr_cpts_7.nii.gz Done in 2.412 sec. Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1001/syn/rh.uf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1006/syn/rh.uf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1007/syn/rh.uf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1008/syn/rh.uf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1009/syn/rh.uf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1010/syn/rh.uf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1011/syn/rh.uf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1012/syn/rh.uf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1013/syn/rh.uf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1015/syn/rh.uf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1016/syn/rh.uf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1017/syn/rh.uf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1019/syn/rh.uf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1021/syn/rh.uf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1023/syn/rh.uf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1024/syn/rh.uf.bbr.prep.trk Pre-sorted training .trk file detected INFO: Rejected 58 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Have 8930 total streamlines (min/mean/max length: 44/72/96) Processing pathway 42 of 42... INFO: Have 8882 non-truncated streamlines (min/mean/max length: 44/72/96) Computing path histograms INFO: Total streamline volume is 8778 voxels Finding outlier streamlines Updating streamline distance ranking INFO: Split streamlines into 19 segments Computing prior on underlying anatomy (all streamlines) Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.0795367 INFO: Points where local peaks in curvature occur are 47 96 44 (curv = 0.0891536) 45 92 42 (curv = 0.102992) 40 80 40 (curv = 0.233043) 36 82 34 (curv = 0.202087) INFO: Intermediate dominant points are 53 118 38 48 110 42 47 97 44 45 92 42 40 80 40 36 84 32 37 92 28 INFO: Final dominant points are 53 118 38 48 104 43 47 96 44 45 92 42 40 80 40 37 87 30 37 92 28 INFO: Selected control points are 53 118 38 47 105 44 47 96 44 45 92 43 39 81 40 36 86 29 37 92 28 INFO: Distances between consecutive points are 16 9 5 13 12 6 INFO: Selected control points in test subject's space are 64 112 17 59 99 27 60 89 28 58 85 28 51 75 27 48 78 14 49 84 12 INFO: Distances between consecutive points in test subject's space are 17 10 4 12 14 6 Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_* Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_cpts_7.nii.gz Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.uf_avg16_syn_bbr_cpts_7.nii.gz Done in 2.995 sec. dmri_train done #------------------------------------- trac-preproc finished without error at Wed Jul 12 22:54:35 EDT 2023 New invocation of trac-all Wed Jul 12 23:30:06 EDT 2023 /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/trac-all -path -c trc_cm/dmrirc.bids_cm.banda Subject sub-BANDA002 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Actual FREESURFER_HOME /autofs/vast/freesurfer/centos7_x86_64/7.3.2 build-stamp.txt: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 erd37 launchpad.nmr.mgh.harvard.edu Linux launchpad.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 131070 memorylocked unlimited maxproc 32768 maxlocks unlimited maxsignal 127902 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 32778568 1682560 3530228 1656644 27565780 29037800 Swap: 67108856 2056 67106800 ######################################## Program versions: trac-all 7.3.2 mri_convert --all-info ProgramName: mri_convert ProgramArguments: mri_convert --all-info ProgramVersion: 7.3.2 TimeStamp: 2023/07/13-03:30:07-GMT BuildTime: Aug 4 2022 00:15:18 BuildStamp: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 User: erd37 Machine: launchpad.nmr.mgh.harvard.edu Platform: Linux PlatformVersion: 3.10.0-1160.92.1.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5 FLIRT version 6.0 bbregister 7.3.2 mri_cvs_register 7.3.2 ProgramName: dmri_motion ProgramArguments: /usr/local/freesurfer/7.3.2//bin/dmri_motion --all-info ProgramVersion: 7.3.2 TimeStamp: 2023/07/13-03:30:07-GMT BuildTime: Aug 4 2022 00:15:18 BuildStamp: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 User: erd37 Machine: launchpad.nmr.mgh.harvard.edu Platform: Linux PlatformVersion: 3.10.0-1160.92.1.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: dmri_train ProgramArguments: /usr/local/freesurfer/7.3.2//bin/dmri_train --all-info ProgramVersion: 7.3.2 TimeStamp: 2023/07/13-03:30:07-GMT BuildTime: Aug 4 2022 00:15:18 BuildStamp: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 User: erd37 Machine: launchpad.nmr.mgh.harvard.edu Platform: Linux PlatformVersion: 3.10.0-1160.92.1.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: dmri_paths ProgramArguments: /usr/local/freesurfer/7.3.2//bin/dmri_paths --all-info ProgramVersion: 7.3.2 TimeStamp: 2023/07/13-03:30:07-GMT BuildTime: Aug 4 2022 00:15:18 BuildStamp: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 User: erd37 Machine: launchpad.nmr.mgh.harvard.edu Platform: Linux PlatformVersion: 3.10.0-1160.92.1.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: dmri_pathstats ProgramArguments: /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --all-info ProgramVersion: 7.3.2 TimeStamp: 2023/07/13-03:30:07-GMT BuildTime: Aug 4 2022 00:15:18 BuildStamp: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 User: erd37 Machine: launchpad.nmr.mgh.harvard.edu Platform: Linux PlatformVersion: 3.10.0-1160.92.1.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: dmri_mergepaths ProgramArguments: /usr/local/freesurfer/7.3.2//bin/dmri_mergepaths --all-info ProgramVersion: 7.3.2 TimeStamp: 2023/07/13-03:30:07-GMT BuildTime: Aug 4 2022 00:15:18 BuildStamp: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 User: erd37 Machine: launchpad.nmr.mgh.harvard.edu Platform: Linux PlatformVersion: 3.10.0-1160.92.1.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: dmri_group ProgramArguments: /usr/local/freesurfer/7.3.2//bin/dmri_group --all-info ProgramVersion: 7.3.2 TimeStamp: 2023/07/13-03:30:07-GMT BuildTime: Aug 4 2022 00:15:18 BuildStamp: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 User: erd37 Machine: launchpad.nmr.mgh.harvard.edu Platform: Linux PlatformVersion: 3.10.0-1160.92.1.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5 INFO: current FREESURFER_HOME does not match that of previous processing. Current: /usr/local/freesurfer/7.3.2/ Previous: /usr/local/freesurfer/7.3.2 New invocation of trac-paths erd37 compute-0-3.nmr.mgh.harvard.edu Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse 7340032 kbytes descriptors 32768 memorylocked unlimited maxproc 127904 maxlocks unlimited maxsignal 127904 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 32778656 1548480 12061308 50136 19168868 30755540 Swap: 67108860 0 67108860 #------------------------------------- /usr/local/freesurfer/7.3.2//bin/trac-paths #------------------------------------- #@# DWI set selection Wed Jul 12 23:30:56 EDT 2023 ln -sf dwi.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/data.nii.gz ln -sf dwi.bvecs /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/bvecs ln -sf dwi.bvals /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/bvals #------------------------------------- #@# Path reconstruction Wed Jul 12 23:30:59 EDT 2023 rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/mcp_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.or_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.or_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr /usr/local/freesurfer/7.3.2//bin/dmri_paths --outdir /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/mcp_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr 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/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.or_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.or_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr --dwi /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/data.nii.gz --grad /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/bvecs --bval /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/bvals --mask /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/aparc+aseg_mask.bbr.nii.gz --bpdir /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri.bedpostX --ntr 2 --fmin 0.05 --roi1 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_end1_dil.nii.gz 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/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_end1_dil.nii.gz --roi2 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_end2_dil.nii.gz 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/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_end2_dil.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2syn.lta --regnl /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/syn_warp.m3z --init /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/acomm_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/cc.bodyc_avg16_syn_bbr_cpts_8.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/cc.bodyp_avg16_syn_bbr_cpts_9.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/cc.bodypf_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/cc.bodypm_avg16_syn_bbr_cpts_7.txt 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--nb 200 --ns 7500 --nu 0 --nk 5 --sdp /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/acomm_avg16_syn_bbr_cpts_7_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/cc.bodyc_avg16_syn_bbr_cpts_8_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/cc.bodyp_avg16_syn_bbr_cpts_9_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/cc.bodypf_avg16_syn_bbr_cpts_7_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/cc.bodypm_avg16_syn_bbr_cpts_7_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/cc.bodyt_avg16_syn_bbr_cpts_12_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/cc.genu_avg16_syn_bbr_cpts_5_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/cc.rostrum_avg16_syn_bbr_cpts_5_std.txt 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/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lh.or_avg16_syn_bbr_cpts_5_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.or_avg16_syn_bbr_cpts_5_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lh.slf1_avg16_syn_bbr_cpts_7_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.slf1_avg16_syn_bbr_cpts_7_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lh.slf2_avg16_syn_bbr_cpts_8_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.slf2_avg16_syn_bbr_cpts_8_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lh.slf3_avg16_syn_bbr_cpts_6_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.slf3_avg16_syn_bbr_cpts_6_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lh.uf_avg16_syn_bbr_cpts_7_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.uf_avg16_syn_bbr_cpts_7_std.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_paths --outdir /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/mcp_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.or_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.or_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr --dwi /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/data.nii.gz --grad /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/bvecs --bval /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/bvals --mask /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/aparc+aseg_mask.bbr.nii.gz --bpdir /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri.bedpostX --ntr 2 --fmin 0.05 --roi1 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_end1_dil.nii.gz 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/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_end1_dil.nii.gz --roi2 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_end2_dil.nii.gz 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/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.ilf_avg16_syn_bbr_cpts_8_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lh.mlf_avg16_syn_bbr_cpts_7_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.mlf_avg16_syn_bbr_cpts_7_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lh.or_avg16_syn_bbr_cpts_5_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.or_avg16_syn_bbr_cpts_5_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lh.slf1_avg16_syn_bbr_cpts_7_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.slf1_avg16_syn_bbr_cpts_7_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lh.slf2_avg16_syn_bbr_cpts_8_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.slf2_avg16_syn_bbr_cpts_8_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lh.slf3_avg16_syn_bbr_cpts_6_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.slf3_avg16_syn_bbr_cpts_6_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lh.uf_avg16_syn_bbr_cpts_7_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.uf_avg16_syn_bbr_cpts_7_std.txt sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Output directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/mcp_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.or_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.or_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr DWIs: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/data.nii.gz Gradients: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/bvecs B-values: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/bvals Mask: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/aparc+aseg_mask.bbr.nii.gz BEDPOST directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri.bedpostX Max number of tracts per voxel: 2 Tract volume fraction threshold: 0.05 Initial control point file: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/acomm_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/cc.bodyc_avg16_syn_bbr_cpts_8.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/cc.bodyp_avg16_syn_bbr_cpts_9.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/cc.bodypf_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/cc.bodypm_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/cc.bodyt_avg16_syn_bbr_cpts_12.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/cc.genu_avg16_syn_bbr_cpts_5.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/cc.rostrum_avg16_syn_bbr_cpts_5.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/cc.splenium_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/mcp_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lh.af_avg16_syn_bbr_cpts_9.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.af_avg16_syn_bbr_cpts_9.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lh.ar_avg16_syn_bbr_cpts_4.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.ar_avg16_syn_bbr_cpts_4.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lh.atr_avg16_syn_bbr_cpts_4.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.atr_avg16_syn_bbr_cpts_4.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lh.cbd_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.cbd_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lh.cbv_avg16_syn_bbr_cpts_5.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.cbv_avg16_syn_bbr_cpts_5.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lh.cst_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.cst_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lh.emc_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.emc_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lh.fat_avg16_syn_bbr_cpts_5.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.fat_avg16_syn_bbr_cpts_5.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lh.fx_avg16_syn_bbr_cpts_9.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.fx_avg16_syn_bbr_cpts_9.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lh.ilf_avg16_syn_bbr_cpts_8.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.ilf_avg16_syn_bbr_cpts_8.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lh.mlf_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.mlf_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lh.or_avg16_syn_bbr_cpts_5.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.or_avg16_syn_bbr_cpts_5.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lh.slf1_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.slf1_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lh.slf2_avg16_syn_bbr_cpts_8.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.slf2_avg16_syn_bbr_cpts_8.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lh.slf3_avg16_syn_bbr_cpts_6.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.slf3_avg16_syn_bbr_cpts_6.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lh.uf_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.uf_avg16_syn_bbr_cpts_7.txt End ROI 1: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_end1_dil.nii.gz End ROI 2: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_end2_dil.nii.gz Neighbor aseg prior: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnprior_all Neighbor aseg label ID list: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnids_all Neighbor aseg prior set: 14 Local aseg prior: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsprior_all Local aseg label ID list: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsids_all Local aseg prior set: 15 Segmentation map: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/aparc+aseg+thalnuc.nii.gz DWI-to-atlas affine registration: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2syn.lta DWI-to-atlas nonlinear registration: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/syn_warp.m3z Number of burn-in samples: 200 Number of post-burn-in samples: 7500 Keep every: 5-th sample Update proposal every: 0-th sample Initial proposal SD file: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/acomm_avg16_syn_bbr_cpts_7_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/cc.bodyc_avg16_syn_bbr_cpts_8_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/cc.bodyp_avg16_syn_bbr_cpts_9_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/cc.bodypf_avg16_syn_bbr_cpts_7_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/cc.bodypm_avg16_syn_bbr_cpts_7_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/cc.bodyt_avg16_syn_bbr_cpts_12_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/cc.genu_avg16_syn_bbr_cpts_5_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/cc.rostrum_avg16_syn_bbr_cpts_5_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/cc.splenium_avg16_syn_bbr_cpts_7_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/mcp_avg16_syn_bbr_cpts_7_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lh.af_avg16_syn_bbr_cpts_9_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.af_avg16_syn_bbr_cpts_9_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lh.ar_avg16_syn_bbr_cpts_4_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.ar_avg16_syn_bbr_cpts_4_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lh.atr_avg16_syn_bbr_cpts_4_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.atr_avg16_syn_bbr_cpts_4_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lh.cbd_avg16_syn_bbr_cpts_7_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.cbd_avg16_syn_bbr_cpts_7_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lh.cbv_avg16_syn_bbr_cpts_5_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.cbv_avg16_syn_bbr_cpts_5_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lh.cst_avg16_syn_bbr_cpts_7_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.cst_avg16_syn_bbr_cpts_7_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lh.emc_avg16_syn_bbr_cpts_7_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.emc_avg16_syn_bbr_cpts_7_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lh.fat_avg16_syn_bbr_cpts_5_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.fat_avg16_syn_bbr_cpts_5_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lh.fx_avg16_syn_bbr_cpts_9_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.fx_avg16_syn_bbr_cpts_9_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lh.ilf_avg16_syn_bbr_cpts_8_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.ilf_avg16_syn_bbr_cpts_8_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lh.mlf_avg16_syn_bbr_cpts_7_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.mlf_avg16_syn_bbr_cpts_7_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lh.or_avg16_syn_bbr_cpts_5_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.or_avg16_syn_bbr_cpts_5_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lh.slf1_avg16_syn_bbr_cpts_7_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.slf1_avg16_syn_bbr_cpts_7_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lh.slf2_avg16_syn_bbr_cpts_8_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.slf2_avg16_syn_bbr_cpts_8_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lh.slf3_avg16_syn_bbr_cpts_6_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.slf3_avg16_syn_bbr_cpts_6_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lh.uf_avg16_syn_bbr_cpts_7_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.uf_avg16_syn_bbr_cpts_7_std.txt Loading DWIs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/data.nii.gz Loading mask from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/aparc+aseg_mask.bbr.nii.gz Loading BEDPOST parameter samples from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri.bedpostX Loading b-values from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/bvals Loading gradients from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/bvecs INFO: Found 28 baseline images (b = 5) out of a total of 398 frames INFO: Found 422308 voxels in brain mask INFO: Resolution of DWI space relative to base space is (1, 1, 1) Loading atlas reference volume from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_end1_dil.nii.gz Loading affine registration from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2syn.lta LTA registration format detected FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -3.375, ref det = -3.375 Loading non-linear registration from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/syn_warp.m3z setting orig areas to linear transform determinant scaled 1.00 Reading morph inverse Reading /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/syn_warp.m3z.inv.x.mgz Reading /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/syn_warp.m3z.inv.y.mgz Reading /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/syn_warp.m3z.inv.z.mgz Loading segmentation map from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/aparc+aseg+thalnuc.nii.gz Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/acomm_avg16_syn_bbr_cpts_7.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/acomm_avg16_syn_bbr_cpts_7_std.txt Processing pathway 1 of 42... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Success after 5 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr Done in 927.284 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/cc.bodyc_avg16_syn_bbr_cpts_8.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/cc.bodyc_avg16_syn_bbr_cpts_8_std.txt Processing pathway 2 of 42... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr Done in 1132.92 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/cc.bodyp_avg16_syn_bbr_cpts_9.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/cc.bodyp_avg16_syn_bbr_cpts_9_std.txt Processing pathway 3 of 42... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Success after 1 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr Done in 1365.64 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/cc.bodypf_avg16_syn_bbr_cpts_7.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/cc.bodypf_avg16_syn_bbr_cpts_7_std.txt Processing pathway 4 of 42... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr Done in 928.142 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/cc.bodypm_avg16_syn_bbr_cpts_7.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/cc.bodypm_avg16_syn_bbr_cpts_7_std.txt Processing pathway 5 of 42... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr Done in 936.187 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/cc.bodyt_avg16_syn_bbr_cpts_12.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/cc.bodyt_avg16_syn_bbr_cpts_12_std.txt Processing pathway 6 of 42... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr Done in 2065.75 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/cc.genu_avg16_syn_bbr_cpts_5.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/cc.genu_avg16_syn_bbr_cpts_5_std.txt Processing pathway 7 of 42... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr Done in 588.206 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/cc.rostrum_avg16_syn_bbr_cpts_5.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/cc.rostrum_avg16_syn_bbr_cpts_5_std.txt Processing pathway 8 of 42... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr Done in 579.143 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/cc.splenium_avg16_syn_bbr_cpts_7.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/cc.splenium_avg16_syn_bbr_cpts_7_std.txt Processing pathway 9 of 42... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr Done in 1132.31 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/mcp_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/mcp_avg16_syn_bbr_cpts_7.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/mcp_avg16_syn_bbr_cpts_7_std.txt Processing pathway 10 of 42... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/mcp_avg16_syn_bbr Done in 1438.82 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lh.af_avg16_syn_bbr_cpts_9.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lh.af_avg16_syn_bbr_cpts_9_std.txt Processing pathway 11 of 42... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 7 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 7 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 7 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Success after 4 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr Done in 1659.97 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.af_avg16_syn_bbr_cpts_9.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.af_avg16_syn_bbr_cpts_9_std.txt Processing pathway 12 of 42... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 7 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 7 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 7 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 7 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 7 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 7 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 7 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 7 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 7 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 7 INFO: Attempting to perturb control points INFO: Reverting to original control points Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr Done in 1725.91 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lh.ar_avg16_syn_bbr_cpts_4.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lh.ar_avg16_syn_bbr_cpts_4_std.txt Processing pathway 13 of 42... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr Done in 350.947 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.ar_avg16_syn_bbr_cpts_4.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.ar_avg16_syn_bbr_cpts_4_std.txt Processing pathway 14 of 42... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr Done in 378.492 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lh.atr_avg16_syn_bbr_cpts_4.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lh.atr_avg16_syn_bbr_cpts_4_std.txt Processing pathway 15 of 42... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Success after 1 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr Done in 425.928 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.atr_avg16_syn_bbr_cpts_4.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.atr_avg16_syn_bbr_cpts_4_std.txt Processing pathway 16 of 42... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr Done in 463.668 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lh.cbd_avg16_syn_bbr_cpts_7.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lh.cbd_avg16_syn_bbr_cpts_7_std.txt Processing pathway 17 of 42... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Success after 1 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr Done in 1095.65 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.cbd_avg16_syn_bbr_cpts_7.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.cbd_avg16_syn_bbr_cpts_7_std.txt Processing pathway 18 of 42... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr Done in 1028.93 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lh.cbv_avg16_syn_bbr_cpts_5.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lh.cbv_avg16_syn_bbr_cpts_5_std.txt Processing pathway 19 of 42... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Success after 7 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr Done in 451.425 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.cbv_avg16_syn_bbr_cpts_5.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.cbv_avg16_syn_bbr_cpts_5_std.txt Processing pathway 20 of 42... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr Done in 509.828 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lh.cst_avg16_syn_bbr_cpts_7.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lh.cst_avg16_syn_bbr_cpts_7_std.txt Processing pathway 21 of 42... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr Done in 1097.67 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.cst_avg16_syn_bbr_cpts_7.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.cst_avg16_syn_bbr_cpts_7_std.txt Processing pathway 22 of 42... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr Done in 1296.38 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lh.emc_avg16_syn_bbr_cpts_7.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lh.emc_avg16_syn_bbr_cpts_7_std.txt Processing pathway 23 of 42... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr Done in 963.266 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.emc_avg16_syn_bbr_cpts_7.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.emc_avg16_syn_bbr_cpts_7_std.txt Processing pathway 24 of 42... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Success after 2 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr Done in 966.04 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lh.fat_avg16_syn_bbr_cpts_5.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lh.fat_avg16_syn_bbr_cpts_5_std.txt Processing pathway 25 of 42... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr Done in 486.797 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.fat_avg16_syn_bbr_cpts_5.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.fat_avg16_syn_bbr_cpts_5_std.txt Processing pathway 26 of 42... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr Done in 546.626 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lh.fx_avg16_syn_bbr_cpts_9.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lh.fx_avg16_syn_bbr_cpts_9_std.txt Processing pathway 27 of 42... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 7 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 7 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 7 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 8 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 8 INFO: Attempting to perturb control points INFO: Success after 5 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr Done in 1408.46 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.fx_avg16_syn_bbr_cpts_9.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.fx_avg16_syn_bbr_cpts_9_std.txt Processing pathway 28 of 42... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Success after 1 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr Done in 1500.3 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lh.ilf_avg16_syn_bbr_cpts_8.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lh.ilf_avg16_syn_bbr_cpts_8_std.txt Processing pathway 29 of 42... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr Done in 919.584 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.ilf_avg16_syn_bbr_cpts_8.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.ilf_avg16_syn_bbr_cpts_8_std.txt Processing pathway 30 of 42... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 6 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Reverting to original control points Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr Done in 980.607 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lh.mlf_avg16_syn_bbr_cpts_7.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lh.mlf_avg16_syn_bbr_cpts_7_std.txt Processing pathway 31 of 42... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 1 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 1 INFO: Attempting to perturb control points INFO: Success after 2 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr Done in 817.171 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.mlf_avg16_syn_bbr_cpts_7.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.mlf_avg16_syn_bbr_cpts_7_std.txt Processing pathway 32 of 42... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr Done in 803.621 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.or_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lh.or_avg16_syn_bbr_cpts_5.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lh.or_avg16_syn_bbr_cpts_5_std.txt Processing pathway 33 of 42... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.or_avg16_syn_bbr Done in 669.219 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.or_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.or_avg16_syn_bbr_cpts_5.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.or_avg16_syn_bbr_cpts_5_std.txt Processing pathway 34 of 42... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.or_avg16_syn_bbr Done in 649.056 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lh.slf1_avg16_syn_bbr_cpts_7.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lh.slf1_avg16_syn_bbr_cpts_7_std.txt Processing pathway 35 of 42... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Success after 1 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr Done in 1182.35 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.slf1_avg16_syn_bbr_cpts_7.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.slf1_avg16_syn_bbr_cpts_7_std.txt Processing pathway 36 of 42... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 1 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 1 INFO: Attempting to perturb control points INFO: Success after 2 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr Done in 1171.45 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lh.slf2_avg16_syn_bbr_cpts_8.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lh.slf2_avg16_syn_bbr_cpts_8_std.txt Processing pathway 37 of 42... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Success after 1 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr Done in 1512.05 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.slf2_avg16_syn_bbr_cpts_8.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.slf2_avg16_syn_bbr_cpts_8_std.txt Processing pathway 38 of 42... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 7 INFO: Attempting to perturb control points INFO: Success after 1 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr Done in 1359.95 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lh.slf3_avg16_syn_bbr_cpts_6.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lh.slf3_avg16_syn_bbr_cpts_6_std.txt Processing pathway 39 of 42... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr Done in 815.85 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.slf3_avg16_syn_bbr_cpts_6.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.slf3_avg16_syn_bbr_cpts_6_std.txt Processing pathway 40 of 42... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr Done in 948.125 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lh.uf_avg16_syn_bbr_cpts_7.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lh.uf_avg16_syn_bbr_cpts_7_std.txt Processing pathway 41 of 42... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Success after 1 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr Done in 857.053 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.uf_avg16_syn_bbr_cpts_7.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.uf_avg16_syn_bbr_cpts_7_std.txt Processing pathway 42 of 42... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 4 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 4 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 4 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Success after 8 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr Done in 903.908 sec. dmri_paths done fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/path.pd.nii.gz -thr 51.2000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/path.pd.nii.gz -thr 24.2000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/path.pd.nii.gz -thr 25.2000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/path.pd.nii.gz -thr 41.0000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/path.pd.nii.gz -thr 18.6000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/path.pd.nii.gz -thr 21.6000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/path.pd.nii.gz -thr 26.8000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/path.pd.nii.gz -thr 25.8000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/path.pd.nii.gz -thr 42.0000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/mcp_avg16_syn_bbr/path.pd.nii.gz -thr 40.6000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/mcp_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/mcp_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/path.pd.nii.gz -thr 69.0000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/path.pd.nii.gz -thr 71.4000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/path.pd.nii.gz -thr 87.4000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/path.pd.nii.gz -thr 94.2000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/path.pd.nii.gz -thr 50.4000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/path.pd.nii.gz -thr 92.8000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/path.pd.nii.gz -thr 115.6000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/path.pd.nii.gz -thr 232.8000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/path.pd.nii.gz -thr 52.8000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/path.pd.nii.gz -thr 68.6000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/path.pd.nii.gz -thr 206.8000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/path.pd.nii.gz -thr 257.8000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/path.pd.nii.gz -thr 84.0000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/path.pd.nii.gz -thr 68.2000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/path.pd.nii.gz -thr 82.2000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/path.pd.nii.gz -thr 39.6000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/path.pd.nii.gz -thr 42.8000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/path.pd.nii.gz -thr 50.4000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/path.pd.nii.gz -thr 38.0000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/path.pd.nii.gz -thr 26.8000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/path.pd.nii.gz -thr 47.2000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/path.pd.nii.gz -thr 53.4000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/path.pd.nii.gz -thr 66.4000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/path.pd.nii.gz -thr 72.2000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/tmp.nii.gz rm -rf 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/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/tmp.nii.gz New invocation of trac-preproc erd37 compute-0-3.nmr.mgh.harvard.edu Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse 7340032 kbytes descriptors 32768 memorylocked unlimited maxproc 127904 maxlocks unlimited maxsignal 127904 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 32778656 3445340 6346996 50048 22986320 28859140 Swap: 67108860 8200 67100660 #------------------------------------- /usr/local/freesurfer/7.3.2//bin/trac-preproc #------------------------------------- #@# Priors Thu Jul 13 11:04:44 EDT 2023 /usr/local/freesurfer/7.3.2//bin/dmri_train --outdir /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn --out lh.cst_avg16_syn_bbr rh.cst_avg16_syn_bbr --slist /scratch/19738367/tmp.xTtiZM.16.sub-BANDA002.txt --trk syn/lh.cst.bbr.prep.trk syn/rh.cst.bbr.prep.trk --seg syn/aparc+aseg+thalnuc.nii.gz --cmask syn/cortex+2mm+crblm.nii.gz --lmask 16 16 --bmask /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/aparc+aseg_mask.nii.gz --fa /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit_FA.nii.gz --cptdir /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff --regnl /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/syn_warp.m3z --refnl /usr/local/freesurfer/7.3.2//trctrain/hcp/MGH35_HCP_FA_template.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/syn2diff.lta --ncpts 7 7 --xstr --trunc --aprior 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_train --outdir /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn --out lh.cst_avg16_syn_bbr rh.cst_avg16_syn_bbr --slist /scratch/19738367/tmp.xTtiZM.16.sub-BANDA002.txt --trk syn/lh.cst.bbr.prep.trk syn/rh.cst.bbr.prep.trk --seg syn/aparc+aseg+thalnuc.nii.gz --cmask syn/cortex+2mm+crblm.nii.gz --lmask 16 16 --bmask /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/aparc+aseg_mask.nii.gz --fa /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit_FA.nii.gz --cptdir /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff --regnl /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/syn_warp.m3z --refnl /usr/local/freesurfer/7.3.2//trctrain/hcp/MGH35_HCP_FA_template.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/syn2diff.lta --ncpts 7 7 --xstr --trunc --aprior sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Output directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn Output directory in test subject's space: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff Training subject directory list: /scratch/19738367/tmp.xTtiZM.16.sub-BANDA002.txt Location of streamline files relative to base: syn/lh.cst.bbr.prep.trk syn/rh.cst.bbr.prep.trk Location of cortex masks relative to base: syn/cortex+2mm+crblm.nii.gz Label ID's from aparc+aseg to add to cortex mask: 16 16 Location of aparc+aseg's relative to base: syn/aparc+aseg+thalnuc.nii.gz Brain mask for output subject: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/aparc+aseg_mask.nii.gz FA map for output subject: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit_FA.nii.gz Affine registration from atlas to base for output subject: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/syn2diff.lta Nonlinear registration from atlas to base for output subject: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/syn_warp.m3z Nonlinear registration source reference for output subject: /autofs/vast/freesurfer/centos7_x86_64/7.3.2/trctrain/hcp/MGH35_HCP_FA_template.nii.gz Number of control points for initial spline: 7 7 Exclude previously chosen center streamlines: 1 Use truncated streamlines: 1 Compute priors on underlying anatomy: 1 Compute priors on shape: 0 Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1001/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1001/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1006/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1006/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1007/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1007/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1008/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1008/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1009/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1009/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1010/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1010/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1011/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1011/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1012/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1012/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1013/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1013/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1015/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1015/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1016/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1016/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1017/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1017/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1019/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1019/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1021/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1021/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1023/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1023/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1024/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1024/syn/cortex+2mm+crblm.nii.gz Loading brain mask of output subject from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/aparc+aseg_mask.nii.gz Loading FA map of output subject from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit_FA.nii.gz Loading non-linear registration from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/syn_warp.m3z setting orig areas to linear transform determinant scaled 1.00 Reading morph inverse Reading /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/syn_warp.m3z.inv.x.mgz Reading /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/syn_warp.m3z.inv.y.mgz Reading /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/syn_warp.m3z.inv.z.mgz Loading non-linear registration source for output subject from /autofs/vast/freesurfer/centos7_x86_64/7.3.2/trctrain/hcp/MGH35_HCP_FA_template.nii.gz Loading affine registration from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/syn2diff.lta LTA registration format detected FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -3.375, ref det = -3.375 Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1001/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1006/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1007/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1008/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1009/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1010/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1011/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1012/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1013/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1015/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1016/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1017/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1019/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1021/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1023/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1024/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected INFO: Rejected 0 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Have 18655 total streamlines (min/mean/max length: 58/80/94) Loading list of excluded streamlines from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_cpts_all.bad.txt INFO: Found 1 streamlines to be excluded Processing pathway 1 of 2... INFO: Have 17044 non-truncated streamlines (min/mean/max length: 58/79/94) Computing path histograms INFO: Total streamline volume is 15257 voxels Finding outlier streamlines Updating streamline distance ranking INFO: Split streamlines into 23 segments Computing prior on underlying anatomy (all streamlines) Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.0705664 INFO: Points where local peaks in curvature occur are 69 81 78 (curv = 0.165236) 70 74 77 (curv = 0.388342) 76 75 66 (curv = 0.134653) 71 74 46 (curv = 0.123472) 62 69 34 (curv = 0.111669) INFO: Intermediate dominant points are 68 83 86 70 74 77 76 75 63 71 74 46 62 69 34 62 63 24 60 55 11 INFO: Final dominant points are 68 83 86 70 74 77 72 75 54 71 74 46 62 69 34 62 61 19 60 55 11 INFO: Selected control points are 68 83 86 72 76 75 74 75 55 70 74 46 62 68 34 62 61 19 60 55 11 INFO: Distances between consecutive points are 14 20 10 16 17 10 INFO: Selected control points in test subject's space are 81 83 71 84 75 60 84 71 42 80 68 34 73 60 24 73 51 10 72 46 4 INFO: Distances between consecutive points in test subject's space are 14 18 9 15 17 8 Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_* Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_cpts_7.nii.gz Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lh.cst_avg16_syn_bbr_cpts_7.nii.gz Done in 9.395 sec. Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1001/syn/rh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1006/syn/rh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1007/syn/rh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1008/syn/rh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1009/syn/rh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1010/syn/rh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1011/syn/rh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1012/syn/rh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1013/syn/rh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1015/syn/rh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1016/syn/rh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1017/syn/rh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1019/syn/rh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1021/syn/rh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1023/syn/rh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1024/syn/rh.cst.bbr.prep.trk Pre-sorted training .trk file detected INFO: Rejected 1 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Have 14468 total streamlines (min/mean/max length: 64/80/97) Loading list of excluded streamlines from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_cpts_all.bad.txt INFO: Found 1 streamlines to be excluded Processing pathway 2 of 2... INFO: Have 13054 non-truncated streamlines (min/mean/max length: 64/79/97) Computing path histograms INFO: Total streamline volume is 13429 voxels Finding outlier streamlines Updating streamline distance ranking INFO: Split streamlines into 23 segments Computing prior on underlying anatomy (all streamlines) Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.0460753 INFO: Points where local peaks in curvature occur are 48 73 79 (curv = 0.0515488) 43 74 68 (curv = 0.0652723) 43 75 61 (curv = 0.0784367) 45 73 55 (curv = 0.0603029) 50 73 40 (curv = 0.0607614) 54 69 36 (curv = 0.0580468) 56 68 31 (curv = 0.121945) 55 65 26 (curv = 0.0720297) INFO: Intermediate dominant points are 53 69 87 48 73 79 43 75 61 50 73 40 56 68 31 57 63 23 58 56 10 INFO: Final dominant points are 53 69 87 48 73 79 43 75 61 50 73 40 56 68 31 58 59 17 58 56 10 INFO: Selected control points are 53 69 87 48 73 78 43 74 61 50 72 41 56 67 31 57 60 18 58 56 10 INFO: Distances between consecutive points are 11 18 21 13 15 9 INFO: Selected control points in test subject's space are 65 69 73 60 71 63 56 70 48 62 66 30 68 59 20 69 50 9 70 46 3 INFO: Distances between consecutive points in test subject's space are 11 16 19 14 14 7 Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_* Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_cpts_7.nii.gz Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.cst_avg16_syn_bbr_cpts_7.nii.gz Done in 8.207 sec. dmri_train done #------------------------------------- trac-preproc finished without error at Thu Jul 13 11:05:14 EDT 2023 /usr/local/freesurfer/7.3.2//bin/dmri_paths --outdir /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr --dwi /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/data.nii.gz --grad /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/bvecs --bval /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/bvals --mask /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/aparc+aseg_mask.bbr.nii.gz --bpdir /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri.bedpostX --ntr 2 --fmin 0.05 --roi1 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_end1_dil.nii.gz --roi2 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_end2_dil.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2syn.lta --regnl /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/syn_warp.m3z --init /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lh.cst_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.cst_avg16_syn_bbr_cpts_7.txt --nprior /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all --lprior /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all --seg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/aparc+aseg+thalnuc.nii.gz --nb 200 --ns 7500 --nu 0 --nk 5 --sdp /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lh.cst_avg16_syn_bbr_cpts_7_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.cst_avg16_syn_bbr_cpts_7_std.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_paths --outdir /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr --dwi /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/data.nii.gz --grad /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/bvecs --bval /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/bvals --mask /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/aparc+aseg_mask.bbr.nii.gz --bpdir /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri.bedpostX --ntr 2 --fmin 0.05 --roi1 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_end1_dil.nii.gz --roi2 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_end2_dil.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2syn.lta --regnl /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/syn_warp.m3z --init /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lh.cst_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.cst_avg16_syn_bbr_cpts_7.txt --nprior /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all --lprior /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all --seg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/aparc+aseg+thalnuc.nii.gz --nb 200 --ns 7500 --nu 0 --nk 5 --sdp /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lh.cst_avg16_syn_bbr_cpts_7_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.cst_avg16_syn_bbr_cpts_7_std.txt sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Output directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr DWIs: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/data.nii.gz Gradients: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/bvecs B-values: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/bvals Mask: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/aparc+aseg_mask.bbr.nii.gz BEDPOST directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri.bedpostX Max number of tracts per voxel: 2 Tract volume fraction threshold: 0.05 Initial control point file: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lh.cst_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.cst_avg16_syn_bbr_cpts_7.txt End ROI 1: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_end1_dil.nii.gz End ROI 2: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_end2_dil.nii.gz Neighbor aseg prior: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all Neighbor aseg label ID list: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all Neighbor aseg prior set: 14 Local aseg prior: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all Local aseg label ID list: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all Local aseg prior set: 15 Segmentation map: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/aparc+aseg+thalnuc.nii.gz DWI-to-atlas affine registration: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2syn.lta DWI-to-atlas nonlinear registration: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/syn_warp.m3z Number of burn-in samples: 200 Number of post-burn-in samples: 7500 Keep every: 5-th sample Update proposal every: 0-th sample Initial proposal SD file: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lh.cst_avg16_syn_bbr_cpts_7_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.cst_avg16_syn_bbr_cpts_7_std.txt Loading DWIs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/data.nii.gz Loading mask from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/aparc+aseg_mask.bbr.nii.gz Loading BEDPOST parameter samples from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri.bedpostX Loading b-values from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/bvals Loading gradients from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/bvecs INFO: Found 28 baseline images (b = 5) out of a total of 398 frames INFO: Found 422308 voxels in brain mask INFO: Resolution of DWI space relative to base space is (1, 1, 1) Loading atlas reference volume from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_end1_dil.nii.gz Loading affine registration from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2syn.lta LTA registration format detected FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -3.375, ref det = -3.375 Loading non-linear registration from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/syn_warp.m3z setting orig areas to linear transform determinant scaled 1.00 Reading morph inverse Reading /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/syn_warp.m3z.inv.x.mgz Reading /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/syn_warp.m3z.inv.y.mgz Reading /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/syn_warp.m3z.inv.z.mgz Loading segmentation map from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/aparc+aseg+thalnuc.nii.gz Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lh.cst_avg16_syn_bbr_cpts_7.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/lh.cst_avg16_syn_bbr_cpts_7_std.txt Processing pathway 1 of 2... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr Done in 1373.62 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.cst_avg16_syn_bbr_cpts_7.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.cst_avg16_syn_bbr_cpts_7_std.txt Processing pathway 2 of 2... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr Done in 1501.92 sec. dmri_paths done fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/path.pd.nii.gz -thr 51.2000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/path.pd.nii.gz -thr 24.2000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/path.pd.nii.gz -thr 25.2000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/path.pd.nii.gz -thr 41.0000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/path.pd.nii.gz -thr 18.6000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/path.pd.nii.gz -thr 21.6000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/path.pd.nii.gz -thr 26.8000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/path.pd.nii.gz -thr 25.8000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/path.pd.nii.gz -thr 42.0000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/mcp_avg16_syn_bbr/path.pd.nii.gz -thr 40.6000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/mcp_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/mcp_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/path.pd.nii.gz -thr 69.0000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/path.pd.nii.gz -thr 71.4000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/path.pd.nii.gz -thr 87.4000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/path.pd.nii.gz -thr 94.2000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/path.pd.nii.gz -thr 50.4000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/path.pd.nii.gz -thr 92.8000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/path.pd.nii.gz -thr 115.6000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/path.pd.nii.gz -thr 232.8000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/path.pd.nii.gz -thr 52.8000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/path.pd.nii.gz -thr 68.6000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/path.pd.nii.gz -thr 32.4000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/path.pd.nii.gz -thr 280.6000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/path.pd.nii.gz -thr 84.0000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/path.pd.nii.gz -thr 68.2000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/path.pd.nii.gz -thr 82.2000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/path.pd.nii.gz -thr 39.6000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/tmp.nii.gz fslmaths 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/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/path.pd.nii.gz -thr 26.8000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/path.pd.nii.gz -thr 47.2000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/path.pd.nii.gz -thr 53.4000000 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/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/path.pd.nii.gz -thr 45.0000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/path.pd.nii.gz -thr 54.2000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/tmp.nii.gz New invocation of trac-preproc erd37 compute-0-3.nmr.mgh.harvard.edu Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse 7340032 kbytes descriptors 32768 memorylocked unlimited maxproc 127904 maxlocks unlimited maxsignal 127904 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 32778656 3426080 6880092 50036 22472484 28878408 Swap: 67108860 49672 67059188 #------------------------------------- /usr/local/freesurfer/7.3.2//bin/trac-preproc #------------------------------------- #@# Priors Thu Jul 13 11:55:50 EDT 2023 /usr/local/freesurfer/7.3.2//bin/dmri_train --outdir /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn --out rh.cst_avg16_syn_bbr --slist /scratch/19738367/tmp.vXkL0l.16.sub-BANDA002.txt --trk syn/rh.cst.bbr.prep.trk --seg syn/aparc+aseg+thalnuc.nii.gz --cmask syn/cortex+2mm+crblm.nii.gz --lmask 16 --bmask /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/aparc+aseg_mask.nii.gz --fa /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit_FA.nii.gz --cptdir /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff --regnl /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/syn_warp.m3z --refnl /usr/local/freesurfer/7.3.2//trctrain/hcp/MGH35_HCP_FA_template.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/syn2diff.lta --ncpts 7 --xstr --trunc --aprior 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_train --outdir /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn --out rh.cst_avg16_syn_bbr --slist /scratch/19738367/tmp.vXkL0l.16.sub-BANDA002.txt --trk syn/rh.cst.bbr.prep.trk --seg syn/aparc+aseg+thalnuc.nii.gz --cmask syn/cortex+2mm+crblm.nii.gz --lmask 16 --bmask /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/aparc+aseg_mask.nii.gz --fa /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit_FA.nii.gz --cptdir /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff --regnl /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/syn_warp.m3z --refnl /usr/local/freesurfer/7.3.2//trctrain/hcp/MGH35_HCP_FA_template.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/syn2diff.lta --ncpts 7 --xstr --trunc --aprior sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Output directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn Output directory in test subject's space: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff Training subject directory list: /scratch/19738367/tmp.vXkL0l.16.sub-BANDA002.txt Location of streamline files relative to base: syn/rh.cst.bbr.prep.trk Location of cortex masks relative to base: syn/cortex+2mm+crblm.nii.gz Label ID's from aparc+aseg to add to cortex mask: 16 Location of aparc+aseg's relative to base: syn/aparc+aseg+thalnuc.nii.gz Brain mask for output subject: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/aparc+aseg_mask.nii.gz FA map for output subject: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit_FA.nii.gz Affine registration from atlas to base for output subject: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/syn2diff.lta Nonlinear registration from atlas to base for output subject: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/syn_warp.m3z Nonlinear registration source reference for output subject: /autofs/vast/freesurfer/centos7_x86_64/7.3.2/trctrain/hcp/MGH35_HCP_FA_template.nii.gz Number of control points for initial spline: 7 Exclude previously chosen center streamlines: 1 Use truncated streamlines: 1 Compute priors on underlying anatomy: 1 Compute priors on shape: 0 Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1001/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1001/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1006/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1006/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1007/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1007/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1008/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1008/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1009/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1009/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1010/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1010/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1011/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1011/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1012/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1012/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1013/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1013/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1015/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1015/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1016/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1016/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1017/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1017/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1019/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1019/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1021/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1021/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1023/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1023/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1024/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1024/syn/cortex+2mm+crblm.nii.gz Loading brain mask of output subject from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/aparc+aseg_mask.nii.gz Loading FA map of output subject from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit_FA.nii.gz Loading non-linear registration from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/syn_warp.m3z setting orig areas to linear transform determinant scaled 1.00 Reading morph inverse Reading /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/syn_warp.m3z.inv.x.mgz Reading /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/syn_warp.m3z.inv.y.mgz Reading /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/syn_warp.m3z.inv.z.mgz Loading non-linear registration source for output subject from /autofs/vast/freesurfer/centos7_x86_64/7.3.2/trctrain/hcp/MGH35_HCP_FA_template.nii.gz Loading affine registration from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/syn2diff.lta LTA registration format detected FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -3.375, ref det = -3.375 Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1001/syn/rh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1006/syn/rh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1007/syn/rh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1008/syn/rh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1009/syn/rh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1010/syn/rh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1011/syn/rh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1012/syn/rh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1013/syn/rh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1015/syn/rh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1016/syn/rh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1017/syn/rh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1019/syn/rh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1021/syn/rh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1023/syn/rh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1024/syn/rh.cst.bbr.prep.trk Pre-sorted training .trk file detected INFO: Rejected 1 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Have 14468 total streamlines (min/mean/max length: 64/80/97) Loading list of excluded streamlines from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_cpts_all.bad.txt INFO: Found 2 streamlines to be excluded Processing pathway 1 of 1... INFO: Have 13054 non-truncated streamlines (min/mean/max length: 64/79/97) Computing path histograms INFO: Total streamline volume is 13429 voxels Finding outlier streamlines Updating streamline distance ranking INFO: Split streamlines into 23 segments Computing prior on underlying anatomy (all streamlines) Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.048189 INFO: Points where local peaks in curvature occur are 47 72 75 (curv = 0.0646993) 44 74 69 (curv = 0.0866778) 43 73 65 (curv = 0.0900639) 45 72 57 (curv = 0.0956453) 46 73 48 (curv = 0.0684447) 52 70 39 (curv = 0.0694279) 55 65 24 (curv = 0.0579518) 58 60 18 (curv = 0.0589828) INFO: Intermediate dominant points are 48 70 87 43 73 65 45 72 57 46 73 48 52 70 39 58 60 18 58 55 9 INFO: Final dominant points are 48 70 87 43 73 65 45 72 57 48 73 45 52 70 39 58 60 18 58 55 9 INFO: Selected control points are 48 70 87 44 74 65 44 73 57 48 73 45 52 70 38 57 61 19 58 55 9 INFO: Distances between consecutive points are 23 8 13 9 22 12 INFO: Selected control points in test subject's space are 60 70 74 56 71 51 56 69 44 61 67 33 64 63 27 69 51 10 70 46 3 INFO: Distances between consecutive points in test subject's space are 23 7 12 8 21 9 Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_* Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_cpts_7.nii.gz Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.cst_avg16_syn_bbr_cpts_7.nii.gz Done in 8.105 sec. dmri_train done #------------------------------------- trac-preproc finished without error at Thu Jul 13 11:56:07 EDT 2023 /usr/local/freesurfer/7.3.2//bin/dmri_paths --outdir /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr --dwi /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/data.nii.gz --grad /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/bvecs --bval /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/bvals --mask /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/aparc+aseg_mask.bbr.nii.gz --bpdir /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri.bedpostX --ntr 2 --fmin 0.05 --roi1 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_end1_dil.nii.gz --roi2 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_end2_dil.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2syn.lta --regnl /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/syn_warp.m3z --init /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.cst_avg16_syn_bbr_cpts_7.txt --nprior /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all --lprior /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all --seg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/aparc+aseg+thalnuc.nii.gz --nb 200 --ns 7500 --nu 0 --nk 5 --sdp /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.cst_avg16_syn_bbr_cpts_7_std.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_paths --outdir /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr --dwi /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/data.nii.gz --grad /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/bvecs --bval /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/bvals --mask /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/aparc+aseg_mask.bbr.nii.gz --bpdir /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri.bedpostX --ntr 2 --fmin 0.05 --roi1 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_end1_dil.nii.gz --roi2 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_end2_dil.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2syn.lta --regnl /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/syn_warp.m3z --init /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.cst_avg16_syn_bbr_cpts_7.txt --nprior /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all --lprior /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all --seg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/aparc+aseg+thalnuc.nii.gz --nb 200 --ns 7500 --nu 0 --nk 5 --sdp /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.cst_avg16_syn_bbr_cpts_7_std.txt sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Output directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr DWIs: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/data.nii.gz Gradients: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/bvecs B-values: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/bvals Mask: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/aparc+aseg_mask.bbr.nii.gz BEDPOST directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri.bedpostX Max number of tracts per voxel: 2 Tract volume fraction threshold: 0.05 Initial control point file: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.cst_avg16_syn_bbr_cpts_7.txt End ROI 1: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_end1_dil.nii.gz End ROI 2: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_end2_dil.nii.gz Neighbor aseg prior: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all Neighbor aseg label ID list: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all Neighbor aseg prior set: 14 Local aseg prior: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all Local aseg label ID list: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all Local aseg prior set: 15 Segmentation map: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/aparc+aseg+thalnuc.nii.gz DWI-to-atlas affine registration: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2syn.lta DWI-to-atlas nonlinear registration: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/syn_warp.m3z Number of burn-in samples: 200 Number of post-burn-in samples: 7500 Keep every: 5-th sample Update proposal every: 0-th sample Initial proposal SD file: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.cst_avg16_syn_bbr_cpts_7_std.txt Loading DWIs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/data.nii.gz Loading mask from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/aparc+aseg_mask.bbr.nii.gz Loading BEDPOST parameter samples from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri.bedpostX Loading b-values from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/bvals Loading gradients from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/bvecs INFO: Found 28 baseline images (b = 5) out of a total of 398 frames INFO: Found 422308 voxels in brain mask INFO: Resolution of DWI space relative to base space is (1, 1, 1) Loading atlas reference volume from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_end1_dil.nii.gz Loading affine registration from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2syn.lta LTA registration format detected FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -3.375, ref det = -3.375 Loading non-linear registration from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/syn_warp.m3z setting orig areas to linear transform determinant scaled 1.00 Reading morph inverse Reading /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/syn_warp.m3z.inv.x.mgz Reading /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/syn_warp.m3z.inv.y.mgz Reading /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/syn_warp.m3z.inv.z.mgz Loading segmentation map from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/aparc+aseg+thalnuc.nii.gz Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.cst_avg16_syn_bbr_cpts_7.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dlabel/diff/rh.cst_avg16_syn_bbr_cpts_7_std.txt Processing pathway 1 of 1... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr Done in 1482.73 sec. dmri_paths done fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/path.pd.nii.gz -thr 51.2000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/path.pd.nii.gz -thr 24.2000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/path.pd.nii.gz -thr 25.2000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/path.pd.nii.gz -thr 41.0000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/path.pd.nii.gz -thr 18.6000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/path.pd.nii.gz -thr 21.6000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/path.pd.nii.gz -thr 26.8000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/path.pd.nii.gz -thr 25.8000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/path.pd.nii.gz -thr 42.0000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/mcp_avg16_syn_bbr/path.pd.nii.gz -thr 40.6000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/mcp_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/mcp_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/path.pd.nii.gz -thr 69.0000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/path.pd.nii.gz -thr 71.4000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/path.pd.nii.gz -thr 87.4000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/path.pd.nii.gz -thr 94.2000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/path.pd.nii.gz -thr 50.4000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/path.pd.nii.gz -thr 92.8000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/path.pd.nii.gz -thr 115.6000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/path.pd.nii.gz -thr 232.8000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/path.pd.nii.gz -thr 52.8000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/path.pd.nii.gz -thr 68.6000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/path.pd.nii.gz -thr 32.4000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/path.pd.nii.gz -thr 35.4000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/path.pd.nii.gz -thr 84.0000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/path.pd.nii.gz -thr 68.2000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/path.pd.nii.gz -thr 82.2000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/path.pd.nii.gz -thr 39.6000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/path.pd.nii.gz -thr 42.8000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/path.pd.nii.gz -thr 50.4000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/path.pd.nii.gz -thr 38.0000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/path.pd.nii.gz -thr 26.8000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/path.pd.nii.gz -thr 47.2000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/path.pd.nii.gz -thr 53.4000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/path.pd.nii.gz -thr 66.4000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/path.pd.nii.gz -thr 72.2000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/path.pd.nii.gz -thr 51.8000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/path.pd.nii.gz -thr 55.0000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/path.pd.nii.gz -thr 57.6000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/path.pd.nii.gz -thr 46.2000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/path.pd.nii.gz -thr 38.0000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/path.pd.nii.gz -thr 78.6000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/path.pd.nii.gz -thr 45.0000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/path.pd.nii.gz -thr 54.2000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/tmp.nii.gz /usr/local/freesurfer/7.3.2//bin/dmri_trk2trk --in /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/acomm.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/cc.bodyc.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/cc.bodyp.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/cc.bodypf.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/cc.bodypm.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/cc.bodyt.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/cc.genu.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/cc.rostrum.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/cc.splenium.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/mcp.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.af.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.af.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.ar.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.ar.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.atr.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.atr.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.cbd.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.cbd.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.cbv.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.cbv.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.cst.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.cst.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.emc.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.emc.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.fat.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.fat.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.fx.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.fx.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.ilf.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.ilf.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.mlf.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.mlf.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.or.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.or.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.slf1.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.slf1.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.slf2.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.slf2.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.slf3.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.slf3.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.uf.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.uf.mean.trk --inref /usr/local/freesurfer/7.3.2//trctrain/hcp/MGH35_HCP_FA_template.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2syn.lta --regnl /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/syn_warp.m3z --inv --smooth --outasc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/mcp_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/path.ref.txt --outref /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit_FA.nii.gz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_trk2trk --in /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/acomm.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/cc.bodyc.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/cc.bodyp.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/cc.bodypf.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/cc.bodypm.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/cc.bodyt.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/cc.genu.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/cc.rostrum.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/cc.splenium.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/mcp.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.af.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.af.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.ar.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.ar.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.atr.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.atr.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.cbd.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.cbd.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.cbv.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.cbv.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.cst.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.cst.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.emc.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.emc.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.fat.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.fat.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.fx.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.fx.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.ilf.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.ilf.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.mlf.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.mlf.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.or.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.or.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.slf1.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.slf1.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.slf2.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.slf2.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.slf3.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.slf3.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.uf.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.uf.mean.trk --inref /usr/local/freesurfer/7.3.2//trctrain/hcp/MGH35_HCP_FA_template.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2syn.lta --regnl /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/syn_warp.m3z --inv --smooth --outasc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/mcp_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/path.ref.txt --outref /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit_FA.nii.gz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Input .trk files: /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/acomm.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/cc.bodyc.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/cc.bodyp.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/cc.bodypf.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/cc.bodypm.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/cc.bodyt.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/cc.genu.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/cc.rostrum.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/cc.splenium.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/mcp.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.af.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.af.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.ar.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.ar.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.atr.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.atr.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.cbd.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.cbd.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.cbv.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.cbv.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.cst.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.cst.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.emc.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.emc.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.fat.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.fat.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.fx.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.fx.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.ilf.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.ilf.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.mlf.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.mlf.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.or.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.or.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.slf1.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.slf1.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.slf2.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.slf2.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.slf3.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.slf3.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.uf.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.uf.mean.trk Output text files: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/mcp_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/path.ref.txt Input reference: /autofs/vast/freesurfer/centos7_x86_64/7.3.2/trctrain/hcp/MGH35_HCP_FA_template.nii.gz Output reference: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit_FA.nii.gz Affine registration: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2syn.lta Nonlinear registration: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/syn_warp.m3z Invert registration: 1 Fill gaps between points: 0 Smoothing streamlines Loading affine registration from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2syn.lta LTA registration format detected FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -3.375, ref det = -3.375 Loading non-linear registration from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/syn_warp.m3z setting orig areas to linear transform determinant scaled 1.00 Reading morph inverse Reading /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/syn_warp.m3z.inv.x.mgz Reading /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/syn_warp.m3z.inv.y.mgz Reading /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/syn_warp.m3z.inv.z.mgz Processing input file 1 of 42... Done in 0.033 sec. Processing input file 2 of 42... Done in 0.03 sec. Processing input file 3 of 42... Done in 0.031 sec. Processing input file 4 of 42... Done in 0.031 sec. Processing input file 5 of 42... Done in 0.03 sec. Processing input file 6 of 42... Done in 0.031 sec. Processing input file 7 of 42... Done in 0.03 sec. Processing input file 8 of 42... Done in 0.03 sec. Processing input file 9 of 42... Done in 0.03 sec. Processing input file 10 of 42... Done in 0.03 sec. Processing input file 11 of 42... Done in 0.03 sec. Processing input file 12 of 42... Done in 0.03 sec. Processing input file 13 of 42... Done in 0.03 sec. Processing input file 14 of 42... Done in 0.03 sec. Processing input file 15 of 42... Done in 0.029 sec. Processing input file 16 of 42... Done in 0.032 sec. Processing input file 17 of 42... Done in 0.032 sec. Processing input file 18 of 42... Done in 0.03 sec. Processing input file 19 of 42... Done in 0.03 sec. Processing input file 20 of 42... 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Done in 0.028 sec. dmri_trk2trk done /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit --path acomm --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit --path acomm --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit Pathway name: acomm Subject name: sub-BANDA002 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr... Done in 1.713 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 39098 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt1.surf.mgz Dim: 128775 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt1.surf.mgz Thu Jul 13 12:24:26 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/tmp.BsxMAg/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/tmp.BsxMAg/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/tmp.BsxMAg/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/tmp.BsxMAg/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/tmp.BsxMAg/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/tmp.BsxMAg/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/tmp.BsxMAg/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/tmp.BsxMAg/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/tmp.BsxMAg/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 1782 values in range Counting number of voxels in first frame Found 1781 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 1781 1781.000000 128775 1.383032 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA002 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: 33.24 13.46 -14.68 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Found 1782 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA002 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 1782 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1782 nlabel points Performing mapping from target back to the source label 128775 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt1.surf.label 3505 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt1.surf.stats sub-BANDA002 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white... Using TH3 vertex volume calc Total face volume 270308 Total vertex volume 266908 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt1.surf.label" number of vertices = 2300 total surface area = 1611 mm^2 total gray matter volume = 8612 mm^3 average cortical thickness = 3.757 mm +- 0.802 mm average integrated rectified mean curvature = 0.152 average integrated rectified Gaussian curvature = 0.038 folding index = 51 intrinsic curvature index = 3.4 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 38988 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt2.surf.mgz Dim: 129240 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt2.surf.mgz Thu Jul 13 12:24:49 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/tmp.FAoMkG/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/tmp.FAoMkG/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/tmp.FAoMkG/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/tmp.FAoMkG/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/tmp.FAoMkG/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/tmp.FAoMkG/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/tmp.FAoMkG/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/tmp.FAoMkG/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/tmp.FAoMkG/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 1389 values in range Counting number of voxels in first frame Found 1388 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 1388 1388.000000 129240 1.073971 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA002 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: -32.18 9.30 -18.80 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Found 1389 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA002 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 1389 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1389 nlabel points Performing mapping from target back to the source label 129240 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt2.surf.label 3107 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt2.surf.stats sub-BANDA002 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white... Using TH3 vertex volume calc Total face volume 278288 Total vertex volume 274927 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt2.surf.label" number of vertices = 1916 total surface area = 1351 mm^2 total gray matter volume = 7162 mm^3 average cortical thickness = 3.713 mm +- 0.749 mm average integrated rectified mean curvature = 0.155 average integrated rectified Gaussian curvature = 0.048 folding index = 39 intrinsic curvature index = 4.0 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit --path cc.bodyc --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit --path cc.bodyc --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit Pathway name: cc.bodyc Subject name: sub-BANDA002 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr... Done in 0.911 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 39098 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.mgz Dim: 128775 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.mgz Thu Jul 13 12:25:12 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/tmp.pZD9IG/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/tmp.pZD9IG/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/tmp.pZD9IG/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/tmp.pZD9IG/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/tmp.pZD9IG/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/tmp.pZD9IG/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/tmp.pZD9IG/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/tmp.pZD9IG/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/tmp.pZD9IG/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 3183 values in range Counting number of voxels in first frame Found 3182 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 3182 3182.000000 128775 2.470977 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA002 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: 18.06 -27.44 49.99 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Found 3183 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA002 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 3183 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3183 nlabel points Performing mapping from target back to the source label 128775 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.label 14732 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.stats sub-BANDA002 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white... Using TH3 vertex volume calc Total face volume 270308 Total vertex volume 266908 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.label" number of vertices = 8964 total surface area = 5905 mm^2 total gray matter volume = 17339 mm^3 average cortical thickness = 2.688 mm +- 0.626 mm average integrated rectified mean curvature = 0.106 average integrated rectified Gaussian curvature = 0.020 folding index = 79 intrinsic curvature index = 7.2 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 38988 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.mgz Dim: 129240 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.mgz Thu Jul 13 12:25:33 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/tmp.uJDYMQ/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/tmp.uJDYMQ/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/tmp.uJDYMQ/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/tmp.uJDYMQ/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/tmp.uJDYMQ/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/tmp.uJDYMQ/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/tmp.uJDYMQ/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/tmp.uJDYMQ/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/tmp.uJDYMQ/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 3004 values in range Counting number of voxels in first frame Found 3003 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 3003 3003.000000 129240 2.323584 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA002 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: -24.51 -30.12 46.63 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Found 3004 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA002 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 3004 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3004 nlabel points Performing mapping from target back to the source label 129240 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.label 14014 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.stats sub-BANDA002 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white... Using TH3 vertex volume calc Total face volume 278288 Total vertex volume 274927 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.label" number of vertices = 8288 total surface area = 5300 mm^2 total gray matter volume = 15621 mm^3 average cortical thickness = 2.725 mm +- 0.604 mm average integrated rectified mean curvature = 0.101 average integrated rectified Gaussian curvature = 0.018 folding index = 69 intrinsic curvature index = 5.8 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit --path cc.bodyp --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit --path cc.bodyp --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit Pathway name: cc.bodyp Subject name: sub-BANDA002 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr... Done in 0.93 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 39098 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.mgz Dim: 128775 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.mgz Thu Jul 13 12:25:53 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/tmp.cCtPZI/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/tmp.cCtPZI/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/tmp.cCtPZI/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/tmp.cCtPZI/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/tmp.cCtPZI/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/tmp.cCtPZI/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/tmp.cCtPZI/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/tmp.cCtPZI/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/tmp.cCtPZI/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 3865 values in range Counting number of voxels in first frame Found 3864 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 3864 3864.000000 128775 3.000582 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA002 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: 17.62 -56.40 39.14 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Found 3865 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA002 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 3865 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3865 nlabel points Performing mapping from target back to the source label 128775 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.label 20568 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.stats sub-BANDA002 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white... Using TH3 vertex volume calc Total face volume 270308 Total vertex volume 266908 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.label" number of vertices = 12388 total surface area = 8238 mm^2 total gray matter volume = 23353 mm^3 average cortical thickness = 2.555 mm +- 0.563 mm average integrated rectified mean curvature = 0.125 average integrated rectified Gaussian curvature = 0.025 folding index = 160 intrinsic curvature index = 12.8 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 38988 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.mgz Dim: 129240 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.mgz Thu Jul 13 12:26:13 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/tmp.3L17bq/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/tmp.3L17bq/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/tmp.3L17bq/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/tmp.3L17bq/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/tmp.3L17bq/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/tmp.3L17bq/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/tmp.3L17bq/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/tmp.3L17bq/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/tmp.3L17bq/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 3570 values in range Counting number of voxels in first frame Found 3569 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 3569 3569.000000 129240 2.761529 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA002 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: -21.03 -56.15 37.04 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Found 3570 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA002 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 3570 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3570 nlabel points Performing mapping from target back to the source label 129240 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.label 20936 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.stats sub-BANDA002 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white... Using TH3 vertex volume calc Total face volume 278288 Total vertex volume 274927 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.label" number of vertices = 11649 total surface area = 7797 mm^2 total gray matter volume = 22655 mm^3 average cortical thickness = 2.633 mm +- 0.570 mm average integrated rectified mean curvature = 0.125 average integrated rectified Gaussian curvature = 0.025 folding index = 152 intrinsic curvature index = 12.2 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit --path cc.bodypf --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit --path cc.bodypf --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit Pathway name: cc.bodypf Subject name: sub-BANDA002 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr... Done in 0.882 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 39098 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.mgz Dim: 128775 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.mgz Thu Jul 13 12:26:34 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/tmp.OOklxD/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/tmp.OOklxD/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/tmp.OOklxD/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/tmp.OOklxD/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/tmp.OOklxD/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/tmp.OOklxD/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/tmp.OOklxD/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/tmp.OOklxD/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/tmp.OOklxD/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2671 values in range Counting number of voxels in first frame Found 2670 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 2670 2670.000000 128775 2.073384 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA002 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: 11.26 22.46 45.86 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Found 2671 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA002 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2671 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2671 nlabel points Performing mapping from target back to the source label 128775 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.label 12862 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.stats sub-BANDA002 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white... Using TH3 vertex volume calc Total face volume 270308 Total vertex volume 266908 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.label" number of vertices = 8227 total surface area = 5548 mm^2 total gray matter volume = 18703 mm^3 average cortical thickness = 2.917 mm +- 0.619 mm average integrated rectified mean curvature = 0.128 average integrated rectified Gaussian curvature = 0.030 folding index = 112 intrinsic curvature index = 10.6 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 38988 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.mgz Dim: 129240 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.mgz Thu Jul 13 12:26:53 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/tmp.00dQka/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/tmp.00dQka/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/tmp.00dQka/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/tmp.00dQka/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/tmp.00dQka/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/tmp.00dQka/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/tmp.00dQka/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/tmp.00dQka/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/tmp.00dQka/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2394 values in range Counting number of voxels in first frame Found 2393 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 2393 2393.000000 129240 1.851594 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA002 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: -21.86 21.65 42.84 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Found 2394 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA002 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2394 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2394 nlabel points Performing mapping from target back to the source label 129240 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.label 13366 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.stats sub-BANDA002 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white... Using TH3 vertex volume calc Total face volume 278288 Total vertex volume 274927 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.label" number of vertices = 8421 total surface area = 5595 mm^2 total gray matter volume = 20850 mm^3 average cortical thickness = 3.131 mm +- 0.667 mm average integrated rectified mean curvature = 0.127 average integrated rectified Gaussian curvature = 0.028 folding index = 112 intrinsic curvature index = 9.8 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit --path cc.bodypm --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit --path cc.bodypm --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit Pathway name: cc.bodypm Subject name: sub-BANDA002 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr... Done in 0.893 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 39098 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.mgz Dim: 128775 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.mgz Thu Jul 13 12:27:13 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/tmp.bXxpFQ/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/tmp.bXxpFQ/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/tmp.bXxpFQ/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/tmp.bXxpFQ/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/tmp.bXxpFQ/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/tmp.bXxpFQ/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/tmp.bXxpFQ/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/tmp.bXxpFQ/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/tmp.bXxpFQ/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2675 values in range Counting number of voxels in first frame Found 2674 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 2674 2674.000000 128775 2.076490 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA002 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: 11.82 -2.52 53.69 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Found 2675 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA002 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2675 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2675 nlabel points Performing mapping from target back to the source label 128775 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.label 11432 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.stats sub-BANDA002 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white... Using TH3 vertex volume calc Total face volume 270308 Total vertex volume 266908 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.label" number of vertices = 7122 total surface area = 4919 mm^2 total gray matter volume = 18002 mm^3 average cortical thickness = 3.124 mm +- 0.604 mm average integrated rectified mean curvature = 0.123 average integrated rectified Gaussian curvature = 0.022 folding index = 82 intrinsic curvature index = 6.8 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 38988 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.mgz Dim: 129240 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.mgz Thu Jul 13 12:27:34 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/tmp.aFJkCx/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/tmp.aFJkCx/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/tmp.aFJkCx/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/tmp.aFJkCx/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/tmp.aFJkCx/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/tmp.aFJkCx/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/tmp.aFJkCx/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/tmp.aFJkCx/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/tmp.aFJkCx/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2908 values in range Counting number of voxels in first frame Found 2907 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 2907 2907.000000 129240 2.249304 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA002 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: -18.92 -6.23 53.72 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Found 2908 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA002 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2908 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2908 nlabel points Performing mapping from target back to the source label 129240 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.label 10325 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.stats sub-BANDA002 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white... Using TH3 vertex volume calc Total face volume 278288 Total vertex volume 274927 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.label" number of vertices = 6876 total surface area = 4638 mm^2 total gray matter volume = 17852 mm^3 average cortical thickness = 3.225 mm +- 0.604 mm average integrated rectified mean curvature = 0.119 average integrated rectified Gaussian curvature = 0.024 folding index = 78 intrinsic curvature index = 6.4 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit --path cc.bodyt --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit --path cc.bodyt --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit Pathway name: cc.bodyt Subject name: sub-BANDA002 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr... Done in 1.042 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 39098 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.mgz Dim: 128775 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.mgz Thu Jul 13 12:27:55 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/tmp.8Lw0Up/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/tmp.8Lw0Up/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/tmp.8Lw0Up/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/tmp.8Lw0Up/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/tmp.8Lw0Up/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/tmp.8Lw0Up/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/tmp.8Lw0Up/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/tmp.8Lw0Up/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/tmp.8Lw0Up/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2357 values in range Counting number of voxels in first frame Found 2356 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 2356 2356.000000 128775 1.829548 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA002 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: 49.81 -16.12 9.35 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Found 2357 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA002 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2357 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2357 nlabel points Performing mapping from target back to the source label 128775 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.label 10771 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.stats sub-BANDA002 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white... Using TH3 vertex volume calc Total face volume 270308 Total vertex volume 266908 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.label" number of vertices = 5813 total surface area = 3825 mm^2 total gray matter volume = 14123 mm^3 average cortical thickness = 3.047 mm +- 0.649 mm average integrated rectified mean curvature = 0.115 average integrated rectified Gaussian curvature = 0.023 folding index = 73 intrinsic curvature index = 5.2 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 38988 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.mgz Dim: 129240 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.mgz Thu Jul 13 12:28:14 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/tmp.wKgoO5/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/tmp.wKgoO5/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/tmp.wKgoO5/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/tmp.wKgoO5/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/tmp.wKgoO5/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/tmp.wKgoO5/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/tmp.wKgoO5/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/tmp.wKgoO5/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/tmp.wKgoO5/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2720 values in range Counting number of voxels in first frame Found 2719 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 2719 2719.000000 129240 2.103838 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA002 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: -46.38 -30.29 -2.97 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Found 2720 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA002 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2720 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2720 nlabel points Performing mapping from target back to the source label 129240 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.label 12647 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.stats sub-BANDA002 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white... Using TH3 vertex volume calc Total face volume 278288 Total vertex volume 274927 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.label" number of vertices = 7453 total surface area = 4856 mm^2 total gray matter volume = 16576 mm^3 average cortical thickness = 3.026 mm +- 0.691 mm average integrated rectified mean curvature = 0.117 average integrated rectified Gaussian curvature = 0.022 folding index = 94 intrinsic curvature index = 6.7 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit --path cc.genu --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit --path cc.genu --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit Pathway name: cc.genu Subject name: sub-BANDA002 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr... Done in 0.852 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 39098 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.mgz Dim: 128775 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.mgz Thu Jul 13 12:28:34 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/tmp.68yZxy/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/tmp.68yZxy/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/tmp.68yZxy/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/tmp.68yZxy/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/tmp.68yZxy/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/tmp.68yZxy/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/tmp.68yZxy/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/tmp.68yZxy/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/tmp.68yZxy/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2582 values in range Counting number of voxels in first frame Found 2581 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 2581 2581.000000 128775 2.004271 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA002 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: 17.43 42.22 31.63 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Found 2582 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA002 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2582 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2582 nlabel points Performing mapping from target back to the source label 128775 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.label 12264 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.stats sub-BANDA002 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white... Using TH3 vertex volume calc Total face volume 270308 Total vertex volume 266908 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.label" number of vertices = 7434 total surface area = 5049 mm^2 total gray matter volume = 17229 mm^3 average cortical thickness = 2.863 mm +- 0.653 mm average integrated rectified mean curvature = 0.142 average integrated rectified Gaussian curvature = 0.036 folding index = 131 intrinsic curvature index = 11.5 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 38988 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.mgz Dim: 129240 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.mgz Thu Jul 13 12:28:54 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/tmp.OLyldY/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/tmp.OLyldY/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/tmp.OLyldY/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/tmp.OLyldY/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/tmp.OLyldY/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/tmp.OLyldY/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/tmp.OLyldY/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/tmp.OLyldY/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/tmp.OLyldY/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2642 values in range Counting number of voxels in first frame Found 2641 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 2641 2641.000000 129240 2.043485 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA002 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: -24.57 38.51 28.94 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Found 2642 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA002 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2642 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2642 nlabel points Performing mapping from target back to the source label 129240 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.label 12664 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.stats sub-BANDA002 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white... Using TH3 vertex volume calc Total face volume 278288 Total vertex volume 274927 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.label" number of vertices = 8321 total surface area = 5593 mm^2 total gray matter volume = 19252 mm^3 average cortical thickness = 2.963 mm +- 0.665 mm average integrated rectified mean curvature = 0.139 average integrated rectified Gaussian curvature = 0.035 folding index = 137 intrinsic curvature index = 12.0 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit --path cc.rostrum --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit --path cc.rostrum --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit Pathway name: cc.rostrum Subject name: sub-BANDA002 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr... Done in 0.845 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 39098 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.mgz Dim: 128775 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.mgz Thu Jul 13 12:29:14 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/tmp.Wuoc4w/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/tmp.Wuoc4w/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/tmp.Wuoc4w/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/tmp.Wuoc4w/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/tmp.Wuoc4w/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/tmp.Wuoc4w/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/tmp.Wuoc4w/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/tmp.Wuoc4w/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/tmp.Wuoc4w/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 1950 values in range Counting number of voxels in first frame Found 1949 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 1949 1949.000000 128775 1.513493 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA002 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: 8.25 47.59 20.25 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Found 1950 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA002 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 1950 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1950 nlabel points Performing mapping from target back to the source label 128775 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.label 6048 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.stats sub-BANDA002 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white... Using TH3 vertex volume calc Total face volume 270308 Total vertex volume 266908 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.label" number of vertices = 3953 total surface area = 2674 mm^2 total gray matter volume = 9528 mm^3 average cortical thickness = 2.998 mm +- 0.708 mm average integrated rectified mean curvature = 0.150 average integrated rectified Gaussian curvature = 0.038 folding index = 82 intrinsic curvature index = 6.2 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 38988 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.mgz Dim: 129240 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.mgz Thu Jul 13 12:29:33 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/tmp.UpxUSJ/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/tmp.UpxUSJ/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/tmp.UpxUSJ/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/tmp.UpxUSJ/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/tmp.UpxUSJ/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/tmp.UpxUSJ/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/tmp.UpxUSJ/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/tmp.UpxUSJ/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/tmp.UpxUSJ/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2178 values in range Counting number of voxels in first frame Found 2177 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 2177 2177.000000 129240 1.684463 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA002 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: -15.16 46.90 15.26 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Found 2178 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA002 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2178 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2178 nlabel points Performing mapping from target back to the source label 129240 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.label 6351 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.stats sub-BANDA002 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white... Using TH3 vertex volume calc Total face volume 278288 Total vertex volume 274927 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.label" number of vertices = 4378 total surface area = 2991 mm^2 total gray matter volume = 10969 mm^3 average cortical thickness = 2.897 mm +- 0.678 mm average integrated rectified mean curvature = 0.149 average integrated rectified Gaussian curvature = 0.037 folding index = 83 intrinsic curvature index = 6.5 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit --path cc.splenium --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit --path cc.splenium --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit Pathway name: cc.splenium Subject name: sub-BANDA002 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr... Done in 0.916 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 39098 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.mgz Dim: 128775 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.mgz Thu Jul 13 12:29:54 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/tmp.OZMEuc/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/tmp.OZMEuc/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/tmp.OZMEuc/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/tmp.OZMEuc/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/tmp.OZMEuc/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/tmp.OZMEuc/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/tmp.OZMEuc/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/tmp.OZMEuc/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/tmp.OZMEuc/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 3642 values in range Counting number of voxels in first frame Found 3641 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 3641 3641.000000 128775 2.827412 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA002 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: 23.63 -77.63 13.16 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Found 3642 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA002 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 3642 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3642 nlabel points Performing mapping from target back to the source label 128775 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.label 15120 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.stats sub-BANDA002 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white... Using TH3 vertex volume calc Total face volume 270308 Total vertex volume 266908 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.label" number of vertices = 9803 total surface area = 6281 mm^2 total gray matter volume = 16193 mm^3 average cortical thickness = 2.418 mm +- 0.558 mm average integrated rectified mean curvature = 0.125 average integrated rectified Gaussian curvature = 0.026 folding index = 122 intrinsic curvature index = 10.3 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 38988 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.mgz Dim: 129240 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.mgz Thu Jul 13 12:30:13 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/tmp.bFW3pU/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/tmp.bFW3pU/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/tmp.bFW3pU/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/tmp.bFW3pU/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/tmp.bFW3pU/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/tmp.bFW3pU/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/tmp.bFW3pU/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/tmp.bFW3pU/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/tmp.bFW3pU/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2780 values in range Counting number of voxels in first frame Found 2779 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 2779 2779.000000 129240 2.150263 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA002 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: -18.38 -78.51 13.72 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Found 2780 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA002 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2780 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2780 nlabel points Performing mapping from target back to the source label 129240 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.label 13107 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.stats sub-BANDA002 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white... Using TH3 vertex volume calc Total face volume 278288 Total vertex volume 274927 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.label" number of vertices = 7620 total surface area = 5045 mm^2 total gray matter volume = 14989 mm^3 average cortical thickness = 2.650 mm +- 0.536 mm average integrated rectified mean curvature = 0.124 average integrated rectified Gaussian curvature = 0.023 folding index = 96 intrinsic curvature index = 7.2 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/mcp_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit --path mcp --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/mcp_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/mcp_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/mcp_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit --path mcp --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/mcp_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/mcp_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/mcp_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit Pathway name: mcp Subject name: sub-BANDA002 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/mcp_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/mcp_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/mcp_avg16_syn_bbr... Done in 0.913 sec. dmri_pathstats done /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit --path lh.af --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit --path lh.af --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit Pathway name: lh.af Subject name: sub-BANDA002 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr... Done in 0.934 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 38988 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt1.surf.mgz Dim: 129240 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt1.surf.mgz Thu Jul 13 12:30:35 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/tmp.0WLkQ5/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/tmp.0WLkQ5/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/tmp.0WLkQ5/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/tmp.0WLkQ5/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/tmp.0WLkQ5/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/tmp.0WLkQ5/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/tmp.0WLkQ5/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/tmp.0WLkQ5/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/tmp.0WLkQ5/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 3340 values in range Counting number of voxels in first frame Found 3339 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 3339 3339.000000 129240 2.583565 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA002 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: -35.35 17.52 28.88 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Found 3340 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA002 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 3340 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3340 nlabel points Performing mapping from target back to the source label 129240 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt1.surf.label 16689 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt1.surf.stats sub-BANDA002 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white... Using TH3 vertex volume calc Total face volume 278288 Total vertex volume 274927 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt1.surf.label" number of vertices = 10004 total surface area = 6611 mm^2 total gray matter volume = 21444 mm^3 average cortical thickness = 2.911 mm +- 0.572 mm average integrated rectified mean curvature = 0.123 average integrated rectified Gaussian curvature = 0.025 folding index = 119 intrinsic curvature index = 10.6 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 38988 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt2.surf.mgz Dim: 129240 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt2.surf.mgz Thu Jul 13 12:30:55 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/tmp.Kp65yb/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/tmp.Kp65yb/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/tmp.Kp65yb/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/tmp.Kp65yb/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/tmp.Kp65yb/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/tmp.Kp65yb/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/tmp.Kp65yb/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/tmp.Kp65yb/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/tmp.Kp65yb/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 3616 values in range Counting number of voxels in first frame Found 3615 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 3615 3615.000000 129240 2.797122 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA002 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: -40.18 -44.41 -6.03 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Found 3616 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA002 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 3616 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3616 nlabel points Performing mapping from target back to the source label 129240 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt2.surf.label 15750 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt2.surf.stats sub-BANDA002 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white... Using TH3 vertex volume calc Total face volume 278288 Total vertex volume 274927 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt2.surf.label" number of vertices = 8891 total surface area = 6118 mm^2 total gray matter volume = 19101 mm^3 average cortical thickness = 2.983 mm +- 0.727 mm average integrated rectified mean curvature = 0.127 average integrated rectified Gaussian curvature = 0.026 folding index = 116 intrinsic curvature index = 9.7 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit --path rh.af --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit --path rh.af --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit Pathway name: rh.af Subject name: sub-BANDA002 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr... Done in 0.929 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 39098 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt1.surf.mgz Dim: 128775 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt1.surf.mgz Thu Jul 13 12:31:16 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/tmp.P4n48j/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/tmp.P4n48j/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/tmp.P4n48j/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/tmp.P4n48j/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/tmp.P4n48j/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/tmp.P4n48j/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/tmp.P4n48j/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/tmp.P4n48j/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/tmp.P4n48j/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 4004 values in range Counting number of voxels in first frame Found 4003 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 4003 4003.000000 128775 3.108523 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA002 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: 28.94 21.90 34.17 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Found 4004 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA002 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 4004 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4004 nlabel points Performing mapping from target back to the source label 128775 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt1.surf.label 15902 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt1.surf.stats sub-BANDA002 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white... Using TH3 vertex volume calc Total face volume 270308 Total vertex volume 266908 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt1.surf.label" number of vertices = 9724 total surface area = 6641 mm^2 total gray matter volume = 19984 mm^3 average cortical thickness = 2.776 mm +- 0.584 mm average integrated rectified mean curvature = 0.128 average integrated rectified Gaussian curvature = 0.028 folding index = 136 intrinsic curvature index = 11.5 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 39098 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt2.surf.mgz Dim: 128775 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt2.surf.mgz Thu Jul 13 12:31:36 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/tmp.FkDipo/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/tmp.FkDipo/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/tmp.FkDipo/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/tmp.FkDipo/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/tmp.FkDipo/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/tmp.FkDipo/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/tmp.FkDipo/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/tmp.FkDipo/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/tmp.FkDipo/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 3322 values in range Counting number of voxels in first frame Found 3321 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 3321 3321.000000 128775 2.578917 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA002 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: 44.09 -42.34 7.67 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Found 3322 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA002 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 3322 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3322 nlabel points Performing mapping from target back to the source label 128775 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt2.surf.label 18223 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt2.surf.stats sub-BANDA002 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white... Using TH3 vertex volume calc Total face volume 270308 Total vertex volume 266908 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt2.surf.label" number of vertices = 9745 total surface area = 6523 mm^2 total gray matter volume = 18384 mm^3 average cortical thickness = 2.811 mm +- 0.645 mm average integrated rectified mean curvature = 0.123 average integrated rectified Gaussian curvature = 0.026 folding index = 116 intrinsic curvature index = 10.2 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit --path lh.ar --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit --path lh.ar --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit Pathway name: lh.ar Subject name: sub-BANDA002 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr... Done in 0.805 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 38988 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.mgz Dim: 129240 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.mgz Thu Jul 13 12:31:56 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/tmp.n2iBGt/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/tmp.n2iBGt/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/tmp.n2iBGt/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/tmp.n2iBGt/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/tmp.n2iBGt/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/tmp.n2iBGt/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/tmp.n2iBGt/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/tmp.n2iBGt/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/tmp.n2iBGt/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 1373 values in range Counting number of voxels in first frame Found 1372 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 1372 1372.000000 129240 1.061591 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA002 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: -46.40 -20.54 4.94 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Found 1373 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA002 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 1373 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1373 nlabel points Performing mapping from target back to the source label 129240 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.label 3594 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.stats sub-BANDA002 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white... Using TH3 vertex volume calc Total face volume 278288 Total vertex volume 274927 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.label" number of vertices = 1958 total surface area = 1237 mm^2 total gray matter volume = 3901 mm^3 average cortical thickness = 2.863 mm +- 0.626 mm average integrated rectified mean curvature = 0.118 average integrated rectified Gaussian curvature = 0.021 folding index = 23 intrinsic curvature index = 1.6 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit --path rh.ar --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit --path rh.ar --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit Pathway name: rh.ar Subject name: sub-BANDA002 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr... Done in 0.809 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 39098 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.mgz Dim: 128775 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.mgz Thu Jul 13 12:32:16 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/tmp.Q0VFSx/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/tmp.Q0VFSx/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/tmp.Q0VFSx/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/tmp.Q0VFSx/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/tmp.Q0VFSx/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/tmp.Q0VFSx/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/tmp.Q0VFSx/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/tmp.Q0VFSx/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/tmp.Q0VFSx/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 1518 values in range Counting number of voxels in first frame Found 1517 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 1517 1517.000000 128775 1.178024 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA002 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: 51.01 -9.58 12.00 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Found 1518 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA002 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 1518 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1518 nlabel points Performing mapping from target back to the source label 128775 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.label 4737 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.stats sub-BANDA002 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white... Using TH3 vertex volume calc Total face volume 270308 Total vertex volume 266908 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.label" number of vertices = 2545 total surface area = 1640 mm^2 total gray matter volume = 6513 mm^3 average cortical thickness = 3.158 mm +- 0.668 mm average integrated rectified mean curvature = 0.119 average integrated rectified Gaussian curvature = 0.026 folding index = 34 intrinsic curvature index = 2.7 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit --path lh.atr --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit --path lh.atr --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit Pathway name: lh.atr Subject name: sub-BANDA002 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr... Done in 0.829 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 38988 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.mgz Dim: 129240 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.mgz Thu Jul 13 12:32:36 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/tmp.fd0bwT/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/tmp.fd0bwT/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/tmp.fd0bwT/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/tmp.fd0bwT/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/tmp.fd0bwT/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/tmp.fd0bwT/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/tmp.fd0bwT/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/tmp.fd0bwT/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/tmp.fd0bwT/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2384 values in range Counting number of voxels in first frame Found 2383 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 2383 2383.000000 129240 1.843856 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA002 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: -21.11 45.31 24.89 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Found 2384 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA002 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2384 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2384 nlabel points Performing mapping from target back to the source label 129240 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.label 10252 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.stats sub-BANDA002 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white... Using TH3 vertex volume calc Total face volume 278288 Total vertex volume 274927 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.label" number of vertices = 6088 total surface area = 4137 mm^2 total gray matter volume = 13749 mm^3 average cortical thickness = 2.880 mm +- 0.630 mm average integrated rectified mean curvature = 0.143 average integrated rectified Gaussian curvature = 0.034 folding index = 97 intrinsic curvature index = 8.6 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit --path rh.atr --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit --path rh.atr --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit Pathway name: rh.atr Subject name: sub-BANDA002 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr... Done in 0.78 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 39098 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.mgz Dim: 128775 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.mgz Thu Jul 13 12:32:57 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/tmp.uc4ebk/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/tmp.uc4ebk/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/tmp.uc4ebk/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/tmp.uc4ebk/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/tmp.uc4ebk/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/tmp.uc4ebk/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/tmp.uc4ebk/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/tmp.uc4ebk/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/tmp.uc4ebk/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2040 values in range Counting number of voxels in first frame Found 2039 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 2039 2039.000000 128775 1.583382 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA002 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: 12.15 42.79 32.37 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Found 2040 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA002 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2040 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2040 nlabel points Performing mapping from target back to the source label 128775 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.label 10556 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.stats sub-BANDA002 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white... Using TH3 vertex volume calc Total face volume 270308 Total vertex volume 266908 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.label" number of vertices = 5488 total surface area = 3689 mm^2 total gray matter volume = 11598 mm^3 average cortical thickness = 2.828 mm +- 0.654 mm average integrated rectified mean curvature = 0.135 average integrated rectified Gaussian curvature = 0.034 folding index = 78 intrinsic curvature index = 7.5 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit --path lh.cbd --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit --path lh.cbd --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit Pathway name: lh.cbd Subject name: sub-BANDA002 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr... Done in 0.792 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 38988 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.mgz Dim: 129240 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.mgz Thu Jul 13 12:33:17 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/tmp.K7CFMC/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/tmp.K7CFMC/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/tmp.K7CFMC/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/tmp.K7CFMC/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/tmp.K7CFMC/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/tmp.K7CFMC/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/tmp.K7CFMC/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/tmp.K7CFMC/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/tmp.K7CFMC/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 1858 values in range Counting number of voxels in first frame Found 1857 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 1857 1857.000000 129240 1.436862 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA002 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: -14.83 21.85 32.78 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Found 1858 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA002 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 1858 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1858 nlabel points Performing mapping from target back to the source label 129240 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.label 11776 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.stats sub-BANDA002 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white... Using TH3 vertex volume calc Total face volume 278288 Total vertex volume 274927 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.label" number of vertices = 5073 total surface area = 3352 mm^2 total gray matter volume = 10228 mm^3 average cortical thickness = 3.015 mm +- 0.631 mm average integrated rectified mean curvature = 0.123 average integrated rectified Gaussian curvature = 0.025 folding index = 57 intrinsic curvature index = 5.5 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 38988 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.mgz Dim: 129240 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.mgz Thu Jul 13 12:33:36 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/tmp.0EAUjQ/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/tmp.0EAUjQ/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/tmp.0EAUjQ/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/tmp.0EAUjQ/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/tmp.0EAUjQ/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/tmp.0EAUjQ/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/tmp.0EAUjQ/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/tmp.0EAUjQ/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/tmp.0EAUjQ/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2213 values in range Counting number of voxels in first frame Found 2212 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 2212 2212.000000 129240 1.711544 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA002 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: -10.64 -56.47 19.74 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Found 2213 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA002 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2213 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2213 nlabel points Performing mapping from target back to the source label 129240 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.label 9867 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.stats sub-BANDA002 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white... Using TH3 vertex volume calc Total face volume 278288 Total vertex volume 274927 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.label" number of vertices = 4775 total surface area = 3225 mm^2 total gray matter volume = 9085 mm^3 average cortical thickness = 2.784 mm +- 0.631 mm average integrated rectified mean curvature = 0.139 average integrated rectified Gaussian curvature = 0.030 folding index = 67 intrinsic curvature index = 6.1 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit --path rh.cbd --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit --path rh.cbd --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit Pathway name: rh.cbd Subject name: sub-BANDA002 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr... Done in 0.784 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 39098 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.mgz Dim: 128775 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.mgz Thu Jul 13 12:33:56 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/tmp.PuEe65/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/tmp.PuEe65/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/tmp.PuEe65/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/tmp.PuEe65/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/tmp.PuEe65/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/tmp.PuEe65/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/tmp.PuEe65/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/tmp.PuEe65/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/tmp.PuEe65/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2119 values in range Counting number of voxels in first frame Found 2118 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 2118 2118.000000 128775 1.644729 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA002 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: 6.04 17.19 40.13 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Found 2119 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA002 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2119 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2119 nlabel points Performing mapping from target back to the source label 128775 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.label 10249 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.stats sub-BANDA002 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white... Using TH3 vertex volume calc Total face volume 270308 Total vertex volume 266908 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.label" number of vertices = 5409 total surface area = 3636 mm^2 total gray matter volume = 12327 mm^3 average cortical thickness = 3.023 mm +- 0.677 mm average integrated rectified mean curvature = 0.127 average integrated rectified Gaussian curvature = 0.027 folding index = 72 intrinsic curvature index = 5.8 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 39098 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.mgz Dim: 128775 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.mgz Thu Jul 13 12:34:16 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/tmp.NyDCCI/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/tmp.NyDCCI/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/tmp.NyDCCI/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/tmp.NyDCCI/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/tmp.NyDCCI/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/tmp.NyDCCI/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/tmp.NyDCCI/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/tmp.NyDCCI/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/tmp.NyDCCI/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2135 values in range Counting number of voxels in first frame Found 2134 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 2134 2134.000000 128775 1.657154 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA002 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: 11.07 -53.45 22.61 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Found 2135 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA002 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2135 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2135 nlabel points Performing mapping from target back to the source label 128775 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.label 8181 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.stats sub-BANDA002 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white... Using TH3 vertex volume calc Total face volume 270308 Total vertex volume 266908 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.label" number of vertices = 4168 total surface area = 2749 mm^2 total gray matter volume = 7896 mm^3 average cortical thickness = 2.661 mm +- 0.697 mm average integrated rectified mean curvature = 0.129 average integrated rectified Gaussian curvature = 0.030 folding index = 53 intrinsic curvature index = 5.2 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit --path lh.cbv --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit --path lh.cbv --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit Pathway name: lh.cbv Subject name: sub-BANDA002 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr... Done in 0.758 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 38988 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.mgz Dim: 129240 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.mgz Thu Jul 13 12:34:36 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/tmp.C1NKe8/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/tmp.C1NKe8/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/tmp.C1NKe8/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/tmp.C1NKe8/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/tmp.C1NKe8/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/tmp.C1NKe8/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/tmp.C1NKe8/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/tmp.C1NKe8/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/tmp.C1NKe8/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 725 values in range Counting number of voxels in first frame Found 724 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 724 724.000000 129240 0.560198 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA002 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: -14.05 -61.94 21.05 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Found 725 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA002 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 725 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 725 nlabel points Performing mapping from target back to the source label 129240 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.label 4863 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.stats sub-BANDA002 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white... Using TH3 vertex volume calc Total face volume 278288 Total vertex volume 274927 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.label" number of vertices = 1831 total surface area = 1209 mm^2 total gray matter volume = 3074 mm^3 average cortical thickness = 2.653 mm +- 0.458 mm average integrated rectified mean curvature = 0.133 average integrated rectified Gaussian curvature = 0.028 folding index = 20 intrinsic curvature index = 2.2 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 38988 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.mgz Dim: 129240 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.mgz Thu Jul 13 12:34:55 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/tmp.KuBdXX/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/tmp.KuBdXX/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/tmp.KuBdXX/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/tmp.KuBdXX/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/tmp.KuBdXX/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/tmp.KuBdXX/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/tmp.KuBdXX/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/tmp.KuBdXX/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/tmp.KuBdXX/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 1202 values in range Counting number of voxels in first frame Found 1201 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 1201 1201.000000 129240 0.929279 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA002 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: -20.11 -33.59 -7.33 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Found 1202 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA002 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 1202 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1202 nlabel points Performing mapping from target back to the source label 129240 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.label 3534 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.stats sub-BANDA002 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white... Using TH3 vertex volume calc Total face volume 278288 Total vertex volume 274927 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.label" number of vertices = 1716 total surface area = 1129 mm^2 total gray matter volume = 2792 mm^3 average cortical thickness = 3.007 mm +- 1.008 mm average integrated rectified mean curvature = 0.117 average integrated rectified Gaussian curvature = 0.029 folding index = 18 intrinsic curvature index = 2.0 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit --path rh.cbv --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit --path rh.cbv --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit Pathway name: rh.cbv Subject name: sub-BANDA002 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr... Done in 0.761 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 39098 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.mgz Dim: 128775 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.mgz Thu Jul 13 12:35:15 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/tmp.JXvsyk/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/tmp.JXvsyk/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/tmp.JXvsyk/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/tmp.JXvsyk/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/tmp.JXvsyk/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/tmp.JXvsyk/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/tmp.JXvsyk/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/tmp.JXvsyk/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/tmp.JXvsyk/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2599 values in range Counting number of voxels in first frame Found 2598 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 2598 2598.000000 128775 2.017472 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA002 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: 13.96 -67.82 27.65 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Found 2599 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA002 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2599 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2599 nlabel points Performing mapping from target back to the source label 128775 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.label 8703 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.stats sub-BANDA002 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white... Using TH3 vertex volume calc Total face volume 270308 Total vertex volume 266908 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.label" number of vertices = 4988 total surface area = 3302 mm^2 total gray matter volume = 8849 mm^3 average cortical thickness = 2.452 mm +- 0.555 mm average integrated rectified mean curvature = 0.121 average integrated rectified Gaussian curvature = 0.024 folding index = 66 intrinsic curvature index = 4.8 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 39098 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.mgz Dim: 128775 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.mgz Thu Jul 13 12:35:34 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/tmp.VBWrxK/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/tmp.VBWrxK/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/tmp.VBWrxK/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/tmp.VBWrxK/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/tmp.VBWrxK/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/tmp.VBWrxK/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/tmp.VBWrxK/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/tmp.VBWrxK/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/tmp.VBWrxK/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 1975 values in range Counting number of voxels in first frame Found 1974 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 1974 1974.000000 128775 1.532906 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA002 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: 28.06 -23.83 -6.57 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Found 1975 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA002 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 1975 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1975 nlabel points Performing mapping from target back to the source label 128775 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.label 5412 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.stats sub-BANDA002 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white... Using TH3 vertex volume calc Total face volume 270308 Total vertex volume 266908 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.label" number of vertices = 3395 total surface area = 2337 mm^2 total gray matter volume = 6172 mm^3 average cortical thickness = 3.106 mm +- 1.021 mm average integrated rectified mean curvature = 0.117 average integrated rectified Gaussian curvature = 0.025 folding index = 36 intrinsic curvature index = 3.4 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit --path lh.cst --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit --path lh.cst --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit Pathway name: lh.cst Subject name: sub-BANDA002 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr... Done in 0.789 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 38988 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.mgz Dim: 129240 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.mgz Thu Jul 13 12:35:54 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/tmp.FYzJwY/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/tmp.FYzJwY/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/tmp.FYzJwY/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/tmp.FYzJwY/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/tmp.FYzJwY/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/tmp.FYzJwY/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/tmp.FYzJwY/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/tmp.FYzJwY/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/tmp.FYzJwY/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 3177 values in range Counting number of voxels in first frame Found 3176 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 3176 3176.000000 129240 2.457444 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA002 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: -18.61 -24.90 51.93 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Found 3177 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA002 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 3177 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3177 nlabel points Performing mapping from target back to the source label 129240 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.label 13332 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.stats sub-BANDA002 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white... Using TH3 vertex volume calc Total face volume 278288 Total vertex volume 274927 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.label" number of vertices = 8606 total surface area = 5575 mm^2 total gray matter volume = 18568 mm^3 average cortical thickness = 2.922 mm +- 0.678 mm average integrated rectified mean curvature = 0.109 average integrated rectified Gaussian curvature = 0.020 folding index = 80 intrinsic curvature index = 6.6 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit --path rh.cst --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit --path rh.cst --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit Pathway name: rh.cst Subject name: sub-BANDA002 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr... Done in 0.919 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 39098 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.mgz Dim: 128775 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.mgz Thu Jul 13 12:36:15 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/tmp.YvBZa0/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/tmp.YvBZa0/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/tmp.YvBZa0/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/tmp.YvBZa0/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/tmp.YvBZa0/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/tmp.YvBZa0/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/tmp.YvBZa0/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/tmp.YvBZa0/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/tmp.YvBZa0/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 3221 values in range Counting number of voxels in first frame Found 3220 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 3220 3220.000000 128775 2.500485 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA002 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: 13.52 -26.88 54.42 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Found 3221 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA002 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 3221 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3221 nlabel points Performing mapping from target back to the source label 128775 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.label 11311 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.stats sub-BANDA002 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white... Using TH3 vertex volume calc Total face volume 270308 Total vertex volume 266908 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.label" number of vertices = 7549 total surface area = 4982 mm^2 total gray matter volume = 16835 mm^3 average cortical thickness = 2.867 mm +- 0.690 mm average integrated rectified mean curvature = 0.111 average integrated rectified Gaussian curvature = 0.020 folding index = 73 intrinsic curvature index = 6.2 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit --path lh.emc --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit --path lh.emc --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit Pathway name: lh.emc Subject name: sub-BANDA002 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr... Done in 0.804 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 38988 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.mgz Dim: 129240 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.mgz Thu Jul 13 12:36:35 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/tmp.qjsGkO/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/tmp.qjsGkO/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/tmp.qjsGkO/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/tmp.qjsGkO/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/tmp.qjsGkO/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/tmp.qjsGkO/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/tmp.qjsGkO/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/tmp.qjsGkO/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/tmp.qjsGkO/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2502 values in range Counting number of voxels in first frame Found 2501 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 2501 2501.000000 129240 1.935159 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA002 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: -34.34 32.52 13.13 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Found 2502 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA002 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2502 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2502 nlabel points Performing mapping from target back to the source label 129240 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.label 8151 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.stats sub-BANDA002 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white... Using TH3 vertex volume calc Total face volume 278288 Total vertex volume 274927 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.label" number of vertices = 5733 total surface area = 3861 mm^2 total gray matter volume = 14185 mm^3 average cortical thickness = 3.086 mm +- 0.653 mm average integrated rectified mean curvature = 0.131 average integrated rectified Gaussian curvature = 0.030 folding index = 87 intrinsic curvature index = 6.7 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 38988 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.mgz Dim: 129240 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.mgz Thu Jul 13 12:36:55 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/tmp.g7jECd/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/tmp.g7jECd/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/tmp.g7jECd/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/tmp.g7jECd/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/tmp.g7jECd/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/tmp.g7jECd/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/tmp.g7jECd/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/tmp.g7jECd/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/tmp.g7jECd/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2954 values in range Counting number of voxels in first frame Found 2953 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 2953 2953.000000 129240 2.284896 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA002 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: -44.05 -17.03 -13.92 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Found 2954 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA002 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2954 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2954 nlabel points Performing mapping from target back to the source label 129240 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.label 8705 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.stats sub-BANDA002 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white... Using TH3 vertex volume calc Total face volume 278288 Total vertex volume 274927 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.label" number of vertices = 5442 total surface area = 3635 mm^2 total gray matter volume = 13005 mm^3 average cortical thickness = 3.051 mm +- 0.726 mm average integrated rectified mean curvature = 0.126 average integrated rectified Gaussian curvature = 0.027 folding index = 80 intrinsic curvature index = 6.1 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit --path rh.emc --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit --path rh.emc --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit Pathway name: rh.emc Subject name: sub-BANDA002 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr... Done in 0.795 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 39098 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.mgz Dim: 128775 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.mgz Thu Jul 13 12:37:15 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/tmp.LmaqAI/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/tmp.LmaqAI/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/tmp.LmaqAI/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/tmp.LmaqAI/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/tmp.LmaqAI/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/tmp.LmaqAI/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/tmp.LmaqAI/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/tmp.LmaqAI/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/tmp.LmaqAI/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2716 values in range Counting number of voxels in first frame Found 2715 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 2715 2715.000000 128775 2.108328 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA002 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: 30.49 36.63 17.55 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Found 2716 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA002 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2716 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2716 nlabel points Performing mapping from target back to the source label 128775 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.label 7506 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.stats sub-BANDA002 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white... Using TH3 vertex volume calc Total face volume 270308 Total vertex volume 266908 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.label" number of vertices = 5044 total surface area = 3409 mm^2 total gray matter volume = 12772 mm^3 average cortical thickness = 2.968 mm +- 0.713 mm average integrated rectified mean curvature = 0.135 average integrated rectified Gaussian curvature = 0.035 folding index = 86 intrinsic curvature index = 7.4 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 39098 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.mgz Dim: 128775 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.mgz Thu Jul 13 12:37:34 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/tmp.eTf3M9/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/tmp.eTf3M9/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/tmp.eTf3M9/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/tmp.eTf3M9/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/tmp.eTf3M9/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/tmp.eTf3M9/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/tmp.eTf3M9/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/tmp.eTf3M9/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/tmp.eTf3M9/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2968 values in range Counting number of voxels in first frame Found 2967 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 2967 2967.000000 128775 2.304019 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA002 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: 50.66 -19.85 -4.79 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Found 2968 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA002 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2968 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2968 nlabel points Performing mapping from target back to the source label 128775 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.label 10865 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.stats sub-BANDA002 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white... Using TH3 vertex volume calc Total face volume 270308 Total vertex volume 266908 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.label" number of vertices = 6744 total surface area = 4527 mm^2 total gray matter volume = 15478 mm^3 average cortical thickness = 2.946 mm +- 0.676 mm average integrated rectified mean curvature = 0.119 average integrated rectified Gaussian curvature = 0.025 folding index = 91 intrinsic curvature index = 7.0 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit --path lh.fat --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit --path lh.fat --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit Pathway name: lh.fat Subject name: sub-BANDA002 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr... Done in 0.768 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 38988 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.mgz Dim: 129240 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.mgz Thu Jul 13 12:37:55 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/tmp.r2KRFr/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/tmp.r2KRFr/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/tmp.r2KRFr/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/tmp.r2KRFr/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/tmp.r2KRFr/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/tmp.r2KRFr/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/tmp.r2KRFr/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/tmp.r2KRFr/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/tmp.r2KRFr/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2147 values in range Counting number of voxels in first frame Found 2146 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 2146 2146.000000 129240 1.660477 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA002 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: -16.58 3.05 49.94 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Found 2147 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA002 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2147 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2147 nlabel points Performing mapping from target back to the source label 129240 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.label 9649 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.stats sub-BANDA002 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white... Using TH3 vertex volume calc Total face volume 278288 Total vertex volume 274927 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.label" number of vertices = 6130 total surface area = 4128 mm^2 total gray matter volume = 15576 mm^3 average cortical thickness = 3.303 mm +- 0.582 mm average integrated rectified mean curvature = 0.122 average integrated rectified Gaussian curvature = 0.026 folding index = 73 intrinsic curvature index = 6.1 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 38988 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.mgz Dim: 129240 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.mgz Thu Jul 13 12:38:14 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/tmp.OPME6Q/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/tmp.OPME6Q/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/tmp.OPME6Q/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/tmp.OPME6Q/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/tmp.OPME6Q/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/tmp.OPME6Q/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/tmp.OPME6Q/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/tmp.OPME6Q/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/tmp.OPME6Q/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 1736 values in range Counting number of voxels in first frame Found 1735 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 1735 1735.000000 129240 1.342464 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA002 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: -41.07 2.85 20.44 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Found 1736 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA002 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 1736 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1736 nlabel points Performing mapping from target back to the source label 129240 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.label 6474 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.stats sub-BANDA002 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white... Using TH3 vertex volume calc Total face volume 278288 Total vertex volume 274927 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.label" number of vertices = 4092 total surface area = 2725 mm^2 total gray matter volume = 9860 mm^3 average cortical thickness = 3.104 mm +- 0.532 mm average integrated rectified mean curvature = 0.127 average integrated rectified Gaussian curvature = 0.025 folding index = 53 intrinsic curvature index = 4.3 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit --path rh.fat --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit --path rh.fat --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit Pathway name: rh.fat Subject name: sub-BANDA002 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr... Done in 0.754 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 39098 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.mgz Dim: 128775 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.mgz Thu Jul 13 12:38:34 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/tmp.oD612e/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/tmp.oD612e/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/tmp.oD612e/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/tmp.oD612e/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/tmp.oD612e/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/tmp.oD612e/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/tmp.oD612e/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/tmp.oD612e/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/tmp.oD612e/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2352 values in range Counting number of voxels in first frame Found 2351 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 2351 2351.000000 128775 1.825665 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA002 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: 7.69 1.76 53.77 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Found 2352 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA002 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2352 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2352 nlabel points Performing mapping from target back to the source label 128775 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.label 7951 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.stats sub-BANDA002 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white... Using TH3 vertex volume calc Total face volume 270308 Total vertex volume 266908 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.label" number of vertices = 5653 total surface area = 3817 mm^2 total gray matter volume = 14430 mm^3 average cortical thickness = 3.165 mm +- 0.622 mm average integrated rectified mean curvature = 0.123 average integrated rectified Gaussian curvature = 0.024 folding index = 65 intrinsic curvature index = 5.6 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 39098 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.mgz Dim: 128775 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.mgz Thu Jul 13 12:38:54 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/tmp.4L25IL/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/tmp.4L25IL/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/tmp.4L25IL/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/tmp.4L25IL/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/tmp.4L25IL/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/tmp.4L25IL/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/tmp.4L25IL/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/tmp.4L25IL/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/tmp.4L25IL/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2574 values in range Counting number of voxels in first frame Found 2573 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 2573 2573.000000 128775 1.998059 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA002 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: 37.02 7.35 30.61 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Found 2574 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA002 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2574 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2574 nlabel points Performing mapping from target back to the source label 128775 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.label 8483 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.stats sub-BANDA002 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white... Using TH3 vertex volume calc Total face volume 270308 Total vertex volume 266908 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.label" number of vertices = 5027 total surface area = 3365 mm^2 total gray matter volume = 10529 mm^3 average cortical thickness = 2.888 mm +- 0.534 mm average integrated rectified mean curvature = 0.119 average integrated rectified Gaussian curvature = 0.023 folding index = 62 intrinsic curvature index = 4.8 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit --path lh.fx --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit --path lh.fx --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit Pathway name: lh.fx Subject name: sub-BANDA002 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr... Done in 0.793 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 38988 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.mgz Dim: 129240 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.mgz Thu Jul 13 12:39:14 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/tmp.2ETDOr/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/tmp.2ETDOr/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/tmp.2ETDOr/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/tmp.2ETDOr/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/tmp.2ETDOr/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/tmp.2ETDOr/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/tmp.2ETDOr/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/tmp.2ETDOr/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/tmp.2ETDOr/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2254 values in range Counting number of voxels in first frame Found 2253 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 2253 2253.000000 129240 1.743268 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA002 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: -34.41 4.19 -17.28 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Found 2254 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA002 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2254 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2254 nlabel points Performing mapping from target back to the source label 129240 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.label 5484 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.stats sub-BANDA002 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white... Using TH3 vertex volume calc Total face volume 278288 Total vertex volume 274927 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.label" number of vertices = 3787 total surface area = 2627 mm^2 total gray matter volume = 11818 mm^3 average cortical thickness = 3.468 mm +- 0.792 mm average integrated rectified mean curvature = 0.141 average integrated rectified Gaussian curvature = 0.039 folding index = 62 intrinsic curvature index = 6.1 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit --path rh.fx --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit --path rh.fx --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit Pathway name: rh.fx Subject name: sub-BANDA002 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr... Done in 0.817 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 39098 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.mgz Dim: 128775 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.mgz Thu Jul 13 12:39:34 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/tmp.XeEc2H/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/tmp.XeEc2H/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/tmp.XeEc2H/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/tmp.XeEc2H/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/tmp.XeEc2H/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/tmp.XeEc2H/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/tmp.XeEc2H/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/tmp.XeEc2H/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/tmp.XeEc2H/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2783 values in range Counting number of voxels in first frame Found 2782 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 2782 2782.000000 128775 2.160357 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA002 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: 34.66 7.45 -11.80 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Found 2783 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA002 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2783 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2783 nlabel points Performing mapping from target back to the source label 128775 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.label 6386 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.stats sub-BANDA002 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white... Using TH3 vertex volume calc Total face volume 270308 Total vertex volume 266908 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.label" number of vertices = 4359 total surface area = 3017 mm^2 total gray matter volume = 11364 mm^3 average cortical thickness = 3.298 mm +- 0.939 mm average integrated rectified mean curvature = 0.133 average integrated rectified Gaussian curvature = 0.035 folding index = 71 intrinsic curvature index = 6.0 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit --path lh.ilf --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit --path lh.ilf --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit Pathway name: lh.ilf Subject name: sub-BANDA002 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr... Done in 0.784 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 38988 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.mgz Dim: 129240 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.mgz Thu Jul 13 12:39:54 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/tmp.Sp4GKo/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/tmp.Sp4GKo/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/tmp.Sp4GKo/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/tmp.Sp4GKo/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/tmp.Sp4GKo/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/tmp.Sp4GKo/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/tmp.Sp4GKo/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/tmp.Sp4GKo/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/tmp.Sp4GKo/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2856 values in range Counting number of voxels in first frame Found 2855 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 2855 2855.000000 129240 2.209068 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA002 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: -38.40 1.56 -14.13 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Found 2856 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA002 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2856 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2856 nlabel points Performing mapping from target back to the source label 129240 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.label 6910 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.stats sub-BANDA002 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white... Using TH3 vertex volume calc Total face volume 278288 Total vertex volume 274927 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.label" number of vertices = 4968 total surface area = 3417 mm^2 total gray matter volume = 14879 mm^3 average cortical thickness = 3.423 mm +- 0.832 mm average integrated rectified mean curvature = 0.134 average integrated rectified Gaussian curvature = 0.034 folding index = 77 intrinsic curvature index = 7.2 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 38988 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.mgz Dim: 129240 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.mgz Thu Jul 13 12:40:14 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/tmp.AhAre2/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/tmp.AhAre2/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/tmp.AhAre2/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/tmp.AhAre2/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/tmp.AhAre2/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/tmp.AhAre2/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/tmp.AhAre2/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/tmp.AhAre2/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/tmp.AhAre2/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 3009 values in range Counting number of voxels in first frame Found 3008 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 3008 3008.000000 129240 2.327453 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA002 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: -15.16 -75.10 -5.35 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Found 3009 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA002 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 3009 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3009 nlabel points Performing mapping from target back to the source label 129240 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.label 18533 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.stats sub-BANDA002 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white... Using TH3 vertex volume calc Total face volume 278288 Total vertex volume 274927 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.label" number of vertices = 10140 total surface area = 6554 mm^2 total gray matter volume = 15601 mm^3 average cortical thickness = 2.418 mm +- 0.596 mm average integrated rectified mean curvature = 0.134 average integrated rectified Gaussian curvature = 0.029 folding index = 123 intrinsic curvature index = 12.1 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit --path rh.ilf --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit --path rh.ilf --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit Pathway name: rh.ilf Subject name: sub-BANDA002 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr... Done in 0.782 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 39098 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.mgz Dim: 128775 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.mgz Thu Jul 13 12:40:34 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/tmp.mPNGIy/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/tmp.mPNGIy/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/tmp.mPNGIy/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/tmp.mPNGIy/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/tmp.mPNGIy/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/tmp.mPNGIy/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/tmp.mPNGIy/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/tmp.mPNGIy/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/tmp.mPNGIy/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 3223 values in range Counting number of voxels in first frame Found 3222 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 3222 3222.000000 128775 2.502038 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA002 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: 38.48 6.20 -8.55 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Found 3223 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA002 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 3223 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3223 nlabel points Performing mapping from target back to the source label 128775 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.label 8537 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.stats sub-BANDA002 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white... Using TH3 vertex volume calc Total face volume 270308 Total vertex volume 266908 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.label" number of vertices = 6651 total surface area = 4547 mm^2 total gray matter volume = 18165 mm^3 average cortical thickness = 3.315 mm +- 0.906 mm average integrated rectified mean curvature = 0.128 average integrated rectified Gaussian curvature = 0.032 folding index = 106 intrinsic curvature index = 8.4 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 39098 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.mgz Dim: 128775 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.mgz Thu Jul 13 12:40:54 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/tmp.TGF6zl/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/tmp.TGF6zl/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/tmp.TGF6zl/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/tmp.TGF6zl/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/tmp.TGF6zl/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/tmp.TGF6zl/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/tmp.TGF6zl/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/tmp.TGF6zl/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/tmp.TGF6zl/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 3567 values in range Counting number of voxels in first frame Found 3566 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 3566 3566.000000 128775 2.769171 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA002 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: 23.41 -74.05 1.04 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Found 3567 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA002 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 3567 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3567 nlabel points Performing mapping from target back to the source label 128775 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.label 23204 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.stats sub-BANDA002 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white... Using TH3 vertex volume calc Total face volume 270308 Total vertex volume 266908 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.label" number of vertices = 13277 total surface area = 8587 mm^2 total gray matter volume = 19845 mm^3 average cortical thickness = 2.326 mm +- 0.567 mm average integrated rectified mean curvature = 0.126 average integrated rectified Gaussian curvature = 0.027 folding index = 151 intrinsic curvature index = 14.7 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit --path lh.mlf --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit --path lh.mlf --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit Pathway name: lh.mlf Subject name: sub-BANDA002 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr... Done in 0.78 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 38988 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.mgz Dim: 129240 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.mgz Thu Jul 13 12:41:15 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/tmp.FR0yG8/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/tmp.FR0yG8/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/tmp.FR0yG8/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/tmp.FR0yG8/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/tmp.FR0yG8/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/tmp.FR0yG8/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/tmp.FR0yG8/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/tmp.FR0yG8/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/tmp.FR0yG8/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2051 values in range Counting number of voxels in first frame Found 2050 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 2050 2050.000000 129240 1.586196 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA002 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: -43.90 -0.28 -4.55 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Found 2051 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA002 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2051 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2051 nlabel points Performing mapping from target back to the source label 129240 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.label 5779 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.stats sub-BANDA002 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white... Using TH3 vertex volume calc Total face volume 278288 Total vertex volume 274927 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.label" number of vertices = 3313 total surface area = 2194 mm^2 total gray matter volume = 9627 mm^3 average cortical thickness = 3.420 mm +- 0.764 mm average integrated rectified mean curvature = 0.121 average integrated rectified Gaussian curvature = 0.027 folding index = 49 intrinsic curvature index = 3.6 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 38988 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.mgz Dim: 129240 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.mgz Thu Jul 13 12:41:34 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/tmp.UYyWqD/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/tmp.UYyWqD/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/tmp.UYyWqD/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/tmp.UYyWqD/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/tmp.UYyWqD/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/tmp.UYyWqD/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/tmp.UYyWqD/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/tmp.UYyWqD/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/tmp.UYyWqD/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2598 values in range Counting number of voxels in first frame Found 2597 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 2597 2597.000000 129240 2.009440 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA002 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: -20.13 -76.71 13.46 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Found 2598 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA002 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2598 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2598 nlabel points Performing mapping from target back to the source label 129240 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.label 17798 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.stats sub-BANDA002 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white... Using TH3 vertex volume calc Total face volume 278288 Total vertex volume 274927 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.label" number of vertices = 10021 total surface area = 6579 mm^2 total gray matter volume = 19406 mm^3 average cortical thickness = 2.616 mm +- 0.557 mm average integrated rectified mean curvature = 0.126 average integrated rectified Gaussian curvature = 0.025 folding index = 134 intrinsic curvature index = 9.8 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit --path rh.mlf --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit --path rh.mlf --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit Pathway name: rh.mlf Subject name: sub-BANDA002 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr... Done in 0.779 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 39098 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.mgz Dim: 128775 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.mgz Thu Jul 13 12:41:54 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/tmp.T8GAXi/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/tmp.T8GAXi/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/tmp.T8GAXi/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/tmp.T8GAXi/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/tmp.T8GAXi/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/tmp.T8GAXi/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/tmp.T8GAXi/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/tmp.T8GAXi/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/tmp.T8GAXi/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 1748 values in range Counting number of voxels in first frame Found 1747 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 1747 1747.000000 128775 1.356630 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA002 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: 47.59 -0.96 5.84 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Found 1748 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA002 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 1748 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1748 nlabel points Performing mapping from target back to the source label 128775 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.label 5219 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.stats sub-BANDA002 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white... Using TH3 vertex volume calc Total face volume 270308 Total vertex volume 266908 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.label" number of vertices = 2889 total surface area = 1886 mm^2 total gray matter volume = 7050 mm^3 average cortical thickness = 3.116 mm +- 0.695 mm average integrated rectified mean curvature = 0.116 average integrated rectified Gaussian curvature = 0.025 folding index = 39 intrinsic curvature index = 3.2 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 39098 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.mgz Dim: 128775 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.mgz Thu Jul 13 12:42:14 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/tmp.tvVRDv/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/tmp.tvVRDv/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/tmp.tvVRDv/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/tmp.tvVRDv/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/tmp.tvVRDv/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/tmp.tvVRDv/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/tmp.tvVRDv/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/tmp.tvVRDv/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/tmp.tvVRDv/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2431 values in range Counting number of voxels in first frame Found 2430 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 2430 2430.000000 128775 1.887012 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA002 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: 24.84 -71.06 21.63 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Found 2431 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA002 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2431 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2431 nlabel points Performing mapping from target back to the source label 128775 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.label 18747 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.stats sub-BANDA002 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white... Using TH3 vertex volume calc Total face volume 270308 Total vertex volume 266908 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.label" number of vertices = 8744 total surface area = 5722 mm^2 total gray matter volume = 13743 mm^3 average cortical thickness = 2.403 mm +- 0.548 mm average integrated rectified mean curvature = 0.120 average integrated rectified Gaussian curvature = 0.023 folding index = 93 intrinsic curvature index = 8.1 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.or_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit --path lh.or --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.or_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit --path lh.or --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.or_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit Pathway name: lh.or Subject name: sub-BANDA002 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.or_avg16_syn_bbr... Done in 0.756 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 38988 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/endpt2.surf.mgz Dim: 129240 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/endpt2.surf.mgz Thu Jul 13 12:42:34 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/tmp.tkGMZ0/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/tmp.tkGMZ0/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/tmp.tkGMZ0/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/tmp.tkGMZ0/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/tmp.tkGMZ0/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/tmp.tkGMZ0/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/tmp.tkGMZ0/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/tmp.tkGMZ0/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/tmp.tkGMZ0/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 3032 values in range Counting number of voxels in first frame Found 3031 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 3031 3031.000000 129240 2.345249 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA002 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: -17.75 -77.40 -3.54 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Found 3032 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA002 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 3032 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3032 nlabel points Performing mapping from target back to the source label 129240 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/endpt2.surf.label 15037 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/endpt2.surf.stats sub-BANDA002 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white... Using TH3 vertex volume calc Total face volume 278288 Total vertex volume 274927 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/endpt2.surf.label" number of vertices = 8327 total surface area = 5345 mm^2 total gray matter volume = 13321 mm^3 average cortical thickness = 2.455 mm +- 0.615 mm average integrated rectified mean curvature = 0.131 average integrated rectified Gaussian curvature = 0.028 folding index = 99 intrinsic curvature index = 9.6 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.or_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit --path rh.or --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.or_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit --path rh.or --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.or_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit Pathway name: rh.or Subject name: sub-BANDA002 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.or_avg16_syn_bbr... Done in 0.761 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 39098 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/endpt2.surf.mgz Dim: 128775 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/endpt2.surf.mgz Thu Jul 13 12:42:55 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/tmp.bXVRa5/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/tmp.bXVRa5/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/tmp.bXVRa5/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/tmp.bXVRa5/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/tmp.bXVRa5/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/tmp.bXVRa5/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/tmp.bXVRa5/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/tmp.bXVRa5/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/tmp.bXVRa5/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2672 values in range Counting number of voxels in first frame Found 2671 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 2671 2671.000000 128775 2.074160 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA002 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: 22.78 -80.21 3.46 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Found 2672 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA002 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2672 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2672 nlabel points Performing mapping from target back to the source label 128775 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/endpt2.surf.label 16323 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/endpt2.surf.stats sub-BANDA002 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white... Using TH3 vertex volume calc Total face volume 270308 Total vertex volume 266908 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/endpt2.surf.label" number of vertices = 8691 total surface area = 5530 mm^2 total gray matter volume = 12621 mm^3 average cortical thickness = 2.291 mm +- 0.498 mm average integrated rectified mean curvature = 0.127 average integrated rectified Gaussian curvature = 0.026 folding index = 101 intrinsic curvature index = 9.6 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit --path lh.slf1 --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit --path lh.slf1 --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit Pathway name: lh.slf1 Subject name: sub-BANDA002 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr... Done in 0.778 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 38988 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.mgz Dim: 129240 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.mgz Thu Jul 13 12:43:15 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/tmp.VoUDrY/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/tmp.VoUDrY/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/tmp.VoUDrY/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/tmp.VoUDrY/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/tmp.VoUDrY/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/tmp.VoUDrY/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/tmp.VoUDrY/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/tmp.VoUDrY/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/tmp.VoUDrY/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2915 values in range Counting number of voxels in first frame Found 2914 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 2914 2914.000000 129240 2.254720 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA002 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: -16.80 20.23 45.75 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Found 2915 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA002 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2915 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2915 nlabel points Performing mapping from target back to the source label 129240 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.label 11984 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.stats sub-BANDA002 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white... Using TH3 vertex volume calc Total face volume 278288 Total vertex volume 274927 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.label" number of vertices = 7648 total surface area = 5103 mm^2 total gray matter volume = 19235 mm^3 average cortical thickness = 3.221 mm +- 0.660 mm average integrated rectified mean curvature = 0.127 average integrated rectified Gaussian curvature = 0.029 folding index = 99 intrinsic curvature index = 9.4 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 38988 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.mgz Dim: 129240 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.mgz Thu Jul 13 12:43:35 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/tmp.OxBt1r/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/tmp.OxBt1r/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/tmp.OxBt1r/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/tmp.OxBt1r/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/tmp.OxBt1r/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/tmp.OxBt1r/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/tmp.OxBt1r/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/tmp.OxBt1r/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/tmp.OxBt1r/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 3215 values in range Counting number of voxels in first frame Found 3214 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 3214 3214.000000 129240 2.486846 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA002 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: -11.96 -64.39 37.78 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Found 3215 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA002 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 3215 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3215 nlabel points Performing mapping from target back to the source label 129240 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.label 9444 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.stats sub-BANDA002 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white... Using TH3 vertex volume calc Total face volume 278288 Total vertex volume 274927 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.label" number of vertices = 6246 total surface area = 4163 mm^2 total gray matter volume = 13420 mm^3 average cortical thickness = 2.718 mm +- 0.588 mm average integrated rectified mean curvature = 0.126 average integrated rectified Gaussian curvature = 0.026 folding index = 89 intrinsic curvature index = 6.6 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit --path rh.slf1 --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit --path rh.slf1 --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit Pathway name: rh.slf1 Subject name: sub-BANDA002 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr... Done in 0.776 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 39098 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.mgz Dim: 128775 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.mgz Thu Jul 13 12:43:55 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/tmp.ucQjJ2/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/tmp.ucQjJ2/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/tmp.ucQjJ2/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/tmp.ucQjJ2/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/tmp.ucQjJ2/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/tmp.ucQjJ2/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/tmp.ucQjJ2/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/tmp.ucQjJ2/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/tmp.ucQjJ2/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2736 values in range Counting number of voxels in first frame Found 2735 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 2735 2735.000000 128775 2.123859 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA002 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: 7.60 29.89 41.62 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Found 2736 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA002 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2736 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2736 nlabel points Performing mapping from target back to the source label 128775 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.label 12653 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.stats sub-BANDA002 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white... Using TH3 vertex volume calc Total face volume 270308 Total vertex volume 266908 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.label" number of vertices = 7260 total surface area = 4900 mm^2 total gray matter volume = 16243 mm^3 average cortical thickness = 2.967 mm +- 0.625 mm average integrated rectified mean curvature = 0.127 average integrated rectified Gaussian curvature = 0.029 folding index = 90 intrinsic curvature index = 8.9 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 39098 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.mgz Dim: 128775 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.mgz Thu Jul 13 12:44:14 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/tmp.DLad0z/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/tmp.DLad0z/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/tmp.DLad0z/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/tmp.DLad0z/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/tmp.DLad0z/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/tmp.DLad0z/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/tmp.DLad0z/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/tmp.DLad0z/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/tmp.DLad0z/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 3656 values in range Counting number of voxels in first frame Found 3655 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 3655 3655.000000 128775 2.838284 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA002 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: 9.79 -61.25 41.79 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Found 3656 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA002 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 3656 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3656 nlabel points Performing mapping from target back to the source label 128775 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.label 9932 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.stats sub-BANDA002 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white... Using TH3 vertex volume calc Total face volume 270308 Total vertex volume 266908 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.label" number of vertices = 6475 total surface area = 4307 mm^2 total gray matter volume = 12638 mm^3 average cortical thickness = 2.494 mm +- 0.605 mm average integrated rectified mean curvature = 0.126 average integrated rectified Gaussian curvature = 0.026 folding index = 95 intrinsic curvature index = 6.9 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit --path lh.slf2 --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit --path lh.slf2 --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit Pathway name: lh.slf2 Subject name: sub-BANDA002 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr... Done in 0.784 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 38988 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.mgz Dim: 129240 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.mgz Thu Jul 13 12:44:35 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/tmp.H1SiSt/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/tmp.H1SiSt/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/tmp.H1SiSt/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/tmp.H1SiSt/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/tmp.H1SiSt/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/tmp.H1SiSt/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/tmp.H1SiSt/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/tmp.H1SiSt/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/tmp.H1SiSt/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2879 values in range Counting number of voxels in first frame Found 2878 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 2878 2878.000000 129240 2.226865 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA002 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: -28.13 24.52 33.40 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Found 2879 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA002 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2879 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2879 nlabel points Performing mapping from target back to the source label 129240 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.label 16409 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.stats sub-BANDA002 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white... Using TH3 vertex volume calc Total face volume 278288 Total vertex volume 274927 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.label" number of vertices = 8039 total surface area = 5385 mm^2 total gray matter volume = 14868 mm^3 average cortical thickness = 2.759 mm +- 0.522 mm average integrated rectified mean curvature = 0.123 average integrated rectified Gaussian curvature = 0.026 folding index = 92 intrinsic curvature index = 8.7 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 38988 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.mgz Dim: 129240 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.mgz Thu Jul 13 12:44:55 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/tmp.ofifb3/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/tmp.ofifb3/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/tmp.ofifb3/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/tmp.ofifb3/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/tmp.ofifb3/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/tmp.ofifb3/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/tmp.ofifb3/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/tmp.ofifb3/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/tmp.ofifb3/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 3598 values in range Counting number of voxels in first frame Found 3597 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 3597 3597.000000 129240 2.783194 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA002 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: -33.00 -63.93 18.12 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Found 3598 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA002 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 3598 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3598 nlabel points Performing mapping from target back to the source label 129240 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.label 13730 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.stats sub-BANDA002 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white... Using TH3 vertex volume calc Total face volume 278288 Total vertex volume 274927 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.label" number of vertices = 8213 total surface area = 5583 mm^2 total gray matter volume = 16711 mm^3 average cortical thickness = 2.737 mm +- 0.617 mm average integrated rectified mean curvature = 0.119 average integrated rectified Gaussian curvature = 0.023 folding index = 97 intrinsic curvature index = 7.4 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit --path rh.slf2 --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit --path rh.slf2 --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit Pathway name: rh.slf2 Subject name: sub-BANDA002 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr... Done in 0.779 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 39098 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.mgz Dim: 128775 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.mgz Thu Jul 13 12:45:15 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/tmp.LiFA9W/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/tmp.LiFA9W/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/tmp.LiFA9W/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/tmp.LiFA9W/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/tmp.LiFA9W/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/tmp.LiFA9W/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/tmp.LiFA9W/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/tmp.LiFA9W/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/tmp.LiFA9W/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 3204 values in range Counting number of voxels in first frame Found 3203 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 3203 3203.000000 128775 2.487284 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA002 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: 23.78 25.43 37.18 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Found 3204 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA002 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 3204 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3204 nlabel points Performing mapping from target back to the source label 128775 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.label 13820 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.stats sub-BANDA002 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white... Using TH3 vertex volume calc Total face volume 270308 Total vertex volume 266908 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.label" number of vertices = 7499 total surface area = 5173 mm^2 total gray matter volume = 15474 mm^3 average cortical thickness = 2.699 mm +- 0.566 mm average integrated rectified mean curvature = 0.132 average integrated rectified Gaussian curvature = 0.029 folding index = 107 intrinsic curvature index = 9.3 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 39098 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.mgz Dim: 128775 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.mgz Thu Jul 13 12:45:35 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/tmp.u55aVk/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/tmp.u55aVk/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/tmp.u55aVk/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/tmp.u55aVk/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/tmp.u55aVk/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/tmp.u55aVk/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/tmp.u55aVk/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/tmp.u55aVk/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/tmp.u55aVk/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 3556 values in range Counting number of voxels in first frame Found 3555 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 3555 3555.000000 128775 2.760629 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA002 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: 36.60 -60.34 25.81 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Found 3556 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA002 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 3556 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3556 nlabel points Performing mapping from target back to the source label 128775 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.label 13909 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.stats sub-BANDA002 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white... Using TH3 vertex volume calc Total face volume 270308 Total vertex volume 266908 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.label" number of vertices = 8363 total surface area = 5552 mm^2 total gray matter volume = 15697 mm^3 average cortical thickness = 2.699 mm +- 0.577 mm average integrated rectified mean curvature = 0.122 average integrated rectified Gaussian curvature = 0.023 folding index = 99 intrinsic curvature index = 7.9 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit --path lh.slf3 --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit --path lh.slf3 --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit Pathway name: lh.slf3 Subject name: sub-BANDA002 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr... Done in 0.787 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 38988 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.mgz Dim: 129240 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.mgz Thu Jul 13 12:45:55 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/tmp.YzHqrc/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/tmp.YzHqrc/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/tmp.YzHqrc/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/tmp.YzHqrc/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/tmp.YzHqrc/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/tmp.YzHqrc/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/tmp.YzHqrc/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/tmp.YzHqrc/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/tmp.YzHqrc/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2269 values in range Counting number of voxels in first frame Found 2268 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 2268 2268.000000 129240 1.754875 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA002 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: -36.11 15.20 25.96 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Found 2269 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA002 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2269 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2269 nlabel points Performing mapping from target back to the source label 129240 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.label 9694 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.stats sub-BANDA002 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white... Using TH3 vertex volume calc Total face volume 278288 Total vertex volume 274927 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.label" number of vertices = 4844 total surface area = 3219 mm^2 total gray matter volume = 9063 mm^3 average cortical thickness = 2.830 mm +- 0.518 mm average integrated rectified mean curvature = 0.122 average integrated rectified Gaussian curvature = 0.025 folding index = 47 intrinsic curvature index = 4.9 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 38988 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.mgz Dim: 129240 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.mgz Thu Jul 13 12:46:14 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/tmp.gqTk5u/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/tmp.gqTk5u/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/tmp.gqTk5u/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/tmp.gqTk5u/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/tmp.gqTk5u/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/tmp.gqTk5u/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/tmp.gqTk5u/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/tmp.gqTk5u/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/tmp.gqTk5u/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2813 values in range Counting number of voxels in first frame Found 2812 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 2812 2812.000000 129240 2.175797 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA002 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: -41.65 -45.58 24.28 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Found 2813 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA002 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2813 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2813 nlabel points Performing mapping from target back to the source label 129240 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.label 13082 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.stats sub-BANDA002 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white... Using TH3 vertex volume calc Total face volume 278288 Total vertex volume 274927 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.label" number of vertices = 7453 total surface area = 4966 mm^2 total gray matter volume = 14404 mm^3 average cortical thickness = 2.770 mm +- 0.586 mm average integrated rectified mean curvature = 0.122 average integrated rectified Gaussian curvature = 0.023 folding index = 92 intrinsic curvature index = 6.9 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit --path rh.slf3 --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit --path rh.slf3 --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit Pathway name: rh.slf3 Subject name: sub-BANDA002 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr... Done in 0.773 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 39098 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.mgz Dim: 128775 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.mgz Thu Jul 13 12:46:35 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/tmp.nTJai1/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/tmp.nTJai1/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/tmp.nTJai1/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/tmp.nTJai1/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/tmp.nTJai1/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/tmp.nTJai1/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/tmp.nTJai1/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/tmp.nTJai1/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/tmp.nTJai1/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 3264 values in range Counting number of voxels in first frame Found 3263 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 3263 3263.000000 128775 2.533877 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA002 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: 32.71 19.15 31.38 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Found 3264 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA002 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 3264 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3264 nlabel points Performing mapping from target back to the source label 128775 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.label 11800 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.stats sub-BANDA002 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white... Using TH3 vertex volume calc Total face volume 270308 Total vertex volume 266908 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.label" number of vertices = 7697 total surface area = 5245 mm^2 total gray matter volume = 16574 mm^3 average cortical thickness = 2.844 mm +- 0.599 mm average integrated rectified mean curvature = 0.130 average integrated rectified Gaussian curvature = 0.028 folding index = 111 intrinsic curvature index = 9.2 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 39098 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.mgz Dim: 128775 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.mgz Thu Jul 13 12:46:55 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/tmp.dsenwY/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/tmp.dsenwY/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/tmp.dsenwY/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/tmp.dsenwY/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/tmp.dsenwY/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/tmp.dsenwY/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/tmp.dsenwY/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/tmp.dsenwY/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/tmp.dsenwY/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 3216 values in range Counting number of voxels in first frame Found 3215 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 3215 3215.000000 128775 2.496603 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA002 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: 37.50 -50.27 31.79 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Found 3216 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA002 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 3216 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3216 nlabel points Performing mapping from target back to the source label 128775 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.label 13640 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.stats sub-BANDA002 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white... Using TH3 vertex volume calc Total face volume 270308 Total vertex volume 266908 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.label" number of vertices = 8185 total surface area = 5384 mm^2 total gray matter volume = 14799 mm^3 average cortical thickness = 2.691 mm +- 0.530 mm average integrated rectified mean curvature = 0.119 average integrated rectified Gaussian curvature = 0.024 folding index = 87 intrinsic curvature index = 7.8 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit --path lh.uf --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit --path lh.uf --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit Pathway name: lh.uf Subject name: sub-BANDA002 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr... Done in 0.771 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 38988 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.mgz Dim: 129240 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.mgz Thu Jul 13 12:47:15 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/tmp.hKUXRJ/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/tmp.hKUXRJ/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/tmp.hKUXRJ/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/tmp.hKUXRJ/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/tmp.hKUXRJ/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/tmp.hKUXRJ/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/tmp.hKUXRJ/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/tmp.hKUXRJ/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/tmp.hKUXRJ/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2298 values in range Counting number of voxels in first frame Found 2297 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 2297 2297.000000 129240 1.777314 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA002 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: -18.00 49.32 19.47 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Found 2298 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA002 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2298 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2298 nlabel points Performing mapping from target back to the source label 129240 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.label 7573 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.stats sub-BANDA002 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white... Using TH3 vertex volume calc Total face volume 278288 Total vertex volume 274927 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.label" number of vertices = 5437 total surface area = 3743 mm^2 total gray matter volume = 13585 mm^3 average cortical thickness = 2.903 mm +- 0.677 mm average integrated rectified mean curvature = 0.153 average integrated rectified Gaussian curvature = 0.039 folding index = 115 intrinsic curvature index = 8.4 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 38988 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.mgz Dim: 129240 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.mgz Thu Jul 13 12:47:34 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/tmp.6inKO7/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/tmp.6inKO7/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/tmp.6inKO7/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/tmp.6inKO7/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/tmp.6inKO7/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/tmp.6inKO7/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/tmp.6inKO7/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/tmp.6inKO7/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/tmp.6inKO7/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2077 values in range Counting number of voxels in first frame Found 2076 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 2076 2076.000000 129240 1.606314 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA002 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: -35.87 7.79 -14.88 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Found 2077 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA002 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2077 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2077 nlabel points Performing mapping from target back to the source label 129240 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.label 4323 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.stats sub-BANDA002 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/lh.white... Using TH3 vertex volume calc Total face volume 278288 Total vertex volume 274927 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.label" number of vertices = 3002 total surface area = 2083 mm^2 total gray matter volume = 10406 mm^3 average cortical thickness = 3.661 mm +- 0.748 mm average integrated rectified mean curvature = 0.148 average integrated rectified Gaussian curvature = 0.044 folding index = 59 intrinsic curvature index = 5.6 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit --path rh.uf --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit --path rh.uf --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/dtifit Pathway name: rh.uf Subject name: sub-BANDA002 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr... Done in 0.771 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 39098 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.mgz Dim: 128775 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.mgz Thu Jul 13 12:47:55 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/tmp.xBQ7Bw/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/tmp.xBQ7Bw/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/tmp.xBQ7Bw/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/tmp.xBQ7Bw/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/tmp.xBQ7Bw/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/tmp.xBQ7Bw/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/tmp.xBQ7Bw/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/tmp.xBQ7Bw/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/tmp.xBQ7Bw/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2391 values in range Counting number of voxels in first frame Found 2390 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 2390 2390.000000 128775 1.855950 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA002 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: 9.79 48.58 17.13 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Found 2391 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA002 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2391 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2391 nlabel points Performing mapping from target back to the source label 128775 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.label 7254 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.stats sub-BANDA002 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white... Using TH3 vertex volume calc Total face volume 270308 Total vertex volume 266908 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.label" number of vertices = 4769 total surface area = 3248 mm^2 total gray matter volume = 11639 mm^3 average cortical thickness = 3.002 mm +- 0.745 mm average integrated rectified mean curvature = 0.151 average integrated rectified Gaussian curvature = 0.037 folding index = 108 intrinsic curvature index = 7.3 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 39098 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.mgz Dim: 128775 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.mgz Thu Jul 13 12:48:14 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/tmp.H6FBZK/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/tmp.H6FBZK/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/tmp.H6FBZK/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/tmp.H6FBZK/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/tmp.H6FBZK/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/tmp.H6FBZK/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/tmp.H6FBZK/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/tmp.H6FBZK/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/tmp.H6FBZK/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2404 values in range Counting number of voxels in first frame Found 2403 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 2403 2403.000000 128775 1.866045 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA002 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: 35.28 11.92 -8.65 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Found 2404 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA002 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2404 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2404 nlabel points Performing mapping from target back to the source label 128775 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.label 5222 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.stats sub-BANDA002 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA002/surf/rh.white... Using TH3 vertex volume calc Total face volume 270308 Total vertex volume 266908 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.label" number of vertices = 3580 total surface area = 2486 mm^2 total gray matter volume = 11141 mm^3 average cortical thickness = 3.591 mm +- 0.830 mm average integrated rectified mean curvature = 0.140 average integrated rectified Gaussian curvature = 0.038 folding index = 67 intrinsic curvature index = 5.2 /usr/local/freesurfer/7.3.2//bin/dmri_mergepaths --indir /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath --in acomm_avg16_syn_bbr/path.pd.nii.gz cc.bodyc_avg16_syn_bbr/path.pd.nii.gz cc.bodyp_avg16_syn_bbr/path.pd.nii.gz cc.bodypf_avg16_syn_bbr/path.pd.nii.gz cc.bodypm_avg16_syn_bbr/path.pd.nii.gz cc.bodyt_avg16_syn_bbr/path.pd.nii.gz cc.genu_avg16_syn_bbr/path.pd.nii.gz cc.rostrum_avg16_syn_bbr/path.pd.nii.gz cc.splenium_avg16_syn_bbr/path.pd.nii.gz lh.af_avg16_syn_bbr/path.pd.nii.gz lh.ar_avg16_syn_bbr/path.pd.nii.gz lh.atr_avg16_syn_bbr/path.pd.nii.gz lh.cbd_avg16_syn_bbr/path.pd.nii.gz lh.cbv_avg16_syn_bbr/path.pd.nii.gz lh.cst_avg16_syn_bbr/path.pd.nii.gz lh.emc_avg16_syn_bbr/path.pd.nii.gz lh.fat_avg16_syn_bbr/path.pd.nii.gz lh.fx_avg16_syn_bbr/path.pd.nii.gz lh.ilf_avg16_syn_bbr/path.pd.nii.gz lh.mlf_avg16_syn_bbr/path.pd.nii.gz lh.or_avg16_syn_bbr/path.pd.nii.gz lh.slf1_avg16_syn_bbr/path.pd.nii.gz lh.slf2_avg16_syn_bbr/path.pd.nii.gz lh.slf3_avg16_syn_bbr/path.pd.nii.gz lh.uf_avg16_syn_bbr/path.pd.nii.gz mcp_avg16_syn_bbr/path.pd.nii.gz rh.af_avg16_syn_bbr/path.pd.nii.gz rh.ar_avg16_syn_bbr/path.pd.nii.gz rh.atr_avg16_syn_bbr/path.pd.nii.gz rh.cbd_avg16_syn_bbr/path.pd.nii.gz rh.cbv_avg16_syn_bbr/path.pd.nii.gz rh.cst_avg16_syn_bbr/path.pd.nii.gz rh.emc_avg16_syn_bbr/path.pd.nii.gz rh.fat_avg16_syn_bbr/path.pd.nii.gz rh.fx_avg16_syn_bbr/path.pd.nii.gz rh.ilf_avg16_syn_bbr/path.pd.nii.gz rh.mlf_avg16_syn_bbr/path.pd.nii.gz rh.or_avg16_syn_bbr/path.pd.nii.gz rh.slf1_avg16_syn_bbr/path.pd.nii.gz rh.slf2_avg16_syn_bbr/path.pd.nii.gz rh.slf3_avg16_syn_bbr/path.pd.nii.gz rh.uf_avg16_syn_bbr/path.pd.nii.gz --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/merged_avg16_syn_bbr.mgz --ctab /usr/local/freesurfer/7.3.2//FreeSurferColorLUT.txt --thresh .2 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_mergepaths --indir /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath --in acomm_avg16_syn_bbr/path.pd.nii.gz cc.bodyc_avg16_syn_bbr/path.pd.nii.gz cc.bodyp_avg16_syn_bbr/path.pd.nii.gz cc.bodypf_avg16_syn_bbr/path.pd.nii.gz cc.bodypm_avg16_syn_bbr/path.pd.nii.gz cc.bodyt_avg16_syn_bbr/path.pd.nii.gz cc.genu_avg16_syn_bbr/path.pd.nii.gz cc.rostrum_avg16_syn_bbr/path.pd.nii.gz cc.splenium_avg16_syn_bbr/path.pd.nii.gz lh.af_avg16_syn_bbr/path.pd.nii.gz lh.ar_avg16_syn_bbr/path.pd.nii.gz lh.atr_avg16_syn_bbr/path.pd.nii.gz lh.cbd_avg16_syn_bbr/path.pd.nii.gz lh.cbv_avg16_syn_bbr/path.pd.nii.gz lh.cst_avg16_syn_bbr/path.pd.nii.gz lh.emc_avg16_syn_bbr/path.pd.nii.gz lh.fat_avg16_syn_bbr/path.pd.nii.gz lh.fx_avg16_syn_bbr/path.pd.nii.gz lh.ilf_avg16_syn_bbr/path.pd.nii.gz lh.mlf_avg16_syn_bbr/path.pd.nii.gz lh.or_avg16_syn_bbr/path.pd.nii.gz lh.slf1_avg16_syn_bbr/path.pd.nii.gz lh.slf2_avg16_syn_bbr/path.pd.nii.gz lh.slf3_avg16_syn_bbr/path.pd.nii.gz lh.uf_avg16_syn_bbr/path.pd.nii.gz mcp_avg16_syn_bbr/path.pd.nii.gz rh.af_avg16_syn_bbr/path.pd.nii.gz rh.ar_avg16_syn_bbr/path.pd.nii.gz rh.atr_avg16_syn_bbr/path.pd.nii.gz rh.cbd_avg16_syn_bbr/path.pd.nii.gz rh.cbv_avg16_syn_bbr/path.pd.nii.gz rh.cst_avg16_syn_bbr/path.pd.nii.gz rh.emc_avg16_syn_bbr/path.pd.nii.gz rh.fat_avg16_syn_bbr/path.pd.nii.gz rh.fx_avg16_syn_bbr/path.pd.nii.gz rh.ilf_avg16_syn_bbr/path.pd.nii.gz rh.mlf_avg16_syn_bbr/path.pd.nii.gz rh.or_avg16_syn_bbr/path.pd.nii.gz rh.slf1_avg16_syn_bbr/path.pd.nii.gz rh.slf2_avg16_syn_bbr/path.pd.nii.gz rh.slf3_avg16_syn_bbr/path.pd.nii.gz rh.uf_avg16_syn_bbr/path.pd.nii.gz --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/merged_avg16_syn_bbr.mgz --ctab /usr/local/freesurfer/7.3.2//FreeSurferColorLUT.txt --thresh .2 sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Input directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath Input files: acomm_avg16_syn_bbr/path.pd.nii.gz cc.bodyc_avg16_syn_bbr/path.pd.nii.gz cc.bodyp_avg16_syn_bbr/path.pd.nii.gz cc.bodypf_avg16_syn_bbr/path.pd.nii.gz cc.bodypm_avg16_syn_bbr/path.pd.nii.gz cc.bodyt_avg16_syn_bbr/path.pd.nii.gz cc.genu_avg16_syn_bbr/path.pd.nii.gz cc.rostrum_avg16_syn_bbr/path.pd.nii.gz cc.splenium_avg16_syn_bbr/path.pd.nii.gz lh.af_avg16_syn_bbr/path.pd.nii.gz lh.ar_avg16_syn_bbr/path.pd.nii.gz lh.atr_avg16_syn_bbr/path.pd.nii.gz lh.cbd_avg16_syn_bbr/path.pd.nii.gz lh.cbv_avg16_syn_bbr/path.pd.nii.gz lh.cst_avg16_syn_bbr/path.pd.nii.gz lh.emc_avg16_syn_bbr/path.pd.nii.gz lh.fat_avg16_syn_bbr/path.pd.nii.gz lh.fx_avg16_syn_bbr/path.pd.nii.gz lh.ilf_avg16_syn_bbr/path.pd.nii.gz lh.mlf_avg16_syn_bbr/path.pd.nii.gz lh.or_avg16_syn_bbr/path.pd.nii.gz lh.slf1_avg16_syn_bbr/path.pd.nii.gz lh.slf2_avg16_syn_bbr/path.pd.nii.gz lh.slf3_avg16_syn_bbr/path.pd.nii.gz lh.uf_avg16_syn_bbr/path.pd.nii.gz mcp_avg16_syn_bbr/path.pd.nii.gz rh.af_avg16_syn_bbr/path.pd.nii.gz rh.ar_avg16_syn_bbr/path.pd.nii.gz rh.atr_avg16_syn_bbr/path.pd.nii.gz rh.cbd_avg16_syn_bbr/path.pd.nii.gz rh.cbv_avg16_syn_bbr/path.pd.nii.gz rh.cst_avg16_syn_bbr/path.pd.nii.gz rh.emc_avg16_syn_bbr/path.pd.nii.gz rh.fat_avg16_syn_bbr/path.pd.nii.gz rh.fx_avg16_syn_bbr/path.pd.nii.gz rh.ilf_avg16_syn_bbr/path.pd.nii.gz rh.mlf_avg16_syn_bbr/path.pd.nii.gz rh.or_avg16_syn_bbr/path.pd.nii.gz rh.slf1_avg16_syn_bbr/path.pd.nii.gz rh.slf2_avg16_syn_bbr/path.pd.nii.gz rh.slf3_avg16_syn_bbr/path.pd.nii.gz rh.uf_avg16_syn_bbr/path.pd.nii.gz Output file: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA002/dpath/merged_avg16_syn_bbr.mgz Color table file: /autofs/vast/freesurfer/centos7_x86_64/7.3.2/FreeSurferColorLUT.txt Lower threshold for display: 0.200000 Merging volume 1 of 42... Threshold: 25.2 Name: Anterior Commissure Merging volume 2 of 42... Threshold: 12 Name: Corpus Callosum - Body - Central Merging volume 3 of 42... Threshold: 12 Name: Corpus Callosum - Body - Parietal Merging volume 4 of 42... Threshold: 13 Name: Corpus Callosum - Body - Prefrontal Merging volume 5 of 42... Threshold: 9.8 Name: Corpus Callosum - Body - Premotor Merging volume 6 of 42... Threshold: 9.2 Name: Corpus Callosum - Body - Temporal Merging volume 7 of 42... Threshold: 12.6 Name: Corpus Callosum - Genu Merging volume 8 of 42... Threshold: 15.8 Name: Corpus Callosum - Rostrum Merging volume 9 of 42... Threshold: 17.8 Name: Corpus Callosum - Splenium Merging volume 10 of 42... Threshold: 21.4 Name: Left Arcuate Fasciculus Merging volume 11 of 42... Threshold: 50 Name: Left Acoustic Radiation Merging volume 12 of 42... Threshold: 27 Name: Left Anterior Thalamic Radiation Merging volume 13 of 42... Threshold: 47 Name: Left Cingulum Bundle - Dorsal Merging volume 14 of 42... Threshold: 36.2 Name: Left Cingulum Bundle - Ventral Merging volume 15 of 42... Threshold: 17 Name: Left Corticospinal Tract Merging volume 16 of 42... Threshold: 27.2 Name: Left Extreme Capsule Merging volume 17 of 42... Threshold: 22 Name: Left Frontal Aslant Tract Merging volume 18 of 42... Threshold: 23.6 Name: Left Fornix Merging volume 19 of 42... Threshold: 19.2 Name: Left Inferior Longitudinal Fasciculus Merging volume 20 of 42... Threshold: 15.4 Name: Left Middle Longitudinal Fasciculus Merging volume 21 of 42... Threshold: 31 Name: Left Optic Radiation Merging volume 22 of 42... Threshold: 19.8 Name: Left Superior Longitudinal Fasciculus - I Merging volume 23 of 42... Threshold: 17.6 Name: Left Superior Longitudinal Fasciculus - II Merging volume 24 of 42... Threshold: 20.4 Name: Left Superior Longitudinal Fasciculus - III Merging volume 25 of 42... Threshold: 22.8 Name: Left Uncinate Fasciculus Merging volume 26 of 42... Threshold: 7.8 Name: Middle Cerebellar Peduncle Merging volume 27 of 42... Threshold: 21.6 Name: Right Arcuate Fasciculus Merging volume 28 of 42... Threshold: 44 Name: Right Acoustic Radiation Merging volume 29 of 42... Threshold: 44.2 Name: Right Anterior Thalamic Radiation Merging volume 30 of 42... Threshold: 55.4 Name: Right Cingulum Bundle - Dorsal Merging volume 31 of 42... Threshold: 23.4 Name: Right Cingulum Bundle - Ventral Merging volume 32 of 42... Threshold: 19.4 Name: Right Corticospinal Tract Merging volume 33 of 42... Threshold: 21.4 Name: Right Extreme Capsule Merging volume 34 of 42... Threshold: 15.2 Name: Right Frontal Aslant Tract Merging volume 35 of 42... Threshold: 26 Name: Right Fornix Merging volume 36 of 42... Threshold: 14.2 Name: Right Inferior Longitudinal Fasciculus Merging volume 37 of 42... Threshold: 19.4 Name: Right Middle Longitudinal Fasciculus Merging volume 38 of 42... Threshold: 20.8 Name: Right Optic Radiation Merging volume 39 of 42... Threshold: 18 Name: Right Superior Longitudinal Fasciculus - I Merging volume 40 of 42... Threshold: 21.6 Name: Right Superior Longitudinal Fasciculus - II Merging volume 41 of 42... Threshold: 26 Name: Right Superior Longitudinal Fasciculus - III Merging volume 42 of 42... Threshold: 24 Name: Right Uncinate Fasciculus Done in 9.51 sec. dmri_mergepaths done #------------------------------------- trac-paths finished without error at Thu Jul 13 12:48:41 EDT 2023 New invocation of trac-all Fri Jul 14 12:21:18 EDT 2023 /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/trac-all -path -c dmrirc.rerun Subject sub-BANDA002 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Actual FREESURFER_HOME /autofs/vast/freesurfer/centos7_x86_64/7.3.2 build-stamp.txt: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 erd37 atalanta.nmr.mgh.harvard.edu Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 131070 memorylocked unlimited maxproc 32768 maxlocks unlimited maxsignal 2062265 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 527971832 119614820 255155932 230592 153201080 406696628 Swap: 67108860 0 67108860 ######################################## Program versions: trac-all 7.3.2 mri_convert --all-info ProgramName: mri_convert ProgramArguments: mri_convert --all-info ProgramVersion: 7.3.2 TimeStamp: 2023/07/14-16:21:18-GMT BuildTime: Aug 4 2022 00:15:18 BuildStamp: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 User: erd37 Machine: atalanta.nmr.mgh.harvard.edu Platform: Linux PlatformVersion: 3.10.0-1160.92.1.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5 FLIRT version 6.0 bbregister 7.3.2 mri_cvs_register 7.3.2 ProgramName: dmri_motion ProgramArguments: /usr/local/freesurfer/7.3.2//bin/dmri_motion --all-info ProgramVersion: 7.3.2 TimeStamp: 2023/07/14-16:21:18-GMT BuildTime: Aug 4 2022 00:15:18 BuildStamp: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 User: erd37 Machine: atalanta.nmr.mgh.harvard.edu Platform: Linux PlatformVersion: 3.10.0-1160.92.1.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: dmri_train ProgramArguments: /usr/local/freesurfer/7.3.2//bin/dmri_train --all-info ProgramVersion: 7.3.2 TimeStamp: 2023/07/14-16:21:18-GMT BuildTime: Aug 4 2022 00:15:18 BuildStamp: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 User: erd37 Machine: atalanta.nmr.mgh.harvard.edu Platform: Linux PlatformVersion: 3.10.0-1160.92.1.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: dmri_paths ProgramArguments: /usr/local/freesurfer/7.3.2//bin/dmri_paths --all-info ProgramVersion: 7.3.2 TimeStamp: 2023/07/14-16:21:18-GMT BuildTime: Aug 4 2022 00:15:18 BuildStamp: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 User: erd37 Machine: atalanta.nmr.mgh.harvard.edu Platform: Linux PlatformVersion: 3.10.0-1160.92.1.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: dmri_pathstats ProgramArguments: /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --all-info ProgramVersion: 7.3.2 TimeStamp: 2023/07/14-16:21:18-GMT BuildTime: Aug 4 2022 00:15:18 BuildStamp: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 User: erd37 Machine: atalanta.nmr.mgh.harvard.edu Platform: Linux PlatformVersion: 3.10.0-1160.92.1.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: dmri_mergepaths ProgramArguments: /usr/local/freesurfer/7.3.2//bin/dmri_mergepaths --all-info ProgramVersion: 7.3.2 TimeStamp: 2023/07/14-16:21:18-GMT BuildTime: Aug 4 2022 00:15:18 BuildStamp: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 User: erd37 Machine: atalanta.nmr.mgh.harvard.edu Platform: Linux PlatformVersion: 3.10.0-1160.92.1.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: dmri_group ProgramArguments: /usr/local/freesurfer/7.3.2//bin/dmri_group --all-info ProgramVersion: 7.3.2 TimeStamp: 2023/07/14-16:21:18-GMT BuildTime: Aug 4 2022 00:15:18 BuildStamp: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 User: erd37 Machine: atalanta.nmr.mgh.harvard.edu Platform: Linux PlatformVersion: 3.10.0-1160.92.1.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5 INFO: current FREESURFER_HOME does not match that of previous processing. Current: /usr/local/freesurfer/7.3.2/ Previous: /usr/local/freesurfer/7.3.2 New invocation of trac-paths erd37 atalanta.nmr.mgh.harvard.edu Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse 7340032 kbytes descriptors 32768 memorylocked unlimited maxproc 2062265 maxlocks unlimited maxsignal 2062265 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 527971832 122480844 249867400 230540 155623588 403830660 Swap: 67108860 0 67108860 #------------------------------------- /usr/local/freesurfer/7.3.2//bin/trac-paths #------------------------------------- #@# DWI set selection Fri Jul 14 12:21:52 EDT 2023 ln -sf dwi.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/data.nii.gz ln -sf dwi.bvecs /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/bvecs ln -sf dwi.bvals /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/bvals #------------------------------------- #@# Path reconstruction Fri Jul 14 12:21:52 EDT 2023 rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/mcp_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.or_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.or_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr /usr/local/freesurfer/7.3.2//bin/dmri_paths --outdir /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/mcp_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr 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/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/cc.bodyc_avg16_syn_bbr_cpts_8.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/cc.bodyp_avg16_syn_bbr_cpts_9.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/cc.bodypf_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/cc.bodypm_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/cc.bodyt_avg16_syn_bbr_cpts_12.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/cc.genu_avg16_syn_bbr_cpts_5.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/cc.rostrum_avg16_syn_bbr_cpts_5.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/cc.splenium_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/mcp_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/lh.af_avg16_syn_bbr_cpts_9.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/rh.af_avg16_syn_bbr_cpts_9.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/lh.ar_avg16_syn_bbr_cpts_4.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/rh.ar_avg16_syn_bbr_cpts_4.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/lh.atr_avg16_syn_bbr_cpts_4.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/rh.atr_avg16_syn_bbr_cpts_4.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/lh.cbd_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/rh.cbd_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/lh.cbv_avg16_syn_bbr_cpts_5.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/rh.cbv_avg16_syn_bbr_cpts_5.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/lh.cst_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/rh.cst_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/lh.emc_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/rh.emc_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/lh.fat_avg16_syn_bbr_cpts_5.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/rh.fat_avg16_syn_bbr_cpts_5.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/lh.fx_avg16_syn_bbr_cpts_9.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/rh.fx_avg16_syn_bbr_cpts_9.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/lh.ilf_avg16_syn_bbr_cpts_8.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/rh.ilf_avg16_syn_bbr_cpts_8.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/lh.mlf_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/rh.mlf_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/lh.or_avg16_syn_bbr_cpts_5.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/rh.or_avg16_syn_bbr_cpts_5.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/lh.slf1_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/rh.slf1_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/lh.slf2_avg16_syn_bbr_cpts_8.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/rh.slf2_avg16_syn_bbr_cpts_8.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/lh.slf3_avg16_syn_bbr_cpts_6.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/rh.slf3_avg16_syn_bbr_cpts_6.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/lh.uf_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/rh.uf_avg16_syn_bbr_cpts_7.txt --nprior /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnids_all --lprior /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsprior_all 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/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/lh.uf_avg16_syn_bbr_cpts_7_std.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/rh.uf_avg16_syn_bbr_cpts_7_std.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_paths --outdir /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr 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/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/lh.af_avg16_syn_bbr_cpts_9.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/rh.af_avg16_syn_bbr_cpts_9.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/lh.ar_avg16_syn_bbr_cpts_4.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/rh.ar_avg16_syn_bbr_cpts_4.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/lh.atr_avg16_syn_bbr_cpts_4.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/rh.atr_avg16_syn_bbr_cpts_4.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/lh.cbd_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/rh.cbd_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/lh.cbv_avg16_syn_bbr_cpts_5.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/rh.cbv_avg16_syn_bbr_cpts_5.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/lh.cst_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/rh.cst_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/lh.emc_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/rh.emc_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/lh.fat_avg16_syn_bbr_cpts_5.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/rh.fat_avg16_syn_bbr_cpts_5.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/lh.fx_avg16_syn_bbr_cpts_9.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/rh.fx_avg16_syn_bbr_cpts_9.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/lh.ilf_avg16_syn_bbr_cpts_8.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/rh.ilf_avg16_syn_bbr_cpts_8.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/lh.mlf_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/rh.mlf_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/lh.or_avg16_syn_bbr_cpts_5.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/rh.or_avg16_syn_bbr_cpts_5.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/lh.slf1_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/rh.slf1_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/lh.slf2_avg16_syn_bbr_cpts_8.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/rh.slf2_avg16_syn_bbr_cpts_8.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/lh.slf3_avg16_syn_bbr_cpts_6.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/rh.slf3_avg16_syn_bbr_cpts_6.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/lh.uf_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/rh.uf_avg16_syn_bbr_cpts_7.txt --nprior /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnids_all --lprior /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsids_all 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/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.or_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.or_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr DWIs: /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/data.nii.gz Gradients: /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/bvecs B-values: /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/bvals Mask: /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/aparc+aseg_mask.bbr.nii.gz BEDPOST directory: /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri.bedpostX Max number of tracts per voxel: 2 Tract volume fraction threshold: 0.05 Initial control point file: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/acomm_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/cc.bodyc_avg16_syn_bbr_cpts_8.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/cc.bodyp_avg16_syn_bbr_cpts_9.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/cc.bodypf_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/cc.bodypm_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/cc.bodyt_avg16_syn_bbr_cpts_12.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/cc.genu_avg16_syn_bbr_cpts_5.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/cc.rostrum_avg16_syn_bbr_cpts_5.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/cc.splenium_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/mcp_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/lh.af_avg16_syn_bbr_cpts_9.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/rh.af_avg16_syn_bbr_cpts_9.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/lh.ar_avg16_syn_bbr_cpts_4.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/rh.ar_avg16_syn_bbr_cpts_4.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/lh.atr_avg16_syn_bbr_cpts_4.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/rh.atr_avg16_syn_bbr_cpts_4.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/lh.cbd_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/rh.cbd_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/lh.cbv_avg16_syn_bbr_cpts_5.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/rh.cbv_avg16_syn_bbr_cpts_5.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/lh.cst_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/rh.cst_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/lh.emc_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/rh.emc_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/lh.fat_avg16_syn_bbr_cpts_5.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/rh.fat_avg16_syn_bbr_cpts_5.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/lh.fx_avg16_syn_bbr_cpts_9.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/rh.fx_avg16_syn_bbr_cpts_9.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/lh.ilf_avg16_syn_bbr_cpts_8.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/rh.ilf_avg16_syn_bbr_cpts_8.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/lh.mlf_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/rh.mlf_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/lh.or_avg16_syn_bbr_cpts_5.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/rh.or_avg16_syn_bbr_cpts_5.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/lh.slf1_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/rh.slf1_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/lh.slf2_avg16_syn_bbr_cpts_8.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/rh.slf2_avg16_syn_bbr_cpts_8.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/lh.slf3_avg16_syn_bbr_cpts_6.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/rh.slf3_avg16_syn_bbr_cpts_6.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/lh.uf_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/rh.uf_avg16_syn_bbr_cpts_7.txt End ROI 1: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_end1_dil.nii.gz End ROI 2: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_end2_dil.nii.gz Neighbor aseg prior: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnprior_all Neighbor aseg label ID list: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnids_all Neighbor aseg prior set: 14 Local aseg prior: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsprior_all Local aseg label ID list: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsids_all Local aseg prior set: 15 Segmentation map: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/aparc+aseg+thalnuc.nii.gz DWI-to-atlas affine registration: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dmri/xfms/diff2syn.lta DWI-to-atlas nonlinear registration: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dmri/xfms/syn_warp.m3z Number of burn-in samples: 200 Number of post-burn-in samples: 7500 Keep every: 5-th sample Update proposal every: 0-th sample Initial proposal SD file: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/acomm_avg16_syn_bbr_cpts_7_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/cc.bodyc_avg16_syn_bbr_cpts_8_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/cc.bodyp_avg16_syn_bbr_cpts_9_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/cc.bodypf_avg16_syn_bbr_cpts_7_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/cc.bodypm_avg16_syn_bbr_cpts_7_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/cc.bodyt_avg16_syn_bbr_cpts_12_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/cc.genu_avg16_syn_bbr_cpts_5_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/cc.rostrum_avg16_syn_bbr_cpts_5_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/cc.splenium_avg16_syn_bbr_cpts_7_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/mcp_avg16_syn_bbr_cpts_7_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/lh.af_avg16_syn_bbr_cpts_9_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/rh.af_avg16_syn_bbr_cpts_9_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/lh.ar_avg16_syn_bbr_cpts_4_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/rh.ar_avg16_syn_bbr_cpts_4_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/lh.atr_avg16_syn_bbr_cpts_4_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/rh.atr_avg16_syn_bbr_cpts_4_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/lh.cbd_avg16_syn_bbr_cpts_7_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/rh.cbd_avg16_syn_bbr_cpts_7_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/lh.cbv_avg16_syn_bbr_cpts_5_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/rh.cbv_avg16_syn_bbr_cpts_5_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/lh.cst_avg16_syn_bbr_cpts_7_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/rh.cst_avg16_syn_bbr_cpts_7_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/lh.emc_avg16_syn_bbr_cpts_7_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/rh.emc_avg16_syn_bbr_cpts_7_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/lh.fat_avg16_syn_bbr_cpts_5_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/rh.fat_avg16_syn_bbr_cpts_5_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/lh.fx_avg16_syn_bbr_cpts_9_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/rh.fx_avg16_syn_bbr_cpts_9_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/lh.ilf_avg16_syn_bbr_cpts_8_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/rh.ilf_avg16_syn_bbr_cpts_8_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/lh.mlf_avg16_syn_bbr_cpts_7_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/rh.mlf_avg16_syn_bbr_cpts_7_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/lh.or_avg16_syn_bbr_cpts_5_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/rh.or_avg16_syn_bbr_cpts_5_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/lh.slf1_avg16_syn_bbr_cpts_7_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/rh.slf1_avg16_syn_bbr_cpts_7_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/lh.slf2_avg16_syn_bbr_cpts_8_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/rh.slf2_avg16_syn_bbr_cpts_8_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/lh.slf3_avg16_syn_bbr_cpts_6_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/rh.slf3_avg16_syn_bbr_cpts_6_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/lh.uf_avg16_syn_bbr_cpts_7_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/rh.uf_avg16_syn_bbr_cpts_7_std.txt Loading DWIs from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/data.nii.gz Loading mask from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/aparc+aseg_mask.bbr.nii.gz Loading BEDPOST parameter samples from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri.bedpostX Loading b-values from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/bvals Loading gradients from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/bvecs INFO: Found 28 baseline images (b = 5) out of a total of 398 frames INFO: Found 422308 voxels in brain mask INFO: Resolution of DWI space relative to base space is (1, 1, 1) Loading atlas reference volume from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_end1_dil.nii.gz Loading affine registration from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dmri/xfms/diff2syn.lta LTA registration format detected FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -3.375, ref det = -3.375 Loading non-linear registration from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dmri/xfms/syn_warp.m3z setting orig areas to linear transform determinant scaled 1.00 Reading morph inverse Reading /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dmri/xfms/syn_warp.m3z.inv.x.mgz Reading /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dmri/xfms/syn_warp.m3z.inv.y.mgz Reading /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dmri/xfms/syn_warp.m3z.inv.z.mgz Loading segmentation map from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/aparc+aseg+thalnuc.nii.gz Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/acomm_avg16_syn_bbr_cpts_7.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/acomm_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/acomm_avg16_syn_bbr_cpts_7_std.txt Processing pathway 1 of 42... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Success after 5 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr Done in 365.695 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/cc.bodyc_avg16_syn_bbr_cpts_8.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/cc.bodyc_avg16_syn_bbr_cpts_8_std.txt Processing pathway 2 of 42... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr Done in 460.726 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/cc.bodyp_avg16_syn_bbr_cpts_9.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/cc.bodyp_avg16_syn_bbr_cpts_9_std.txt Processing pathway 3 of 42... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Success after 1 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr Done in 566.563 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/cc.bodypf_avg16_syn_bbr_cpts_7.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/cc.bodypf_avg16_syn_bbr_cpts_7_std.txt Processing pathway 4 of 42... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr Done in 385.994 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/cc.bodypm_avg16_syn_bbr_cpts_7.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/cc.bodypm_avg16_syn_bbr_cpts_7_std.txt Processing pathway 5 of 42... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr Done in 383.511 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/cc.bodyt_avg16_syn_bbr_cpts_12.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/cc.bodyt_avg16_syn_bbr_cpts_12_std.txt Processing pathway 6 of 42... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr Done in 858.655 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/cc.genu_avg16_syn_bbr_cpts_5.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.genu_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/cc.genu_avg16_syn_bbr_cpts_5_std.txt Processing pathway 7 of 42... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr Done in 231.877 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/cc.rostrum_avg16_syn_bbr_cpts_5.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/cc.rostrum_avg16_syn_bbr_cpts_5_std.txt Processing pathway 8 of 42... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr Done in 226.627 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/cc.splenium_avg16_syn_bbr_cpts_7.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/cc.splenium_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/cc.splenium_avg16_syn_bbr_cpts_7_std.txt Processing pathway 9 of 42... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr Done in 464.057 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/mcp_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/mcp_avg16_syn_bbr_cpts_7.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/mcp_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/mcp_avg16_syn_bbr_cpts_7_std.txt Processing pathway 10 of 42... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/mcp_avg16_syn_bbr Done in 606.348 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/lh.af_avg16_syn_bbr_cpts_9.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.af_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/lh.af_avg16_syn_bbr_cpts_9_std.txt Processing pathway 11 of 42... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 7 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 7 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 7 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Success after 4 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr Done in 700.293 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/rh.af_avg16_syn_bbr_cpts_9.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.af_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/rh.af_avg16_syn_bbr_cpts_9_std.txt Processing pathway 12 of 42... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 7 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 7 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 7 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 7 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 7 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 7 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 7 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 7 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 7 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 7 INFO: Attempting to perturb control points INFO: Reverting to original control points Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr Done in 726.051 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/lh.ar_avg16_syn_bbr_cpts_4.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ar_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/lh.ar_avg16_syn_bbr_cpts_4_std.txt Processing pathway 13 of 42... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr Done in 137.238 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/rh.ar_avg16_syn_bbr_cpts_4.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ar_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/rh.ar_avg16_syn_bbr_cpts_4_std.txt Processing pathway 14 of 42... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr Done in 146.364 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/lh.atr_avg16_syn_bbr_cpts_4.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.atr_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/lh.atr_avg16_syn_bbr_cpts_4_std.txt Processing pathway 15 of 42... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Success after 1 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr Done in 165.602 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/rh.atr_avg16_syn_bbr_cpts_4.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/rh.atr_avg16_syn_bbr_cpts_4_std.txt Processing pathway 16 of 42... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr Done in 179.961 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/lh.cbd_avg16_syn_bbr_cpts_7.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbd_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/lh.cbd_avg16_syn_bbr_cpts_7_std.txt Processing pathway 17 of 42... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Success after 1 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr Done in 445.683 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/rh.cbd_avg16_syn_bbr_cpts_7.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbd_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/rh.cbd_avg16_syn_bbr_cpts_7_std.txt Processing pathway 18 of 42... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr Done in 413.339 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/lh.cbv_avg16_syn_bbr_cpts_5.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cbv_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/lh.cbv_avg16_syn_bbr_cpts_5_std.txt Processing pathway 19 of 42... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Success after 7 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr Done in 174.54 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/rh.cbv_avg16_syn_bbr_cpts_5.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cbv_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/rh.cbv_avg16_syn_bbr_cpts_5_std.txt Processing pathway 20 of 42... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr Done in 198.932 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/lh.cst_avg16_syn_bbr_cpts_7.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/lh.cst_avg16_syn_bbr_cpts_7_std.txt Processing pathway 21 of 42... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr Done in 565.308 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/rh.cst_avg16_syn_bbr_cpts_7.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/rh.cst_avg16_syn_bbr_cpts_7_std.txt Processing pathway 22 of 42... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr Done in 573.641 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/lh.emc_avg16_syn_bbr_cpts_7.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.emc_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/lh.emc_avg16_syn_bbr_cpts_7_std.txt Processing pathway 23 of 42... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr Done in 396.89 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/rh.emc_avg16_syn_bbr_cpts_7.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.emc_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/rh.emc_avg16_syn_bbr_cpts_7_std.txt Processing pathway 24 of 42... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Success after 2 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr Done in 381.591 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/lh.fat_avg16_syn_bbr_cpts_5.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/lh.fat_avg16_syn_bbr_cpts_5_std.txt Processing pathway 25 of 42... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr Done in 163.344 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/rh.fat_avg16_syn_bbr_cpts_5.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fat_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/rh.fat_avg16_syn_bbr_cpts_5_std.txt Processing pathway 26 of 42... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr Done in 191.136 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/lh.fx_avg16_syn_bbr_cpts_9.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fx_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/lh.fx_avg16_syn_bbr_cpts_9_std.txt Processing pathway 27 of 42... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 7 INFO: Attempting to perturb control points INFO: Success after 1 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr Done in 626.907 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/rh.fx_avg16_syn_bbr_cpts_9.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.fx_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/rh.fx_avg16_syn_bbr_cpts_9_std.txt Processing pathway 28 of 42... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 6 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 6 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Success after 3 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr Done in 625.933 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/lh.ilf_avg16_syn_bbr_cpts_8.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.ilf_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/lh.ilf_avg16_syn_bbr_cpts_8_std.txt Processing pathway 29 of 42... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr Done in 423.085 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/rh.ilf_avg16_syn_bbr_cpts_8.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.ilf_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/rh.ilf_avg16_syn_bbr_cpts_8_std.txt Processing pathway 30 of 42... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Success after 5 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr Done in 378.488 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/lh.mlf_avg16_syn_bbr_cpts_7.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.mlf_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/lh.mlf_avg16_syn_bbr_cpts_7_std.txt Processing pathway 31 of 42... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 1 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 1 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 1 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 1 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 1 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 1 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 1 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 1 INFO: Attempting to perturb control points INFO: Success after 8 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr Done in 336.373 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/rh.mlf_avg16_syn_bbr_cpts_7.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.mlf_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/rh.mlf_avg16_syn_bbr_cpts_7_std.txt Processing pathway 32 of 42... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr Done in 314.733 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.or_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/lh.or_avg16_syn_bbr_cpts_5.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.or_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/lh.or_avg16_syn_bbr_cpts_5_std.txt Processing pathway 33 of 42... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.or_avg16_syn_bbr Done in 266.064 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.or_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/rh.or_avg16_syn_bbr_cpts_5.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.or_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/rh.or_avg16_syn_bbr_cpts_5_std.txt Processing pathway 34 of 42... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.or_avg16_syn_bbr Done in 265.576 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/lh.slf1_avg16_syn_bbr_cpts_7.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf1_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/lh.slf1_avg16_syn_bbr_cpts_7_std.txt Processing pathway 35 of 42... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr Done in 478.268 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/rh.slf1_avg16_syn_bbr_cpts_7.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf1_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/rh.slf1_avg16_syn_bbr_cpts_7_std.txt Processing pathway 36 of 42... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 1 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 1 INFO: Attempting to perturb control points INFO: Success after 2 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr Done in 461.347 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/lh.slf2_avg16_syn_bbr_cpts_8.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf2_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/lh.slf2_avg16_syn_bbr_cpts_8_std.txt Processing pathway 37 of 42... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Success after 2 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr Done in 636.283 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/rh.slf2_avg16_syn_bbr_cpts_8.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf2_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/rh.slf2_avg16_syn_bbr_cpts_8_std.txt Processing pathway 38 of 42... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 7 INFO: Attempting to perturb control points INFO: Success after 1 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr Done in 603.035 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/lh.slf3_avg16_syn_bbr_cpts_6.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.slf3_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/lh.slf3_avg16_syn_bbr_cpts_6_std.txt Processing pathway 39 of 42... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr Done in 331.958 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/rh.slf3_avg16_syn_bbr_cpts_6.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.slf3_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/rh.slf3_avg16_syn_bbr_cpts_6_std.txt Processing pathway 40 of 42... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Success after 2 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr Done in 389.021 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/lh.uf_avg16_syn_bbr_cpts_7.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.uf_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/lh.uf_avg16_syn_bbr_cpts_7_std.txt Processing pathway 41 of 42... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Success after 1 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr Done in 356.899 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/rh.uf_avg16_syn_bbr_cpts_7.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.uf_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/rh.uf_avg16_syn_bbr_cpts_7_std.txt Processing pathway 42 of 42... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 4 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 5 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 5 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 5 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 5 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 5 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 5 INFO: Attempting to perturb control points INFO: Success after 7 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr Done in 365.657 sec. dmri_paths done fslmaths /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr/path.pd.nii.gz -thr 51.2000000 /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/path.pd.nii.gz -thr 24.2000000 /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/path.pd.nii.gz -thr 25.2000000 /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/path.pd.nii.gz -thr 41.0000000 /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/path.pd.nii.gz -thr 18.6000000 /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/tmp.nii.gz rm -rf 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/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/path.pd.nii.gz -thr 42.0000000 /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/mcp_avg16_syn_bbr/path.pd.nii.gz -thr 40.6000000 /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/mcp_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/mcp_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/path.pd.nii.gz -thr 69.0000000 /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/path.pd.nii.gz -thr 71.4000000 /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/path.pd.nii.gz -thr 87.4000000 /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/tmp.nii.gz rm -rf 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/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/path.pd.nii.gz -thr 64.8000000 /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/path.pd.nii.gz -thr 60.2000000 /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/tmp.nii.gz fslmaths 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/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/path.pd.nii.gz -thr 50.8000000 /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/path.pd.nii.gz -thr 47.8000000 /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/path.pd.nii.gz -thr 71.6000000 /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/path.pd.nii.gz -thr 61.0000000 /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/path.pd.nii.gz -thr 57.8000000 /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/tmp.nii.gz /usr/local/freesurfer/7.3.2//bin/dmri_trk2trk --in /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/acomm.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/cc.bodyc.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/cc.bodyp.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/cc.bodypf.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/cc.bodypm.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/cc.bodyt.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/cc.genu.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/cc.rostrum.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/cc.splenium.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/mcp.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.af.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.af.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.ar.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.ar.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.atr.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.atr.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.cbd.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.cbd.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.cbv.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.cbv.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.cst.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.cst.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.emc.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.emc.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.fat.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.fat.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.fx.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.fx.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.ilf.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.ilf.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.mlf.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.mlf.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.or.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.or.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.slf1.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.slf1.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.slf2.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.slf2.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.slf3.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.slf3.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.uf.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.uf.mean.trk --inref /usr/local/freesurfer/7.3.2//trctrain/hcp/MGH35_HCP_FA_template.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2syn.lta --regnl /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/syn_warp.m3z --inv --smooth --outasc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/mcp_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/path.ref.txt --outref /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/dtifit_FA.nii.gz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_trk2trk --in /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/acomm.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/cc.bodyc.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/cc.bodyp.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/cc.bodypf.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/cc.bodypm.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/cc.bodyt.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/cc.genu.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/cc.rostrum.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/cc.splenium.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/mcp.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.af.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.af.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.ar.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.ar.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.atr.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.atr.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.cbd.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.cbd.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.cbv.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.cbv.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.cst.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.cst.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.emc.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.emc.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.fat.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.fat.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.fx.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.fx.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.ilf.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.ilf.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.mlf.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.mlf.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.or.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.or.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.slf1.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.slf1.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.slf2.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.slf2.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.slf3.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.slf3.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.uf.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.uf.mean.trk --inref /usr/local/freesurfer/7.3.2//trctrain/hcp/MGH35_HCP_FA_template.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2syn.lta --regnl /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/syn_warp.m3z --inv --smooth --outasc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/mcp_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/path.ref.txt --outref /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/dtifit_FA.nii.gz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input .trk files: /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/acomm.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/cc.bodyc.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/cc.bodyp.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/cc.bodypf.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/cc.bodypm.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/cc.bodyt.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/cc.genu.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/cc.rostrum.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/cc.splenium.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/mcp.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.af.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.af.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.ar.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.ar.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.atr.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.atr.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.cbd.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.cbd.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.cbv.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.cbv.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.cst.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.cst.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.emc.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.emc.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.fat.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.fat.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.fx.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.fx.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.ilf.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.ilf.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.mlf.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.mlf.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.or.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.or.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.slf1.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.slf1.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.slf2.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.slf2.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.slf3.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.slf3.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.uf.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.uf.mean.trk Output text files: /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/mcp_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/path.ref.txt Input reference: /autofs/vast/freesurfer/centos7_x86_64/7.3.2/trctrain/hcp/MGH35_HCP_FA_template.nii.gz Output reference: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dmri/dtifit_FA.nii.gz Affine registration: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dmri/xfms/diff2syn.lta Nonlinear registration: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dmri/xfms/syn_warp.m3z Invert registration: 1 Fill gaps between points: 0 Smoothing streamlines Loading affine registration from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dmri/xfms/diff2syn.lta LTA registration format detected FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -3.375, ref det = -3.375 Loading non-linear registration from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dmri/xfms/syn_warp.m3z setting orig areas to linear transform determinant scaled 1.00 Reading morph inverse Reading /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dmri/xfms/syn_warp.m3z.inv.x.mgz Reading /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dmri/xfms/syn_warp.m3z.inv.y.mgz Reading /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dmri/xfms/syn_warp.m3z.inv.z.mgz Processing input file 1 of 42... Done in 0.008 sec. Processing input file 2 of 42... Done in 0.007 sec. Processing input file 3 of 42... Done in 0.007 sec. Processing input file 4 of 42... Done in 0.007 sec. Processing input file 5 of 42... Done in 0.009 sec. Processing input file 6 of 42... Done in 0.009 sec. Processing input file 7 of 42... Done in 0.007 sec. Processing input file 8 of 42... Done in 0.008 sec. Processing input file 9 of 42... Done in 0.007 sec. Processing input file 10 of 42... Done in 0.007 sec. Processing input file 11 of 42... Done in 0.008 sec. Processing input file 12 of 42... Done in 0.007 sec. Processing input file 13 of 42... Done in 0.007 sec. Processing input file 14 of 42... Done in 0.007 sec. Processing input file 15 of 42... Done in 0.007 sec. Processing input file 16 of 42... Done in 0.007 sec. Processing input file 17 of 42... Done in 0.007 sec. Processing input file 18 of 42... Done in 0.007 sec. Processing input file 19 of 42... Done in 0.007 sec. Processing input file 20 of 42... 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Processing input file 39 of 42... Done in 0.007 sec. Processing input file 40 of 42... Done in 0.007 sec. Processing input file 41 of 42... Done in 0.008 sec. Processing input file 42 of 42... Done in 0.007 sec. dmri_trk2trk done /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/dtifit --path acomm --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/dtifit --path acomm --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dmri/dtifit Pathway name: acomm Subject name: sub-BANDA002 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr... Done in 0.52 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 39098 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt1.surf.mgz Dim: 128775 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt1.surf.mgz Fri Jul 14 17:06:36 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr/tmp.8uWUVM/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr/tmp.8uWUVM/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr/tmp.8uWUVM/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr/tmp.8uWUVM/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr/tmp.8uWUVM/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr/tmp.8uWUVM/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr/tmp.8uWUVM/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr/tmp.8uWUVM/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr/tmp.8uWUVM/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 1782 values in range Counting number of voxels in first frame Found 1781 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 1781 1781.000000 128775 1.383032 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA002 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: 33.24 13.46 -14.68 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Found 1782 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA002 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 1782 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1782 nlabel points Performing mapping from target back to the source label 128775 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt1.surf.label 3505 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt1.surf.stats sub-BANDA002 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white... Using TH3 vertex volume calc Total face volume 270308 Total vertex volume 266908 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt1.surf.label" number of vertices = 2300 total surface area = 1611 mm^2 total gray matter volume = 8612 mm^3 average cortical thickness = 3.757 mm +- 0.802 mm average integrated rectified mean curvature = 0.152 average integrated rectified Gaussian curvature = 0.038 folding index = 51 intrinsic curvature index = 3.4 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 38988 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt2.surf.mgz Dim: 129240 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt2.surf.mgz Fri Jul 14 17:06:46 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr/tmp.vlOCwq/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr/tmp.vlOCwq/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr/tmp.vlOCwq/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr/tmp.vlOCwq/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr/tmp.vlOCwq/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr/tmp.vlOCwq/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr/tmp.vlOCwq/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr/tmp.vlOCwq/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr/tmp.vlOCwq/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 1389 values in range Counting number of voxels in first frame Found 1388 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 1388 1388.000000 129240 1.073971 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA002 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: -32.18 9.30 -18.80 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Found 1389 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA002 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 1389 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1389 nlabel points Performing mapping from target back to the source label 129240 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt2.surf.label 3107 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt2.surf.stats sub-BANDA002 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white... Using TH3 vertex volume calc Total face volume 278288 Total vertex volume 274927 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/acomm_avg16_syn_bbr/endpt2.surf.label" number of vertices = 1916 total surface area = 1351 mm^2 total gray matter volume = 7162 mm^3 average cortical thickness = 3.713 mm +- 0.749 mm average integrated rectified mean curvature = 0.155 average integrated rectified Gaussian curvature = 0.048 folding index = 39 intrinsic curvature index = 4.0 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/dtifit --path cc.bodyc --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/dtifit --path cc.bodyc --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dmri/dtifit Pathway name: cc.bodyc Subject name: sub-BANDA002 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr... Done in 0.467 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 39098 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.mgz Dim: 128775 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.mgz Fri Jul 14 17:06:56 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/tmp.9xtIoi/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/tmp.9xtIoi/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/tmp.9xtIoi/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/tmp.9xtIoi/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/tmp.9xtIoi/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/tmp.9xtIoi/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/tmp.9xtIoi/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/tmp.9xtIoi/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/tmp.9xtIoi/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 3183 values in range Counting number of voxels in first frame Found 3182 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 3182 3182.000000 128775 2.470977 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA002 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: 18.06 -27.44 49.99 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Found 3183 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA002 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 3183 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3183 nlabel points Performing mapping from target back to the source label 128775 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.label 14732 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.stats sub-BANDA002 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white... Using TH3 vertex volume calc Total face volume 270308 Total vertex volume 266908 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.label" number of vertices = 8964 total surface area = 5905 mm^2 total gray matter volume = 17339 mm^3 average cortical thickness = 2.688 mm +- 0.626 mm average integrated rectified mean curvature = 0.106 average integrated rectified Gaussian curvature = 0.020 folding index = 79 intrinsic curvature index = 7.2 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 38988 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.mgz Dim: 129240 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.mgz Fri Jul 14 17:07:06 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/tmp.9mdUn0/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/tmp.9mdUn0/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/tmp.9mdUn0/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/tmp.9mdUn0/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/tmp.9mdUn0/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/tmp.9mdUn0/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/tmp.9mdUn0/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/tmp.9mdUn0/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/tmp.9mdUn0/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 3004 values in range Counting number of voxels in first frame Found 3003 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 3003 3003.000000 129240 2.323584 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA002 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: -24.51 -30.12 46.63 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Found 3004 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA002 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 3004 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3004 nlabel points Performing mapping from target back to the source label 129240 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.label 14014 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.stats sub-BANDA002 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white... Using TH3 vertex volume calc Total face volume 278288 Total vertex volume 274927 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.label" number of vertices = 8288 total surface area = 5300 mm^2 total gray matter volume = 15621 mm^3 average cortical thickness = 2.725 mm +- 0.604 mm average integrated rectified mean curvature = 0.101 average integrated rectified Gaussian curvature = 0.018 folding index = 69 intrinsic curvature index = 5.8 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/dtifit --path cc.bodyp --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/dtifit --path cc.bodyp --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dmri/dtifit Pathway name: cc.bodyp Subject name: sub-BANDA002 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr... Done in 0.444 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 39098 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.mgz Dim: 128775 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.mgz Fri Jul 14 17:07:18 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/tmp.jhm6Un/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/tmp.jhm6Un/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/tmp.jhm6Un/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/tmp.jhm6Un/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/tmp.jhm6Un/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/tmp.jhm6Un/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/tmp.jhm6Un/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/tmp.jhm6Un/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/tmp.jhm6Un/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 3865 values in range Counting number of voxels in first frame Found 3864 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 3864 3864.000000 128775 3.000582 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA002 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: 17.62 -56.40 39.14 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Found 3865 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA002 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 3865 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3865 nlabel points Performing mapping from target back to the source label 128775 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.label 20568 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.stats sub-BANDA002 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white... Using TH3 vertex volume calc Total face volume 270308 Total vertex volume 266908 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.label" number of vertices = 12388 total surface area = 8238 mm^2 total gray matter volume = 23353 mm^3 average cortical thickness = 2.555 mm +- 0.563 mm average integrated rectified mean curvature = 0.125 average integrated rectified Gaussian curvature = 0.025 folding index = 160 intrinsic curvature index = 12.8 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 38988 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.mgz Dim: 129240 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.mgz Fri Jul 14 17:07:29 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/tmp.W29b4H/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/tmp.W29b4H/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/tmp.W29b4H/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/tmp.W29b4H/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/tmp.W29b4H/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/tmp.W29b4H/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/tmp.W29b4H/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/tmp.W29b4H/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/tmp.W29b4H/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 3570 values in range Counting number of voxels in first frame Found 3569 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 3569 3569.000000 129240 2.761529 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA002 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: -21.03 -56.15 37.04 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Found 3570 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA002 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 3570 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3570 nlabel points Performing mapping from target back to the source label 129240 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.label 20936 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.stats sub-BANDA002 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white... Using TH3 vertex volume calc Total face volume 278288 Total vertex volume 274927 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.label" number of vertices = 11649 total surface area = 7797 mm^2 total gray matter volume = 22655 mm^3 average cortical thickness = 2.633 mm +- 0.570 mm average integrated rectified mean curvature = 0.125 average integrated rectified Gaussian curvature = 0.025 folding index = 152 intrinsic curvature index = 12.2 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/dtifit --path cc.bodypf --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/dtifit --path cc.bodypf --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dmri/dtifit Pathway name: cc.bodypf Subject name: sub-BANDA002 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr... Done in 0.487 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 39098 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.mgz Dim: 128775 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.mgz Fri Jul 14 17:07:40 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/tmp.S4oumG/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/tmp.S4oumG/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/tmp.S4oumG/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/tmp.S4oumG/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/tmp.S4oumG/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/tmp.S4oumG/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/tmp.S4oumG/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/tmp.S4oumG/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/tmp.S4oumG/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2671 values in range Counting number of voxels in first frame Found 2670 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 2670 2670.000000 128775 2.073384 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA002 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: 11.26 22.46 45.86 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Found 2671 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA002 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2671 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2671 nlabel points Performing mapping from target back to the source label 128775 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.label 12862 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.stats sub-BANDA002 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white... Using TH3 vertex volume calc Total face volume 270308 Total vertex volume 266908 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.label" number of vertices = 8227 total surface area = 5548 mm^2 total gray matter volume = 18703 mm^3 average cortical thickness = 2.917 mm +- 0.619 mm average integrated rectified mean curvature = 0.128 average integrated rectified Gaussian curvature = 0.030 folding index = 112 intrinsic curvature index = 10.6 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 38988 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.mgz Dim: 129240 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.mgz Fri Jul 14 17:07:50 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/tmp.bTmnbR/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/tmp.bTmnbR/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/tmp.bTmnbR/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/tmp.bTmnbR/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/tmp.bTmnbR/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/tmp.bTmnbR/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/tmp.bTmnbR/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/tmp.bTmnbR/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/tmp.bTmnbR/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2394 values in range Counting number of voxels in first frame Found 2393 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 2393 2393.000000 129240 1.851594 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA002 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: -21.86 21.65 42.84 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Found 2394 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA002 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2394 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2394 nlabel points Performing mapping from target back to the source label 129240 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.label 13366 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.stats sub-BANDA002 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white... Using TH3 vertex volume calc Total face volume 278288 Total vertex volume 274927 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.label" number of vertices = 8421 total surface area = 5595 mm^2 total gray matter volume = 20850 mm^3 average cortical thickness = 3.131 mm +- 0.667 mm average integrated rectified mean curvature = 0.127 average integrated rectified Gaussian curvature = 0.028 folding index = 112 intrinsic curvature index = 9.8 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/dtifit --path cc.bodypm --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/dtifit --path cc.bodypm --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dmri/dtifit Pathway name: cc.bodypm Subject name: sub-BANDA002 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr... Done in 0.497 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 39098 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.mgz Dim: 128775 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.mgz Fri Jul 14 17:08:00 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/tmp.CPxkFB/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/tmp.CPxkFB/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/tmp.CPxkFB/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/tmp.CPxkFB/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/tmp.CPxkFB/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/tmp.CPxkFB/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/tmp.CPxkFB/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/tmp.CPxkFB/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/tmp.CPxkFB/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2675 values in range Counting number of voxels in first frame Found 2674 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 2674 2674.000000 128775 2.076490 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA002 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: 11.82 -2.52 53.69 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Found 2675 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA002 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2675 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2675 nlabel points Performing mapping from target back to the source label 128775 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.label 11432 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.stats sub-BANDA002 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white... Using TH3 vertex volume calc Total face volume 270308 Total vertex volume 266908 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.label" number of vertices = 7122 total surface area = 4919 mm^2 total gray matter volume = 18002 mm^3 average cortical thickness = 3.124 mm +- 0.604 mm average integrated rectified mean curvature = 0.123 average integrated rectified Gaussian curvature = 0.022 folding index = 82 intrinsic curvature index = 6.8 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 38988 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.mgz Dim: 129240 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.mgz Fri Jul 14 17:08:11 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/tmp.9jdfMG/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/tmp.9jdfMG/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/tmp.9jdfMG/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/tmp.9jdfMG/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/tmp.9jdfMG/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/tmp.9jdfMG/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/tmp.9jdfMG/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/tmp.9jdfMG/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/tmp.9jdfMG/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2908 values in range Counting number of voxels in first frame Found 2907 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 2907 2907.000000 129240 2.249304 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA002 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: -18.92 -6.23 53.72 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Found 2908 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA002 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2908 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2908 nlabel points Performing mapping from target back to the source label 129240 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.label 10325 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.stats sub-BANDA002 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white... Using TH3 vertex volume calc Total face volume 278288 Total vertex volume 274927 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.label" number of vertices = 6876 total surface area = 4638 mm^2 total gray matter volume = 17852 mm^3 average cortical thickness = 3.225 mm +- 0.604 mm average integrated rectified mean curvature = 0.119 average integrated rectified Gaussian curvature = 0.024 folding index = 78 intrinsic curvature index = 6.4 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/dtifit --path cc.bodyt --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/dtifit --path cc.bodyt --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dmri/dtifit Pathway name: cc.bodyt Subject name: sub-BANDA002 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr... Done in 0.685 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 39098 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.mgz Dim: 128775 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.mgz Fri Jul 14 17:08:22 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/tmp.meCC4o/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/tmp.meCC4o/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/tmp.meCC4o/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/tmp.meCC4o/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/tmp.meCC4o/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/tmp.meCC4o/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/tmp.meCC4o/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/tmp.meCC4o/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/tmp.meCC4o/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2357 values in range Counting number of voxels in first frame Found 2356 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 2356 2356.000000 128775 1.829548 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA002 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: 49.81 -16.12 9.35 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Found 2357 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA002 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2357 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2357 nlabel points Performing mapping from target back to the source label 128775 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.label 10771 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.stats sub-BANDA002 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white... Using TH3 vertex volume calc Total face volume 270308 Total vertex volume 266908 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.label" number of vertices = 5813 total surface area = 3825 mm^2 total gray matter volume = 14123 mm^3 average cortical thickness = 3.047 mm +- 0.649 mm average integrated rectified mean curvature = 0.115 average integrated rectified Gaussian curvature = 0.023 folding index = 73 intrinsic curvature index = 5.2 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 38988 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.mgz Dim: 129240 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.mgz Fri Jul 14 17:08:32 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/tmp.OYOlfb/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/tmp.OYOlfb/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/tmp.OYOlfb/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/tmp.OYOlfb/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/tmp.OYOlfb/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/tmp.OYOlfb/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/tmp.OYOlfb/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/tmp.OYOlfb/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/tmp.OYOlfb/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2720 values in range Counting number of voxels in first frame Found 2719 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 2719 2719.000000 129240 2.103838 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA002 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: -46.38 -30.29 -2.97 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Found 2720 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA002 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2720 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2720 nlabel points Performing mapping from target back to the source label 129240 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.label 12647 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.stats sub-BANDA002 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white... Using TH3 vertex volume calc Total face volume 278288 Total vertex volume 274927 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.label" number of vertices = 7453 total surface area = 4856 mm^2 total gray matter volume = 16576 mm^3 average cortical thickness = 3.026 mm +- 0.691 mm average integrated rectified mean curvature = 0.117 average integrated rectified Gaussian curvature = 0.022 folding index = 94 intrinsic curvature index = 6.7 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/dtifit --path cc.genu --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/dtifit --path cc.genu --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dmri/dtifit Pathway name: cc.genu Subject name: sub-BANDA002 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr... Done in 0.462 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 39098 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.mgz Dim: 128775 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.mgz Fri Jul 14 17:08:43 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/tmp.ctcHey/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/tmp.ctcHey/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/tmp.ctcHey/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/tmp.ctcHey/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/tmp.ctcHey/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/tmp.ctcHey/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/tmp.ctcHey/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/tmp.ctcHey/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/tmp.ctcHey/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2582 values in range Counting number of voxels in first frame Found 2581 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 2581 2581.000000 128775 2.004271 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA002 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: 17.43 42.22 31.63 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Found 2582 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA002 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2582 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2582 nlabel points Performing mapping from target back to the source label 128775 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.label 12264 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.stats sub-BANDA002 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white... Using TH3 vertex volume calc Total face volume 270308 Total vertex volume 266908 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.label" number of vertices = 7434 total surface area = 5049 mm^2 total gray matter volume = 17229 mm^3 average cortical thickness = 2.863 mm +- 0.653 mm average integrated rectified mean curvature = 0.142 average integrated rectified Gaussian curvature = 0.036 folding index = 131 intrinsic curvature index = 11.5 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 38988 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.mgz Dim: 129240 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.mgz Fri Jul 14 17:08:53 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/tmp.AIBbqM/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/tmp.AIBbqM/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/tmp.AIBbqM/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/tmp.AIBbqM/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/tmp.AIBbqM/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/tmp.AIBbqM/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/tmp.AIBbqM/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/tmp.AIBbqM/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/tmp.AIBbqM/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2642 values in range Counting number of voxels in first frame Found 2641 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 2641 2641.000000 129240 2.043485 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA002 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: -24.57 38.51 28.94 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Found 2642 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA002 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2642 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2642 nlabel points Performing mapping from target back to the source label 129240 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.label 12664 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.stats sub-BANDA002 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white... Using TH3 vertex volume calc Total face volume 278288 Total vertex volume 274927 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.label" number of vertices = 8321 total surface area = 5593 mm^2 total gray matter volume = 19252 mm^3 average cortical thickness = 2.963 mm +- 0.665 mm average integrated rectified mean curvature = 0.139 average integrated rectified Gaussian curvature = 0.035 folding index = 137 intrinsic curvature index = 12.0 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/dtifit --path cc.rostrum --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/dtifit --path cc.rostrum --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dmri/dtifit Pathway name: cc.rostrum Subject name: sub-BANDA002 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr... Done in 0.552 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 39098 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.mgz Dim: 128775 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.mgz Fri Jul 14 17:09:04 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/tmp.UtvjcM/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/tmp.UtvjcM/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/tmp.UtvjcM/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/tmp.UtvjcM/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/tmp.UtvjcM/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/tmp.UtvjcM/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/tmp.UtvjcM/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/tmp.UtvjcM/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/tmp.UtvjcM/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 1950 values in range Counting number of voxels in first frame Found 1949 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 1949 1949.000000 128775 1.513493 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA002 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: 8.25 47.59 20.25 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Found 1950 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA002 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 1950 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1950 nlabel points Performing mapping from target back to the source label 128775 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.label 6048 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.stats sub-BANDA002 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white... Using TH3 vertex volume calc Total face volume 270308 Total vertex volume 266908 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.label" number of vertices = 3953 total surface area = 2674 mm^2 total gray matter volume = 9528 mm^3 average cortical thickness = 2.998 mm +- 0.708 mm average integrated rectified mean curvature = 0.150 average integrated rectified Gaussian curvature = 0.038 folding index = 82 intrinsic curvature index = 6.2 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 38988 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.mgz Dim: 129240 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.mgz Fri Jul 14 17:09:14 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/tmp.2B3qHm/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/tmp.2B3qHm/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/tmp.2B3qHm/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/tmp.2B3qHm/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/tmp.2B3qHm/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/tmp.2B3qHm/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/tmp.2B3qHm/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/tmp.2B3qHm/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/tmp.2B3qHm/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2178 values in range Counting number of voxels in first frame Found 2177 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 2177 2177.000000 129240 1.684463 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA002 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: -15.16 46.90 15.26 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Found 2178 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA002 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2178 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2178 nlabel points Performing mapping from target back to the source label 129240 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.label 6351 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.stats sub-BANDA002 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white... Using TH3 vertex volume calc Total face volume 278288 Total vertex volume 274927 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.label" number of vertices = 4378 total surface area = 2991 mm^2 total gray matter volume = 10969 mm^3 average cortical thickness = 2.897 mm +- 0.678 mm average integrated rectified mean curvature = 0.149 average integrated rectified Gaussian curvature = 0.037 folding index = 83 intrinsic curvature index = 6.5 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/dtifit --path cc.splenium --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/dtifit --path cc.splenium --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dmri/dtifit Pathway name: cc.splenium Subject name: sub-BANDA002 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr... Done in 0.498 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 39098 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.mgz Dim: 128775 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.mgz Fri Jul 14 17:09:24 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/tmp.DaqegE/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/tmp.DaqegE/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/tmp.DaqegE/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/tmp.DaqegE/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/tmp.DaqegE/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/tmp.DaqegE/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/tmp.DaqegE/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/tmp.DaqegE/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/tmp.DaqegE/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 3642 values in range Counting number of voxels in first frame Found 3641 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 3641 3641.000000 128775 2.827412 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA002 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: 23.63 -77.63 13.16 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Found 3642 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA002 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 3642 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3642 nlabel points Performing mapping from target back to the source label 128775 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.label 15120 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.stats sub-BANDA002 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white... Using TH3 vertex volume calc Total face volume 270308 Total vertex volume 266908 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.label" number of vertices = 9803 total surface area = 6281 mm^2 total gray matter volume = 16193 mm^3 average cortical thickness = 2.418 mm +- 0.558 mm average integrated rectified mean curvature = 0.125 average integrated rectified Gaussian curvature = 0.026 folding index = 122 intrinsic curvature index = 10.3 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 38988 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.mgz Dim: 129240 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.mgz Fri Jul 14 17:09:34 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/tmp.vaYHfF/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/tmp.vaYHfF/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/tmp.vaYHfF/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/tmp.vaYHfF/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/tmp.vaYHfF/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/tmp.vaYHfF/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/tmp.vaYHfF/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/tmp.vaYHfF/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/tmp.vaYHfF/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2780 values in range Counting number of voxels in first frame Found 2779 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 2779 2779.000000 129240 2.150263 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA002 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: -18.38 -78.51 13.72 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Found 2780 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA002 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2780 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2780 nlabel points Performing mapping from target back to the source label 129240 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.label 13107 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.stats sub-BANDA002 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white... Using TH3 vertex volume calc Total face volume 278288 Total vertex volume 274927 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.label" number of vertices = 7620 total surface area = 5045 mm^2 total gray matter volume = 14989 mm^3 average cortical thickness = 2.650 mm +- 0.536 mm average integrated rectified mean curvature = 0.124 average integrated rectified Gaussian curvature = 0.023 folding index = 96 intrinsic curvature index = 7.2 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/mcp_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/dtifit --path mcp --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/mcp_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/mcp_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/mcp_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/dtifit --path mcp --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/mcp_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/mcp_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/mcp_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dmri/dtifit Pathway name: mcp Subject name: sub-BANDA002 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/mcp_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/mcp_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/mcp_avg16_syn_bbr... Done in 0.495 sec. dmri_pathstats done /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/dtifit --path lh.af --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/dtifit --path lh.af --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dmri/dtifit Pathway name: lh.af Subject name: sub-BANDA002 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr... Done in 0.557 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 38988 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt1.surf.mgz Dim: 129240 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt1.surf.mgz Fri Jul 14 17:09:46 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/tmp.Uh1KMG/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/tmp.Uh1KMG/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/tmp.Uh1KMG/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/tmp.Uh1KMG/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/tmp.Uh1KMG/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/tmp.Uh1KMG/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/tmp.Uh1KMG/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/tmp.Uh1KMG/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/tmp.Uh1KMG/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 3340 values in range Counting number of voxels in first frame Found 3339 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 3339 3339.000000 129240 2.583565 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA002 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: -35.35 17.52 28.88 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Found 3340 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA002 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 3340 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3340 nlabel points Performing mapping from target back to the source label 129240 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt1.surf.label 16689 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt1.surf.stats sub-BANDA002 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white... Using TH3 vertex volume calc Total face volume 278288 Total vertex volume 274927 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt1.surf.label" number of vertices = 10004 total surface area = 6611 mm^2 total gray matter volume = 21444 mm^3 average cortical thickness = 2.911 mm +- 0.572 mm average integrated rectified mean curvature = 0.123 average integrated rectified Gaussian curvature = 0.025 folding index = 119 intrinsic curvature index = 10.6 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 38988 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt2.surf.mgz Dim: 129240 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt2.surf.mgz Fri Jul 14 17:09:55 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/tmp.RJ7ptt/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/tmp.RJ7ptt/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/tmp.RJ7ptt/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/tmp.RJ7ptt/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/tmp.RJ7ptt/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/tmp.RJ7ptt/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/tmp.RJ7ptt/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/tmp.RJ7ptt/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/tmp.RJ7ptt/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 3616 values in range Counting number of voxels in first frame Found 3615 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 3615 3615.000000 129240 2.797122 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA002 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: -40.18 -44.41 -6.03 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Found 3616 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA002 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 3616 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3616 nlabel points Performing mapping from target back to the source label 129240 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt2.surf.label 15750 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt2.surf.stats sub-BANDA002 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white... Using TH3 vertex volume calc Total face volume 278288 Total vertex volume 274927 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.af_avg16_syn_bbr/endpt2.surf.label" number of vertices = 8891 total surface area = 6118 mm^2 total gray matter volume = 19101 mm^3 average cortical thickness = 2.983 mm +- 0.727 mm average integrated rectified mean curvature = 0.127 average integrated rectified Gaussian curvature = 0.026 folding index = 116 intrinsic curvature index = 9.7 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/dtifit --path rh.af --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/dtifit --path rh.af --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dmri/dtifit Pathway name: rh.af Subject name: sub-BANDA002 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr... Done in 0.454 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 39098 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt1.surf.mgz Dim: 128775 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt1.surf.mgz Fri Jul 14 17:10:06 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/tmp.igdHOT/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/tmp.igdHOT/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/tmp.igdHOT/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/tmp.igdHOT/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/tmp.igdHOT/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/tmp.igdHOT/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/tmp.igdHOT/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/tmp.igdHOT/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/tmp.igdHOT/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 4004 values in range Counting number of voxels in first frame Found 4003 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 4003 4003.000000 128775 3.108523 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA002 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: 28.94 21.90 34.17 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Found 4004 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA002 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 4004 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4004 nlabel points Performing mapping from target back to the source label 128775 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt1.surf.label 15902 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt1.surf.stats sub-BANDA002 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white... Using TH3 vertex volume calc Total face volume 270308 Total vertex volume 266908 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt1.surf.label" number of vertices = 9724 total surface area = 6641 mm^2 total gray matter volume = 19984 mm^3 average cortical thickness = 2.776 mm +- 0.584 mm average integrated rectified mean curvature = 0.128 average integrated rectified Gaussian curvature = 0.028 folding index = 136 intrinsic curvature index = 11.5 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 39098 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt2.surf.mgz Dim: 128775 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt2.surf.mgz Fri Jul 14 17:10:16 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/tmp.rJxXB6/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/tmp.rJxXB6/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/tmp.rJxXB6/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/tmp.rJxXB6/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/tmp.rJxXB6/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/tmp.rJxXB6/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/tmp.rJxXB6/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/tmp.rJxXB6/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/tmp.rJxXB6/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 3322 values in range Counting number of voxels in first frame Found 3321 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 3321 3321.000000 128775 2.578917 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA002 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: 44.09 -42.34 7.67 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Found 3322 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA002 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 3322 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3322 nlabel points Performing mapping from target back to the source label 128775 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt2.surf.label 18223 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt2.surf.stats sub-BANDA002 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white... Using TH3 vertex volume calc Total face volume 270308 Total vertex volume 266908 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.af_avg16_syn_bbr/endpt2.surf.label" number of vertices = 9745 total surface area = 6523 mm^2 total gray matter volume = 18384 mm^3 average cortical thickness = 2.811 mm +- 0.645 mm average integrated rectified mean curvature = 0.123 average integrated rectified Gaussian curvature = 0.026 folding index = 116 intrinsic curvature index = 10.2 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/dtifit --path lh.ar --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/dtifit --path lh.ar --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dmri/dtifit Pathway name: lh.ar Subject name: sub-BANDA002 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr... Done in 0.431 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 38988 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.mgz Dim: 129240 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.mgz Fri Jul 14 17:10:26 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/tmp.CwWONx/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/tmp.CwWONx/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/tmp.CwWONx/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/tmp.CwWONx/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/tmp.CwWONx/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/tmp.CwWONx/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/tmp.CwWONx/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/tmp.CwWONx/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/tmp.CwWONx/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 1373 values in range Counting number of voxels in first frame Found 1372 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 1372 1372.000000 129240 1.061591 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA002 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: -46.40 -20.54 4.94 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Found 1373 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA002 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 1373 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1373 nlabel points Performing mapping from target back to the source label 129240 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.label 3594 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.stats sub-BANDA002 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white... Using TH3 vertex volume calc Total face volume 278288 Total vertex volume 274927 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.label" number of vertices = 1958 total surface area = 1237 mm^2 total gray matter volume = 3901 mm^3 average cortical thickness = 2.863 mm +- 0.626 mm average integrated rectified mean curvature = 0.118 average integrated rectified Gaussian curvature = 0.021 folding index = 23 intrinsic curvature index = 1.6 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/dtifit --path rh.ar --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/dtifit --path rh.ar --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dmri/dtifit Pathway name: rh.ar Subject name: sub-BANDA002 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr... Done in 0.554 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 39098 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.mgz Dim: 128775 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.mgz Fri Jul 14 17:10:36 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/tmp.E22ATv/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/tmp.E22ATv/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/tmp.E22ATv/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/tmp.E22ATv/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/tmp.E22ATv/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/tmp.E22ATv/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/tmp.E22ATv/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/tmp.E22ATv/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/tmp.E22ATv/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 1518 values in range Counting number of voxels in first frame Found 1517 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 1517 1517.000000 128775 1.178024 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA002 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: 51.01 -9.58 12.00 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Found 1518 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA002 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 1518 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1518 nlabel points Performing mapping from target back to the source label 128775 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.label 4737 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.stats sub-BANDA002 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white... Using TH3 vertex volume calc Total face volume 270308 Total vertex volume 266908 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.label" number of vertices = 2545 total surface area = 1640 mm^2 total gray matter volume = 6513 mm^3 average cortical thickness = 3.158 mm +- 0.668 mm average integrated rectified mean curvature = 0.119 average integrated rectified Gaussian curvature = 0.026 folding index = 34 intrinsic curvature index = 2.7 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/dtifit --path lh.atr --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/dtifit --path lh.atr --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dmri/dtifit Pathway name: lh.atr Subject name: sub-BANDA002 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr... Done in 0.482 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 38988 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.mgz Dim: 129240 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.mgz Fri Jul 14 17:10:46 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/tmp.p8NzxK/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/tmp.p8NzxK/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/tmp.p8NzxK/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/tmp.p8NzxK/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/tmp.p8NzxK/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/tmp.p8NzxK/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/tmp.p8NzxK/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/tmp.p8NzxK/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/tmp.p8NzxK/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2384 values in range Counting number of voxels in first frame Found 2383 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 2383 2383.000000 129240 1.843856 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA002 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: -21.11 45.31 24.89 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Found 2384 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA002 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2384 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2384 nlabel points Performing mapping from target back to the source label 129240 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.label 10252 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.stats sub-BANDA002 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white... Using TH3 vertex volume calc Total face volume 278288 Total vertex volume 274927 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.label" number of vertices = 6088 total surface area = 4137 mm^2 total gray matter volume = 13749 mm^3 average cortical thickness = 2.880 mm +- 0.630 mm average integrated rectified mean curvature = 0.143 average integrated rectified Gaussian curvature = 0.034 folding index = 97 intrinsic curvature index = 8.6 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/dtifit --path rh.atr --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/dtifit --path rh.atr --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dmri/dtifit Pathway name: rh.atr Subject name: sub-BANDA002 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr... Done in 0.542 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 39098 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.mgz Dim: 128775 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.mgz Fri Jul 14 17:10:57 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/tmp.YTBURx/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/tmp.YTBURx/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/tmp.YTBURx/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/tmp.YTBURx/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/tmp.YTBURx/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/tmp.YTBURx/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/tmp.YTBURx/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/tmp.YTBURx/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/tmp.YTBURx/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2040 values in range Counting number of voxels in first frame Found 2039 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 2039 2039.000000 128775 1.583382 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA002 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: 12.15 42.79 32.37 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Found 2040 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA002 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2040 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2040 nlabel points Performing mapping from target back to the source label 128775 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.label 10556 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.stats sub-BANDA002 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white... Using TH3 vertex volume calc Total face volume 270308 Total vertex volume 266908 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.label" number of vertices = 5488 total surface area = 3689 mm^2 total gray matter volume = 11598 mm^3 average cortical thickness = 2.828 mm +- 0.654 mm average integrated rectified mean curvature = 0.135 average integrated rectified Gaussian curvature = 0.034 folding index = 78 intrinsic curvature index = 7.5 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/dtifit --path lh.cbd --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/dtifit --path lh.cbd --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dmri/dtifit Pathway name: lh.cbd Subject name: sub-BANDA002 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr... Done in 0.477 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 38988 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.mgz Dim: 129240 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.mgz Fri Jul 14 17:11:07 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/tmp.bcd3Hr/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/tmp.bcd3Hr/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/tmp.bcd3Hr/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/tmp.bcd3Hr/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/tmp.bcd3Hr/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/tmp.bcd3Hr/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/tmp.bcd3Hr/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/tmp.bcd3Hr/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/tmp.bcd3Hr/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 1858 values in range Counting number of voxels in first frame Found 1857 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 1857 1857.000000 129240 1.436862 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA002 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: -14.83 21.85 32.78 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Found 1858 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA002 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 1858 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1858 nlabel points Performing mapping from target back to the source label 129240 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.label 11776 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.stats sub-BANDA002 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white... Using TH3 vertex volume calc Total face volume 278288 Total vertex volume 274927 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.label" number of vertices = 5073 total surface area = 3352 mm^2 total gray matter volume = 10228 mm^3 average cortical thickness = 3.015 mm +- 0.631 mm average integrated rectified mean curvature = 0.123 average integrated rectified Gaussian curvature = 0.025 folding index = 57 intrinsic curvature index = 5.5 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 38988 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.mgz Dim: 129240 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.mgz Fri Jul 14 17:11:16 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/tmp.MVUcAG/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/tmp.MVUcAG/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/tmp.MVUcAG/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/tmp.MVUcAG/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/tmp.MVUcAG/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/tmp.MVUcAG/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/tmp.MVUcAG/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/tmp.MVUcAG/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/tmp.MVUcAG/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2213 values in range Counting number of voxels in first frame Found 2212 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 2212 2212.000000 129240 1.711544 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA002 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: -10.64 -56.47 19.74 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Found 2213 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA002 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2213 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2213 nlabel points Performing mapping from target back to the source label 129240 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.label 9867 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.stats sub-BANDA002 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white... Using TH3 vertex volume calc Total face volume 278288 Total vertex volume 274927 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.label" number of vertices = 4775 total surface area = 3225 mm^2 total gray matter volume = 9085 mm^3 average cortical thickness = 2.784 mm +- 0.631 mm average integrated rectified mean curvature = 0.139 average integrated rectified Gaussian curvature = 0.030 folding index = 67 intrinsic curvature index = 6.1 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/dtifit --path rh.cbd --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/dtifit --path rh.cbd --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dmri/dtifit Pathway name: rh.cbd Subject name: sub-BANDA002 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr... Done in 0.498 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 39098 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.mgz Dim: 128775 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.mgz Fri Jul 14 17:11:26 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/tmp.hZnPuH/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/tmp.hZnPuH/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/tmp.hZnPuH/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/tmp.hZnPuH/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/tmp.hZnPuH/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/tmp.hZnPuH/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/tmp.hZnPuH/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/tmp.hZnPuH/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/tmp.hZnPuH/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2119 values in range Counting number of voxels in first frame Found 2118 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 2118 2118.000000 128775 1.644729 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA002 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: 6.04 17.19 40.13 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Found 2119 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA002 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2119 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2119 nlabel points Performing mapping from target back to the source label 128775 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.label 10249 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.stats sub-BANDA002 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white... Using TH3 vertex volume calc Total face volume 270308 Total vertex volume 266908 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.label" number of vertices = 5409 total surface area = 3636 mm^2 total gray matter volume = 12327 mm^3 average cortical thickness = 3.023 mm +- 0.677 mm average integrated rectified mean curvature = 0.127 average integrated rectified Gaussian curvature = 0.027 folding index = 72 intrinsic curvature index = 5.8 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 39098 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.mgz Dim: 128775 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.mgz Fri Jul 14 17:11:37 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/tmp.7a4AoF/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/tmp.7a4AoF/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/tmp.7a4AoF/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/tmp.7a4AoF/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/tmp.7a4AoF/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/tmp.7a4AoF/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/tmp.7a4AoF/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/tmp.7a4AoF/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/tmp.7a4AoF/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2135 values in range Counting number of voxels in first frame Found 2134 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 2134 2134.000000 128775 1.657154 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA002 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: 11.07 -53.45 22.61 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Found 2135 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA002 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2135 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2135 nlabel points Performing mapping from target back to the source label 128775 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.label 8181 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.stats sub-BANDA002 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white... Using TH3 vertex volume calc Total face volume 270308 Total vertex volume 266908 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.label" number of vertices = 4168 total surface area = 2749 mm^2 total gray matter volume = 7896 mm^3 average cortical thickness = 2.661 mm +- 0.697 mm average integrated rectified mean curvature = 0.129 average integrated rectified Gaussian curvature = 0.030 folding index = 53 intrinsic curvature index = 5.2 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/dtifit --path lh.cbv --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/dtifit --path lh.cbv --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dmri/dtifit Pathway name: lh.cbv Subject name: sub-BANDA002 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr... Done in 0.609 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 38988 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.mgz Dim: 129240 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.mgz Fri Jul 14 17:11:47 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/tmp.nds7aI/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/tmp.nds7aI/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/tmp.nds7aI/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/tmp.nds7aI/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/tmp.nds7aI/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/tmp.nds7aI/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/tmp.nds7aI/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/tmp.nds7aI/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/tmp.nds7aI/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 725 values in range Counting number of voxels in first frame Found 724 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 724 724.000000 129240 0.560198 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA002 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: -14.05 -61.94 21.05 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Found 725 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA002 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 725 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 725 nlabel points Performing mapping from target back to the source label 129240 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.label 4863 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.stats sub-BANDA002 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white... Using TH3 vertex volume calc Total face volume 278288 Total vertex volume 274927 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.label" number of vertices = 1831 total surface area = 1209 mm^2 total gray matter volume = 3074 mm^3 average cortical thickness = 2.653 mm +- 0.458 mm average integrated rectified mean curvature = 0.133 average integrated rectified Gaussian curvature = 0.028 folding index = 20 intrinsic curvature index = 2.2 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 38988 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.mgz Dim: 129240 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.mgz Fri Jul 14 17:11:56 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/tmp.nOF0rd/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/tmp.nOF0rd/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/tmp.nOF0rd/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/tmp.nOF0rd/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/tmp.nOF0rd/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/tmp.nOF0rd/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/tmp.nOF0rd/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/tmp.nOF0rd/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/tmp.nOF0rd/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 1202 values in range Counting number of voxels in first frame Found 1201 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 1201 1201.000000 129240 0.929279 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA002 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: -20.11 -33.59 -7.33 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Found 1202 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA002 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 1202 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1202 nlabel points Performing mapping from target back to the source label 129240 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.label 3534 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.stats sub-BANDA002 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white... Using TH3 vertex volume calc Total face volume 278288 Total vertex volume 274927 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.label" number of vertices = 1716 total surface area = 1129 mm^2 total gray matter volume = 2792 mm^3 average cortical thickness = 3.007 mm +- 1.008 mm average integrated rectified mean curvature = 0.117 average integrated rectified Gaussian curvature = 0.029 folding index = 18 intrinsic curvature index = 2.0 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/dtifit --path rh.cbv --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/dtifit --path rh.cbv --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dmri/dtifit Pathway name: rh.cbv Subject name: sub-BANDA002 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr... Done in 0.503 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 39098 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.mgz Dim: 128775 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.mgz Fri Jul 14 17:12:05 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/tmp.KHTlqr/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/tmp.KHTlqr/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/tmp.KHTlqr/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/tmp.KHTlqr/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/tmp.KHTlqr/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/tmp.KHTlqr/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/tmp.KHTlqr/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/tmp.KHTlqr/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/tmp.KHTlqr/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2599 values in range Counting number of voxels in first frame Found 2598 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 2598 2598.000000 128775 2.017472 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA002 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: 13.96 -67.82 27.65 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Found 2599 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA002 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2599 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2599 nlabel points Performing mapping from target back to the source label 128775 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.label 8703 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.stats sub-BANDA002 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white... Using TH3 vertex volume calc Total face volume 270308 Total vertex volume 266908 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.label" number of vertices = 4988 total surface area = 3302 mm^2 total gray matter volume = 8849 mm^3 average cortical thickness = 2.452 mm +- 0.555 mm average integrated rectified mean curvature = 0.121 average integrated rectified Gaussian curvature = 0.024 folding index = 66 intrinsic curvature index = 4.8 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 39098 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.mgz Dim: 128775 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.mgz Fri Jul 14 17:12:15 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/tmp.CtccC0/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/tmp.CtccC0/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/tmp.CtccC0/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/tmp.CtccC0/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/tmp.CtccC0/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/tmp.CtccC0/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/tmp.CtccC0/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/tmp.CtccC0/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/tmp.CtccC0/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 1975 values in range Counting number of voxels in first frame Found 1974 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 1974 1974.000000 128775 1.532906 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA002 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: 28.06 -23.83 -6.57 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Found 1975 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA002 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 1975 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1975 nlabel points Performing mapping from target back to the source label 128775 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.label 5412 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.stats sub-BANDA002 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white... Using TH3 vertex volume calc Total face volume 270308 Total vertex volume 266908 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.label" number of vertices = 3395 total surface area = 2337 mm^2 total gray matter volume = 6172 mm^3 average cortical thickness = 3.106 mm +- 1.021 mm average integrated rectified mean curvature = 0.117 average integrated rectified Gaussian curvature = 0.025 folding index = 36 intrinsic curvature index = 3.4 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/dtifit --path lh.cst --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/dtifit --path lh.cst --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dmri/dtifit Pathway name: lh.cst Subject name: sub-BANDA002 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr... Done in 0.496 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 38988 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.mgz Dim: 129240 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.mgz Fri Jul 14 17:12:25 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/tmp.oHUokp/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/tmp.oHUokp/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/tmp.oHUokp/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/tmp.oHUokp/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/tmp.oHUokp/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/tmp.oHUokp/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/tmp.oHUokp/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/tmp.oHUokp/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/tmp.oHUokp/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 3190 values in range Counting number of voxels in first frame Found 3189 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 3189 3189.000000 129240 2.467502 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA002 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: -21.00 -24.98 50.95 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Found 3190 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA002 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 3190 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3190 nlabel points Performing mapping from target back to the source label 129240 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.label 14629 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.stats sub-BANDA002 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white... Using TH3 vertex volume calc Total face volume 278288 Total vertex volume 274927 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.label" number of vertices = 9328 total surface area = 5945 mm^2 total gray matter volume = 20362 mm^3 average cortical thickness = 2.939 mm +- 0.675 mm average integrated rectified mean curvature = 0.107 average integrated rectified Gaussian curvature = 0.020 folding index = 89 intrinsic curvature index = 7.1 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/dtifit --path rh.cst --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/dtifit --path rh.cst --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dmri/dtifit Pathway name: rh.cst Subject name: sub-BANDA002 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr... Done in 0.43 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 39098 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.mgz Dim: 128775 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.mgz Fri Jul 14 17:12:35 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/tmp.GN7gOD/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/tmp.GN7gOD/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/tmp.GN7gOD/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/tmp.GN7gOD/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/tmp.GN7gOD/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/tmp.GN7gOD/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/tmp.GN7gOD/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/tmp.GN7gOD/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/tmp.GN7gOD/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 3067 values in range Counting number of voxels in first frame Found 3066 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 3066 3066.000000 128775 2.380897 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA002 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: 11.20 -25.37 54.81 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Found 3067 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA002 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 3067 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3067 nlabel points Performing mapping from target back to the source label 128775 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.label 10708 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.stats sub-BANDA002 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white... Using TH3 vertex volume calc Total face volume 270308 Total vertex volume 266908 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.label" number of vertices = 6934 total surface area = 4575 mm^2 total gray matter volume = 14762 mm^3 average cortical thickness = 2.855 mm +- 0.673 mm average integrated rectified mean curvature = 0.107 average integrated rectified Gaussian curvature = 0.020 folding index = 60 intrinsic curvature index = 5.4 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/dtifit --path lh.emc --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/dtifit --path lh.emc --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dmri/dtifit Pathway name: lh.emc Subject name: sub-BANDA002 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr... Done in 0.587 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 38988 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.mgz Dim: 129240 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.mgz Fri Jul 14 17:12:45 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/tmp.SKvh8O/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/tmp.SKvh8O/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/tmp.SKvh8O/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/tmp.SKvh8O/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/tmp.SKvh8O/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/tmp.SKvh8O/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/tmp.SKvh8O/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/tmp.SKvh8O/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/tmp.SKvh8O/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2670 values in range Counting number of voxels in first frame Found 2669 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 2669 2669.000000 129240 2.065150 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA002 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: -34.72 31.35 13.71 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Found 2670 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA002 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2670 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2670 nlabel points Performing mapping from target back to the source label 129240 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.label 8572 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.stats sub-BANDA002 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white... Using TH3 vertex volume calc Total face volume 278288 Total vertex volume 274927 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.label" number of vertices = 5956 total surface area = 3969 mm^2 total gray matter volume = 14656 mm^3 average cortical thickness = 3.066 mm +- 0.651 mm average integrated rectified mean curvature = 0.132 average integrated rectified Gaussian curvature = 0.031 folding index = 97 intrinsic curvature index = 7.1 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 38988 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.mgz Dim: 129240 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.mgz Fri Jul 14 17:12:55 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/tmp.AH3gai/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/tmp.AH3gai/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/tmp.AH3gai/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/tmp.AH3gai/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/tmp.AH3gai/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/tmp.AH3gai/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/tmp.AH3gai/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/tmp.AH3gai/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/tmp.AH3gai/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2906 values in range Counting number of voxels in first frame Found 2905 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 2905 2905.000000 129240 2.247756 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA002 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: -45.15 -21.10 -12.37 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Found 2906 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA002 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2906 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2906 nlabel points Performing mapping from target back to the source label 129240 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.label 9095 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.stats sub-BANDA002 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white... Using TH3 vertex volume calc Total face volume 278288 Total vertex volume 274927 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.label" number of vertices = 5395 total surface area = 3609 mm^2 total gray matter volume = 11813 mm^3 average cortical thickness = 2.969 mm +- 0.667 mm average integrated rectified mean curvature = 0.120 average integrated rectified Gaussian curvature = 0.024 folding index = 71 intrinsic curvature index = 5.5 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/dtifit --path rh.emc --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/dtifit --path rh.emc --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dmri/dtifit Pathway name: rh.emc Subject name: sub-BANDA002 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr... Done in 0.433 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 39098 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.mgz Dim: 128775 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.mgz Fri Jul 14 17:13:06 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/tmp.DK6NHJ/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/tmp.DK6NHJ/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/tmp.DK6NHJ/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/tmp.DK6NHJ/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/tmp.DK6NHJ/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/tmp.DK6NHJ/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/tmp.DK6NHJ/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/tmp.DK6NHJ/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/tmp.DK6NHJ/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 3031 values in range Counting number of voxels in first frame Found 3030 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 3030 3030.000000 128775 2.352941 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA002 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: 30.01 35.69 16.56 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Found 3031 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA002 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 3031 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3031 nlabel points Performing mapping from target back to the source label 128775 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.label 8169 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.stats sub-BANDA002 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white... Using TH3 vertex volume calc Total face volume 270308 Total vertex volume 266908 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.label" number of vertices = 5801 total surface area = 3899 mm^2 total gray matter volume = 15066 mm^3 average cortical thickness = 3.006 mm +- 0.731 mm average integrated rectified mean curvature = 0.136 average integrated rectified Gaussian curvature = 0.035 folding index = 103 intrinsic curvature index = 8.5 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 39098 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.mgz Dim: 128775 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.mgz Fri Jul 14 17:13:15 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/tmp.9niFNf/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/tmp.9niFNf/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/tmp.9niFNf/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/tmp.9niFNf/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/tmp.9niFNf/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/tmp.9niFNf/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/tmp.9niFNf/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/tmp.9niFNf/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/tmp.9niFNf/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 3022 values in range Counting number of voxels in first frame Found 3021 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 3021 3021.000000 128775 2.345952 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA002 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: 51.46 -22.52 -3.59 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Found 3022 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA002 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 3022 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3022 nlabel points Performing mapping from target back to the source label 128775 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.label 9941 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.stats sub-BANDA002 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white... Using TH3 vertex volume calc Total face volume 270308 Total vertex volume 266908 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.label" number of vertices = 6160 total surface area = 4138 mm^2 total gray matter volume = 13982 mm^3 average cortical thickness = 2.937 mm +- 0.674 mm average integrated rectified mean curvature = 0.116 average integrated rectified Gaussian curvature = 0.024 folding index = 79 intrinsic curvature index = 6.1 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/dtifit --path lh.fat --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/dtifit --path lh.fat --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dmri/dtifit Pathway name: lh.fat Subject name: sub-BANDA002 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr... Done in 0.422 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 38988 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.mgz Dim: 129240 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.mgz Fri Jul 14 17:13:26 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/tmp.cUvPry/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/tmp.cUvPry/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/tmp.cUvPry/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/tmp.cUvPry/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/tmp.cUvPry/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/tmp.cUvPry/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/tmp.cUvPry/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/tmp.cUvPry/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/tmp.cUvPry/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 1853 values in range Counting number of voxels in first frame Found 1852 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 1852 1852.000000 129240 1.432993 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA002 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: -16.51 9.26 47.83 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Found 1853 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA002 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 1853 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1853 nlabel points Performing mapping from target back to the source label 129240 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.label 7516 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.stats sub-BANDA002 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white... Using TH3 vertex volume calc Total face volume 278288 Total vertex volume 274927 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.label" number of vertices = 4850 total surface area = 3264 mm^2 total gray matter volume = 12133 mm^3 average cortical thickness = 3.261 mm +- 0.603 mm average integrated rectified mean curvature = 0.122 average integrated rectified Gaussian curvature = 0.025 folding index = 61 intrinsic curvature index = 5.0 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 38988 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.mgz Dim: 129240 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.mgz Fri Jul 14 17:13:35 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/tmp.Z0bqv1/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/tmp.Z0bqv1/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/tmp.Z0bqv1/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/tmp.Z0bqv1/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/tmp.Z0bqv1/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/tmp.Z0bqv1/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/tmp.Z0bqv1/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/tmp.Z0bqv1/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/tmp.Z0bqv1/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 1293 values in range Counting number of voxels in first frame Found 1292 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 1292 1292.000000 129240 0.999690 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA002 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: -39.22 2.85 21.90 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Found 1293 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA002 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 1293 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1293 nlabel points Performing mapping from target back to the source label 129240 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.label 5409 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.stats sub-BANDA002 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white... Using TH3 vertex volume calc Total face volume 278288 Total vertex volume 274927 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.label" number of vertices = 2380 total surface area = 1598 mm^2 total gray matter volume = 4938 mm^3 average cortical thickness = 3.050 mm +- 0.483 mm average integrated rectified mean curvature = 0.120 average integrated rectified Gaussian curvature = 0.022 folding index = 22 intrinsic curvature index = 2.2 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/dtifit --path rh.fat --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/dtifit --path rh.fat --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dmri/dtifit Pathway name: rh.fat Subject name: sub-BANDA002 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr... Done in 0.418 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 39098 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.mgz Dim: 128775 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.mgz Fri Jul 14 17:13:45 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/tmp.eW9MKy/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/tmp.eW9MKy/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/tmp.eW9MKy/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/tmp.eW9MKy/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/tmp.eW9MKy/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/tmp.eW9MKy/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/tmp.eW9MKy/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/tmp.eW9MKy/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/tmp.eW9MKy/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2537 values in range Counting number of voxels in first frame Found 2536 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 2536 2536.000000 128775 1.969326 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA002 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: 7.15 2.39 55.00 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Found 2537 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA002 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2537 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2537 nlabel points Performing mapping from target back to the source label 128775 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.label 8127 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.stats sub-BANDA002 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white... Using TH3 vertex volume calc Total face volume 270308 Total vertex volume 266908 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.label" number of vertices = 5426 total surface area = 3718 mm^2 total gray matter volume = 13945 mm^3 average cortical thickness = 3.178 mm +- 0.635 mm average integrated rectified mean curvature = 0.123 average integrated rectified Gaussian curvature = 0.025 folding index = 61 intrinsic curvature index = 5.3 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 39098 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.mgz Dim: 128775 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.mgz Fri Jul 14 17:13:55 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/tmp.25GEWj/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/tmp.25GEWj/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/tmp.25GEWj/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/tmp.25GEWj/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/tmp.25GEWj/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/tmp.25GEWj/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/tmp.25GEWj/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/tmp.25GEWj/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/tmp.25GEWj/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2220 values in range Counting number of voxels in first frame Found 2219 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 2219 2219.000000 128775 1.723161 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA002 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: 36.86 8.10 29.96 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Found 2220 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA002 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2220 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2220 nlabel points Performing mapping from target back to the source label 128775 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.label 7256 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.stats sub-BANDA002 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white... Using TH3 vertex volume calc Total face volume 270308 Total vertex volume 266908 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.label" number of vertices = 4043 total surface area = 2709 mm^2 total gray matter volume = 8674 mm^3 average cortical thickness = 2.932 mm +- 0.539 mm average integrated rectified mean curvature = 0.123 average integrated rectified Gaussian curvature = 0.025 folding index = 53 intrinsic curvature index = 4.1 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/dtifit --path lh.fx --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/dtifit --path lh.fx --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dmri/dtifit Pathway name: lh.fx Subject name: sub-BANDA002 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr... Done in 0.438 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 38988 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.mgz Dim: 129240 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.mgz Fri Jul 14 17:14:05 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/tmp.yJ8lrI/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/tmp.yJ8lrI/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/tmp.yJ8lrI/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/tmp.yJ8lrI/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/tmp.yJ8lrI/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/tmp.yJ8lrI/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/tmp.yJ8lrI/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/tmp.yJ8lrI/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/tmp.yJ8lrI/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2501 values in range Counting number of voxels in first frame Found 2500 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 2500 2500.000000 129240 1.934386 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA002 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: -33.27 4.56 -16.98 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Found 2501 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA002 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2501 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2501 nlabel points Performing mapping from target back to the source label 129240 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.label 5629 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.stats sub-BANDA002 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white... Using TH3 vertex volume calc Total face volume 278288 Total vertex volume 274927 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.label" number of vertices = 3968 total surface area = 2757 mm^2 total gray matter volume = 12444 mm^3 average cortical thickness = 3.512 mm +- 0.806 mm average integrated rectified mean curvature = 0.142 average integrated rectified Gaussian curvature = 0.039 folding index = 67 intrinsic curvature index = 6.5 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/dtifit --path rh.fx --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/dtifit --path rh.fx --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dmri/dtifit Pathway name: rh.fx Subject name: sub-BANDA002 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr... Done in 0.497 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 39098 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.mgz Dim: 128775 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.mgz Fri Jul 14 17:14:15 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/tmp.YCPcne/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/tmp.YCPcne/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/tmp.YCPcne/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/tmp.YCPcne/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/tmp.YCPcne/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/tmp.YCPcne/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/tmp.YCPcne/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/tmp.YCPcne/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/tmp.YCPcne/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2808 values in range Counting number of voxels in first frame Found 2807 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 2807 2807.000000 128775 2.179771 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA002 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: 33.59 8.36 -12.96 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Found 2808 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA002 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2808 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2808 nlabel points Performing mapping from target back to the source label 128775 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.label 6264 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.stats sub-BANDA002 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white... Using TH3 vertex volume calc Total face volume 270308 Total vertex volume 266908 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.label" number of vertices = 4172 total surface area = 2887 mm^2 total gray matter volume = 11091 mm^3 average cortical thickness = 3.319 mm +- 0.985 mm average integrated rectified mean curvature = 0.136 average integrated rectified Gaussian curvature = 0.036 folding index = 71 intrinsic curvature index = 5.9 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/dtifit --path lh.ilf --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/dtifit --path lh.ilf --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dmri/dtifit Pathway name: lh.ilf Subject name: sub-BANDA002 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr... Done in 0.479 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 38988 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.mgz Dim: 129240 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.mgz Fri Jul 14 17:14:26 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/tmp.ACnZ5e/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/tmp.ACnZ5e/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/tmp.ACnZ5e/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/tmp.ACnZ5e/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/tmp.ACnZ5e/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/tmp.ACnZ5e/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/tmp.ACnZ5e/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/tmp.ACnZ5e/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/tmp.ACnZ5e/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 3050 values in range Counting number of voxels in first frame Found 3049 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 3049 3049.000000 129240 2.359177 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA002 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: -36.61 2.84 -14.70 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Found 3050 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA002 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 3050 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3050 nlabel points Performing mapping from target back to the source label 129240 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.label 6919 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.stats sub-BANDA002 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white... Using TH3 vertex volume calc Total face volume 278288 Total vertex volume 274927 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.label" number of vertices = 5063 total surface area = 3505 mm^2 total gray matter volume = 15164 mm^3 average cortical thickness = 3.412 mm +- 0.815 mm average integrated rectified mean curvature = 0.133 average integrated rectified Gaussian curvature = 0.034 folding index = 78 intrinsic curvature index = 7.2 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 38988 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.mgz Dim: 129240 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.mgz Fri Jul 14 17:14:35 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/tmp.Z6XS8x/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/tmp.Z6XS8x/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/tmp.Z6XS8x/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/tmp.Z6XS8x/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/tmp.Z6XS8x/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/tmp.Z6XS8x/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/tmp.Z6XS8x/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/tmp.Z6XS8x/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/tmp.Z6XS8x/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 3907 values in range Counting number of voxels in first frame Found 3906 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 3906 3906.000000 129240 3.022284 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA002 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: -15.33 -76.19 -5.22 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Found 3907 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA002 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 3907 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3907 nlabel points Performing mapping from target back to the source label 129240 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.label 20575 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.stats sub-BANDA002 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white... Using TH3 vertex volume calc Total face volume 278288 Total vertex volume 274927 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.label" number of vertices = 13060 total surface area = 8449 mm^2 total gray matter volume = 20678 mm^3 average cortical thickness = 2.406 mm +- 0.610 mm average integrated rectified mean curvature = 0.132 average integrated rectified Gaussian curvature = 0.029 folding index = 163 intrinsic curvature index = 15.1 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/dtifit --path rh.ilf --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/dtifit --path rh.ilf --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dmri/dtifit Pathway name: rh.ilf Subject name: sub-BANDA002 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr... Done in 0.57 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 39098 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.mgz Dim: 128775 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.mgz Fri Jul 14 17:14:47 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/tmp.RNgyjR/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/tmp.RNgyjR/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/tmp.RNgyjR/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/tmp.RNgyjR/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/tmp.RNgyjR/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/tmp.RNgyjR/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/tmp.RNgyjR/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/tmp.RNgyjR/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/tmp.RNgyjR/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2847 values in range Counting number of voxels in first frame Found 2846 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 2846 2846.000000 128775 2.210056 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA002 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: 40.40 4.12 -7.41 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Found 2847 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA002 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2847 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2847 nlabel points Performing mapping from target back to the source label 128775 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.label 8538 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.stats sub-BANDA002 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white... Using TH3 vertex volume calc Total face volume 270308 Total vertex volume 266908 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.label" number of vertices = 6153 total surface area = 4173 mm^2 total gray matter volume = 16086 mm^3 average cortical thickness = 3.267 mm +- 0.882 mm average integrated rectified mean curvature = 0.124 average integrated rectified Gaussian curvature = 0.030 folding index = 93 intrinsic curvature index = 7.7 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 39098 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.mgz Dim: 128775 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.mgz Fri Jul 14 17:14:57 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/tmp.5BtqXw/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/tmp.5BtqXw/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/tmp.5BtqXw/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/tmp.5BtqXw/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/tmp.5BtqXw/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/tmp.5BtqXw/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/tmp.5BtqXw/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/tmp.5BtqXw/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/tmp.5BtqXw/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 3272 values in range Counting number of voxels in first frame Found 3271 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 3271 3271.000000 128775 2.540089 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA002 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: 24.13 -74.52 1.04 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Found 3272 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA002 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 3272 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3272 nlabel points Performing mapping from target back to the source label 128775 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.label 22002 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.stats sub-BANDA002 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white... Using TH3 vertex volume calc Total face volume 270308 Total vertex volume 266908 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.label" number of vertices = 13073 total surface area = 8428 mm^2 total gray matter volume = 19292 mm^3 average cortical thickness = 2.297 mm +- 0.587 mm average integrated rectified mean curvature = 0.128 average integrated rectified Gaussian curvature = 0.028 folding index = 153 intrinsic curvature index = 15.1 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/dtifit --path lh.mlf --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/dtifit --path lh.mlf --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dmri/dtifit Pathway name: lh.mlf Subject name: sub-BANDA002 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr... Done in 0.501 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 38988 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.mgz Dim: 129240 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.mgz Fri Jul 14 17:15:07 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/tmp.VRwU0c/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/tmp.VRwU0c/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/tmp.VRwU0c/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/tmp.VRwU0c/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/tmp.VRwU0c/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/tmp.VRwU0c/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/tmp.VRwU0c/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/tmp.VRwU0c/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/tmp.VRwU0c/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2425 values in range Counting number of voxels in first frame Found 2424 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 2424 2424.000000 129240 1.875580 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA002 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: -43.29 -0.39 -5.59 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Found 2425 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA002 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2425 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2425 nlabel points Performing mapping from target back to the source label 129240 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.label 6404 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.stats sub-BANDA002 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white... Using TH3 vertex volume calc Total face volume 278288 Total vertex volume 274927 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.label" number of vertices = 3887 total surface area = 2597 mm^2 total gray matter volume = 11136 mm^3 average cortical thickness = 3.391 mm +- 0.770 mm average integrated rectified mean curvature = 0.122 average integrated rectified Gaussian curvature = 0.026 folding index = 57 intrinsic curvature index = 4.1 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 38988 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.mgz Dim: 129240 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.mgz Fri Jul 14 17:15:18 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/tmp.Fv8tJp/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/tmp.Fv8tJp/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/tmp.Fv8tJp/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/tmp.Fv8tJp/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/tmp.Fv8tJp/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/tmp.Fv8tJp/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/tmp.Fv8tJp/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/tmp.Fv8tJp/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/tmp.Fv8tJp/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2316 values in range Counting number of voxels in first frame Found 2315 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 2315 2315.000000 129240 1.791241 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA002 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: -18.32 -72.55 25.49 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Found 2316 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA002 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2316 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2316 nlabel points Performing mapping from target back to the source label 129240 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.label 15875 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.stats sub-BANDA002 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white... Using TH3 vertex volume calc Total face volume 278288 Total vertex volume 274927 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.label" number of vertices = 9023 total surface area = 5922 mm^2 total gray matter volume = 17365 mm^3 average cortical thickness = 2.607 mm +- 0.535 mm average integrated rectified mean curvature = 0.121 average integrated rectified Gaussian curvature = 0.025 folding index = 119 intrinsic curvature index = 8.2 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/dtifit --path rh.mlf --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/dtifit --path rh.mlf --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dmri/dtifit Pathway name: rh.mlf Subject name: sub-BANDA002 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr... Done in 0.473 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 39098 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.mgz Dim: 128775 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.mgz Fri Jul 14 17:15:28 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/tmp.gRf76t/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/tmp.gRf76t/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/tmp.gRf76t/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/tmp.gRf76t/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/tmp.gRf76t/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/tmp.gRf76t/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/tmp.gRf76t/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/tmp.gRf76t/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/tmp.gRf76t/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2385 values in range Counting number of voxels in first frame Found 2384 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 2384 2384.000000 128775 1.851291 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA002 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: 45.66 2.93 3.80 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Found 2385 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA002 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2385 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2385 nlabel points Performing mapping from target back to the source label 128775 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.label 6872 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.stats sub-BANDA002 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white... Using TH3 vertex volume calc Total face volume 270308 Total vertex volume 266908 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.label" number of vertices = 3837 total surface area = 2559 mm^2 total gray matter volume = 10051 mm^3 average cortical thickness = 3.217 mm +- 0.731 mm average integrated rectified mean curvature = 0.116 average integrated rectified Gaussian curvature = 0.025 folding index = 54 intrinsic curvature index = 3.8 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 39098 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.mgz Dim: 128775 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.mgz Fri Jul 14 17:15:38 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/tmp.KiTSzc/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/tmp.KiTSzc/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/tmp.KiTSzc/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/tmp.KiTSzc/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/tmp.KiTSzc/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/tmp.KiTSzc/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/tmp.KiTSzc/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/tmp.KiTSzc/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/tmp.KiTSzc/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2477 values in range Counting number of voxels in first frame Found 2476 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 2476 2476.000000 128775 1.922733 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA002 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: 25.12 -73.41 19.14 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Found 2477 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA002 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2477 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2477 nlabel points Performing mapping from target back to the source label 128775 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.label 18877 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.stats sub-BANDA002 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white... Using TH3 vertex volume calc Total face volume 270308 Total vertex volume 266908 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.label" number of vertices = 10023 total surface area = 6486 mm^2 total gray matter volume = 16332 mm^3 average cortical thickness = 2.432 mm +- 0.519 mm average integrated rectified mean curvature = 0.121 average integrated rectified Gaussian curvature = 0.024 folding index = 114 intrinsic curvature index = 9.5 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.or_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/dtifit --path lh.or --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.or_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/dtifit --path lh.or --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/lh.or_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dmri/dtifit Pathway name: lh.or Subject name: sub-BANDA002 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/lh.or_avg16_syn_bbr... Done in 0.466 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 38988 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/endpt2.surf.mgz Dim: 129240 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/endpt2.surf.mgz Fri Jul 14 17:15:48 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/tmp.I4Bl1j/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/tmp.I4Bl1j/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/tmp.I4Bl1j/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/tmp.I4Bl1j/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/tmp.I4Bl1j/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/tmp.I4Bl1j/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/tmp.I4Bl1j/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/tmp.I4Bl1j/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/tmp.I4Bl1j/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2698 values in range Counting number of voxels in first frame Found 2697 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 2697 2697.000000 129240 2.086815 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA002 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: -16.41 -78.71 -5.59 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Found 2698 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA002 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2698 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2698 nlabel points Performing mapping from target back to the source label 129240 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/endpt2.surf.label 14701 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/endpt2.surf.stats sub-BANDA002 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white... Using TH3 vertex volume calc Total face volume 278288 Total vertex volume 274927 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.or_avg16_syn_bbr/endpt2.surf.label" number of vertices = 7380 total surface area = 4700 mm^2 total gray matter volume = 11425 mm^3 average cortical thickness = 2.467 mm +- 0.558 mm average integrated rectified mean curvature = 0.135 average integrated rectified Gaussian curvature = 0.029 folding index = 88 intrinsic curvature index = 8.7 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.or_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/dtifit --path rh.or --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.or_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/dtifit --path rh.or --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/rh.or_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dmri/dtifit Pathway name: rh.or Subject name: sub-BANDA002 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/rh.or_avg16_syn_bbr... Done in 0.562 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 39098 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/endpt2.surf.mgz Dim: 128775 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/endpt2.surf.mgz Fri Jul 14 17:15:58 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/tmp.f56J0L/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/tmp.f56J0L/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/tmp.f56J0L/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/tmp.f56J0L/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/tmp.f56J0L/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/tmp.f56J0L/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/tmp.f56J0L/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/tmp.f56J0L/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/tmp.f56J0L/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 3771 values in range Counting number of voxels in first frame Found 3770 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 3770 3770.000000 128775 2.927587 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA002 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: 20.56 -79.74 0.06 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Found 3771 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA002 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 3771 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3771 nlabel points Performing mapping from target back to the source label 128775 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/endpt2.surf.label 15731 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/endpt2.surf.stats sub-BANDA002 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white... Using TH3 vertex volume calc Total face volume 270308 Total vertex volume 266908 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.or_avg16_syn_bbr/endpt2.surf.label" number of vertices = 10311 total surface area = 6433 mm^2 total gray matter volume = 14836 mm^3 average cortical thickness = 2.233 mm +- 0.563 mm average integrated rectified mean curvature = 0.131 average integrated rectified Gaussian curvature = 0.029 folding index = 130 intrinsic curvature index = 12.3 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/dtifit --path lh.slf1 --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/dtifit --path lh.slf1 --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dmri/dtifit Pathway name: lh.slf1 Subject name: sub-BANDA002 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr... Done in 0.517 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 38988 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.mgz Dim: 129240 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.mgz Fri Jul 14 17:16:09 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/tmp.JFtd7J/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/tmp.JFtd7J/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/tmp.JFtd7J/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/tmp.JFtd7J/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/tmp.JFtd7J/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/tmp.JFtd7J/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/tmp.JFtd7J/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/tmp.JFtd7J/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/tmp.JFtd7J/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 3337 values in range Counting number of voxels in first frame Found 3336 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 3336 3336.000000 129240 2.581244 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA002 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: -16.15 14.15 49.04 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Found 3337 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA002 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 3337 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3337 nlabel points Performing mapping from target back to the source label 129240 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.label 11859 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.stats sub-BANDA002 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white... Using TH3 vertex volume calc Total face volume 278288 Total vertex volume 274927 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.label" number of vertices = 8432 total surface area = 5672 mm^2 total gray matter volume = 22160 mm^3 average cortical thickness = 3.260 mm +- 0.660 mm average integrated rectified mean curvature = 0.129 average integrated rectified Gaussian curvature = 0.029 folding index = 115 intrinsic curvature index = 9.9 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 38988 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.mgz Dim: 129240 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.mgz Fri Jul 14 17:16:19 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/tmp.fFx79O/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/tmp.fFx79O/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/tmp.fFx79O/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/tmp.fFx79O/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/tmp.fFx79O/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/tmp.fFx79O/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/tmp.fFx79O/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/tmp.fFx79O/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/tmp.fFx79O/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 3300 values in range Counting number of voxels in first frame Found 3299 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 3299 3299.000000 129240 2.552615 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA002 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: -12.73 -62.28 38.90 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Found 3300 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA002 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 3300 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3300 nlabel points Performing mapping from target back to the source label 129240 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.label 10070 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.stats sub-BANDA002 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white... Using TH3 vertex volume calc Total face volume 278288 Total vertex volume 274927 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.label" number of vertices = 6692 total surface area = 4473 mm^2 total gray matter volume = 14351 mm^3 average cortical thickness = 2.731 mm +- 0.580 mm average integrated rectified mean curvature = 0.125 average integrated rectified Gaussian curvature = 0.026 folding index = 94 intrinsic curvature index = 6.7 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/dtifit --path rh.slf1 --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/dtifit --path rh.slf1 --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dmri/dtifit Pathway name: rh.slf1 Subject name: sub-BANDA002 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr... Done in 0.62 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 39098 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.mgz Dim: 128775 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.mgz Fri Jul 14 17:16:30 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/tmp.nK3Vvs/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/tmp.nK3Vvs/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/tmp.nK3Vvs/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/tmp.nK3Vvs/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/tmp.nK3Vvs/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/tmp.nK3Vvs/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/tmp.nK3Vvs/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/tmp.nK3Vvs/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/tmp.nK3Vvs/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2718 values in range Counting number of voxels in first frame Found 2717 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 2717 2717.000000 128775 2.109882 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA002 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: 8.32 26.09 43.48 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Found 2718 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA002 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2718 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2718 nlabel points Performing mapping from target back to the source label 128775 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.label 13280 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.stats sub-BANDA002 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white... Using TH3 vertex volume calc Total face volume 270308 Total vertex volume 266908 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.label" number of vertices = 8328 total surface area = 5654 mm^2 total gray matter volume = 19427 mm^3 average cortical thickness = 3.004 mm +- 0.619 mm average integrated rectified mean curvature = 0.128 average integrated rectified Gaussian curvature = 0.029 folding index = 107 intrinsic curvature index = 9.4 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 39098 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.mgz Dim: 128775 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.mgz Fri Jul 14 17:16:40 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/tmp.no5H2E/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/tmp.no5H2E/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/tmp.no5H2E/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/tmp.no5H2E/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/tmp.no5H2E/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/tmp.no5H2E/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/tmp.no5H2E/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/tmp.no5H2E/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/tmp.no5H2E/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 3558 values in range Counting number of voxels in first frame Found 3557 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 3557 3557.000000 128775 2.762182 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA002 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: 10.23 -59.91 40.89 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Found 3558 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA002 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 3558 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3558 nlabel points Performing mapping from target back to the source label 128775 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.label 9640 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.stats sub-BANDA002 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white... Using TH3 vertex volume calc Total face volume 270308 Total vertex volume 266908 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.label" number of vertices = 6224 total surface area = 4148 mm^2 total gray matter volume = 12037 mm^3 average cortical thickness = 2.503 mm +- 0.602 mm average integrated rectified mean curvature = 0.126 average integrated rectified Gaussian curvature = 0.026 folding index = 89 intrinsic curvature index = 6.6 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/dtifit --path lh.slf2 --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/dtifit --path lh.slf2 --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dmri/dtifit Pathway name: lh.slf2 Subject name: sub-BANDA002 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr... Done in 0.506 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 38988 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.mgz Dim: 129240 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.mgz Fri Jul 14 17:16:50 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/tmp.208UyT/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/tmp.208UyT/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/tmp.208UyT/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/tmp.208UyT/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/tmp.208UyT/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/tmp.208UyT/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/tmp.208UyT/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/tmp.208UyT/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/tmp.208UyT/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 3182 values in range Counting number of voxels in first frame Found 3181 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 3181 3181.000000 129240 2.461312 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA002 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: -28.97 25.16 31.63 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Found 3182 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA002 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 3182 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3182 nlabel points Performing mapping from target back to the source label 129240 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.label 17707 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.stats sub-BANDA002 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white... Using TH3 vertex volume calc Total face volume 278288 Total vertex volume 274927 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.label" number of vertices = 9264 total surface area = 6136 mm^2 total gray matter volume = 17478 mm^3 average cortical thickness = 2.768 mm +- 0.534 mm average integrated rectified mean curvature = 0.123 average integrated rectified Gaussian curvature = 0.027 folding index = 119 intrinsic curvature index = 10.4 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 38988 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.mgz Dim: 129240 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.mgz Fri Jul 14 17:17:00 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/tmp.CGq9lN/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/tmp.CGq9lN/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/tmp.CGq9lN/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/tmp.CGq9lN/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/tmp.CGq9lN/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/tmp.CGq9lN/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/tmp.CGq9lN/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/tmp.CGq9lN/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/tmp.CGq9lN/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 3707 values in range Counting number of voxels in first frame Found 3706 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 3706 3706.000000 129240 2.867533 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA002 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: -33.63 -62.81 19.29 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Found 3707 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA002 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 3707 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3707 nlabel points Performing mapping from target back to the source label 129240 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.label 15247 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.stats sub-BANDA002 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white... Using TH3 vertex volume calc Total face volume 278288 Total vertex volume 274927 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.label" number of vertices = 9281 total surface area = 6234 mm^2 total gray matter volume = 18633 mm^3 average cortical thickness = 2.735 mm +- 0.637 mm average integrated rectified mean curvature = 0.119 average integrated rectified Gaussian curvature = 0.022 folding index = 112 intrinsic curvature index = 8.2 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/dtifit --path rh.slf2 --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/dtifit --path rh.slf2 --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dmri/dtifit Pathway name: rh.slf2 Subject name: sub-BANDA002 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr... Done in 0.619 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 39098 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.mgz Dim: 128775 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.mgz Fri Jul 14 17:17:11 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/tmp.HaYvGy/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/tmp.HaYvGy/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/tmp.HaYvGy/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/tmp.HaYvGy/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/tmp.HaYvGy/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/tmp.HaYvGy/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/tmp.HaYvGy/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/tmp.HaYvGy/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/tmp.HaYvGy/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 3790 values in range Counting number of voxels in first frame Found 3789 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 3789 3789.000000 128775 2.942341 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA002 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: 22.99 20.53 41.23 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Found 3790 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA002 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 3790 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3790 nlabel points Performing mapping from target back to the source label 128775 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.label 13315 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.stats sub-BANDA002 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white... Using TH3 vertex volume calc Total face volume 270308 Total vertex volume 266908 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.label" number of vertices = 8106 total surface area = 5561 mm^2 total gray matter volume = 17142 mm^3 average cortical thickness = 2.749 mm +- 0.560 mm average integrated rectified mean curvature = 0.131 average integrated rectified Gaussian curvature = 0.028 folding index = 111 intrinsic curvature index = 10.2 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 39098 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.mgz Dim: 128775 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.mgz Fri Jul 14 17:17:22 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/tmp.ZH5tdZ/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/tmp.ZH5tdZ/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/tmp.ZH5tdZ/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/tmp.ZH5tdZ/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/tmp.ZH5tdZ/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/tmp.ZH5tdZ/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/tmp.ZH5tdZ/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/tmp.ZH5tdZ/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/tmp.ZH5tdZ/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 3600 values in range Counting number of voxels in first frame Found 3599 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 3599 3599.000000 128775 2.794797 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA002 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: 35.96 -60.82 24.08 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Found 3600 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA002 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 3600 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3600 nlabel points Performing mapping from target back to the source label 128775 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.label 14311 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.stats sub-BANDA002 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white... Using TH3 vertex volume calc Total face volume 270308 Total vertex volume 266908 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.label" number of vertices = 8312 total surface area = 5537 mm^2 total gray matter volume = 15364 mm^3 average cortical thickness = 2.689 mm +- 0.560 mm average integrated rectified mean curvature = 0.123 average integrated rectified Gaussian curvature = 0.023 folding index = 98 intrinsic curvature index = 8.3 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/dtifit --path lh.slf3 --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/dtifit --path lh.slf3 --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dmri/dtifit Pathway name: lh.slf3 Subject name: sub-BANDA002 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr... Done in 0.476 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 38988 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.mgz Dim: 129240 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.mgz Fri Jul 14 17:17:33 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/tmp.2qFNfD/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/tmp.2qFNfD/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/tmp.2qFNfD/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/tmp.2qFNfD/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/tmp.2qFNfD/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/tmp.2qFNfD/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/tmp.2qFNfD/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/tmp.2qFNfD/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/tmp.2qFNfD/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2246 values in range Counting number of voxels in first frame Found 2245 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 2245 2245.000000 129240 1.737078 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA002 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: -36.19 15.32 26.83 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Found 2246 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA002 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2246 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2246 nlabel points Performing mapping from target back to the source label 129240 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.label 9623 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.stats sub-BANDA002 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white... Using TH3 vertex volume calc Total face volume 278288 Total vertex volume 274927 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.label" number of vertices = 5400 total surface area = 3543 mm^2 total gray matter volume = 10485 mm^3 average cortical thickness = 2.881 mm +- 0.553 mm average integrated rectified mean curvature = 0.119 average integrated rectified Gaussian curvature = 0.023 folding index = 52 intrinsic curvature index = 5.1 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 38988 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.mgz Dim: 129240 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.mgz Fri Jul 14 17:17:42 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/tmp.vkgtIn/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/tmp.vkgtIn/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/tmp.vkgtIn/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/tmp.vkgtIn/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/tmp.vkgtIn/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/tmp.vkgtIn/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/tmp.vkgtIn/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/tmp.vkgtIn/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/tmp.vkgtIn/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2887 values in range Counting number of voxels in first frame Found 2886 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 2886 2886.000000 129240 2.233055 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA002 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: -42.28 -43.70 23.97 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Found 2887 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA002 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2887 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2887 nlabel points Performing mapping from target back to the source label 129240 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.label 12950 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.stats sub-BANDA002 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white... Using TH3 vertex volume calc Total face volume 278288 Total vertex volume 274927 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.label" number of vertices = 7488 total surface area = 5033 mm^2 total gray matter volume = 14092 mm^3 average cortical thickness = 2.763 mm +- 0.585 mm average integrated rectified mean curvature = 0.118 average integrated rectified Gaussian curvature = 0.022 folding index = 77 intrinsic curvature index = 6.7 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/dtifit --path rh.slf3 --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/dtifit --path rh.slf3 --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dmri/dtifit Pathway name: rh.slf3 Subject name: sub-BANDA002 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr... Done in 0.473 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 39098 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.mgz Dim: 128775 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.mgz Fri Jul 14 17:17:53 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/tmp.h21Q3l/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/tmp.h21Q3l/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/tmp.h21Q3l/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/tmp.h21Q3l/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/tmp.h21Q3l/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/tmp.h21Q3l/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/tmp.h21Q3l/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/tmp.h21Q3l/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/tmp.h21Q3l/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 3291 values in range Counting number of voxels in first frame Found 3290 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 3290 3290.000000 128775 2.554844 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA002 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: 31.73 19.47 31.18 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Found 3291 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA002 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 3291 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3291 nlabel points Performing mapping from target back to the source label 128775 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.label 11986 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.stats sub-BANDA002 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white... Using TH3 vertex volume calc Total face volume 270308 Total vertex volume 266908 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.label" number of vertices = 8022 total surface area = 5471 mm^2 total gray matter volume = 17473 mm^3 average cortical thickness = 2.843 mm +- 0.588 mm average integrated rectified mean curvature = 0.130 average integrated rectified Gaussian curvature = 0.029 folding index = 118 intrinsic curvature index = 9.7 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 39098 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.mgz Dim: 128775 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.mgz Fri Jul 14 17:18:03 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/tmp.0EqpID/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/tmp.0EqpID/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/tmp.0EqpID/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/tmp.0EqpID/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/tmp.0EqpID/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/tmp.0EqpID/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/tmp.0EqpID/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/tmp.0EqpID/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/tmp.0EqpID/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 3509 values in range Counting number of voxels in first frame Found 3508 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 3508 3508.000000 128775 2.724131 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA002 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: 38.17 -50.00 31.28 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Found 3509 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA002 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 3509 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3509 nlabel points Performing mapping from target back to the source label 128775 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.label 14067 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.stats sub-BANDA002 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white... Using TH3 vertex volume calc Total face volume 270308 Total vertex volume 266908 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.label" number of vertices = 8167 total surface area = 5411 mm^2 total gray matter volume = 14882 mm^3 average cortical thickness = 2.706 mm +- 0.528 mm average integrated rectified mean curvature = 0.119 average integrated rectified Gaussian curvature = 0.023 folding index = 86 intrinsic curvature index = 7.7 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/dtifit --path lh.uf --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/dtifit --path lh.uf --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dmri/dtifit Pathway name: lh.uf Subject name: sub-BANDA002 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr... Done in 0.494 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 38988 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.mgz Dim: 129240 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.mgz Fri Jul 14 17:18:13 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/tmp.v5VihS/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/tmp.v5VihS/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/tmp.v5VihS/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/tmp.v5VihS/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/tmp.v5VihS/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/tmp.v5VihS/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/tmp.v5VihS/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/tmp.v5VihS/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/tmp.v5VihS/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2255 values in range Counting number of voxels in first frame Found 2254 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 2254 2254.000000 129240 1.744042 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA002 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: -18.63 48.81 19.89 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Found 2255 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA002 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2255 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2255 nlabel points Performing mapping from target back to the source label 129240 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.label 7124 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.stats sub-BANDA002 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white... Using TH3 vertex volume calc Total face volume 278288 Total vertex volume 274927 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.label" number of vertices = 4822 total surface area = 3323 mm^2 total gray matter volume = 11700 mm^3 average cortical thickness = 2.861 mm +- 0.648 mm average integrated rectified mean curvature = 0.149 average integrated rectified Gaussian curvature = 0.036 folding index = 90 intrinsic curvature index = 6.8 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 38988 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.mgz Dim: 129240 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.mgz Fri Jul 14 17:18:23 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/tmp.fH783l/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/tmp.fH783l/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/tmp.fH783l/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/tmp.fH783l/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/tmp.fH783l/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/tmp.fH783l/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/tmp.fH783l/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/tmp.fH783l/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/tmp.fH783l/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2033 values in range Counting number of voxels in first frame Found 2032 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 2032 2032.000000 129240 1.572269 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA002 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: -35.88 7.99 -15.10 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Found 2033 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA002 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2033 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2033 nlabel points Performing mapping from target back to the source label 129240 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.label 4327 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.stats sub-BANDA002 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white... Using TH3 vertex volume calc Total face volume 278288 Total vertex volume 274927 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.label" number of vertices = 2989 total surface area = 2079 mm^2 total gray matter volume = 10452 mm^3 average cortical thickness = 3.666 mm +- 0.749 mm average integrated rectified mean curvature = 0.149 average integrated rectified Gaussian curvature = 0.044 folding index = 59 intrinsic curvature index = 5.6 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/dtifit --path rh.uf --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/dtifit --path rh.uf --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dmri/dtifit Pathway name: rh.uf Subject name: sub-BANDA002 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr... Done in 0.466 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 39098 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.mgz Dim: 128775 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.mgz Fri Jul 14 17:18:33 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/tmp.FlNLht/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/tmp.FlNLht/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/tmp.FlNLht/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/tmp.FlNLht/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/tmp.FlNLht/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/tmp.FlNLht/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/tmp.FlNLht/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/tmp.FlNLht/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/tmp.FlNLht/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2421 values in range Counting number of voxels in first frame Found 2420 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 2420 2420.000000 128775 1.879247 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA002 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: 9.32 49.53 20.59 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Found 2421 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA002 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2421 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2421 nlabel points Performing mapping from target back to the source label 128775 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.label 7065 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.stats sub-BANDA002 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white... Using TH3 vertex volume calc Total face volume 270308 Total vertex volume 266908 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.label" number of vertices = 4950 total surface area = 3390 mm^2 total gray matter volume = 12693 mm^3 average cortical thickness = 3.034 mm +- 0.729 mm average integrated rectified mean curvature = 0.155 average integrated rectified Gaussian curvature = 0.042 folding index = 114 intrinsic curvature index = 8.0 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 39098 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.mgz Dim: 128775 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.mgz Fri Jul 14 17:18:44 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/tmp.vALYXi/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/tmp.vALYXi/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/tmp.vALYXi/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/tmp.vALYXi/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/tmp.vALYXi/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/tmp.vALYXi/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/tmp.vALYXi/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/tmp.vALYXi/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/tmp.vALYXi/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2546 values in range Counting number of voxels in first frame Found 2545 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 2545 2545.000000 128775 1.976315 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA002 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: 36.11 11.68 -9.22 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Found 2546 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA002 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2546 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2546 nlabel points Performing mapping from target back to the source label 128775 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.label 5302 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.stats sub-BANDA002 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white... Using TH3 vertex volume calc Total face volume 270308 Total vertex volume 266908 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.label" number of vertices = 3782 total surface area = 2629 mm^2 total gray matter volume = 12124 mm^3 average cortical thickness = 3.620 mm +- 0.823 mm average integrated rectified mean curvature = 0.139 average integrated rectified Gaussian curvature = 0.035 folding index = 70 intrinsic curvature index = 5.3 /usr/local/freesurfer/7.3.2//bin/dmri_mergepaths --indir /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath --in acomm_avg16_syn_bbr/path.pd.nii.gz cc.bodyc_avg16_syn_bbr/path.pd.nii.gz cc.bodyp_avg16_syn_bbr/path.pd.nii.gz cc.bodypf_avg16_syn_bbr/path.pd.nii.gz cc.bodypm_avg16_syn_bbr/path.pd.nii.gz cc.bodyt_avg16_syn_bbr/path.pd.nii.gz cc.genu_avg16_syn_bbr/path.pd.nii.gz cc.rostrum_avg16_syn_bbr/path.pd.nii.gz cc.splenium_avg16_syn_bbr/path.pd.nii.gz lh.af_avg16_syn_bbr/path.pd.nii.gz lh.ar_avg16_syn_bbr/path.pd.nii.gz lh.atr_avg16_syn_bbr/path.pd.nii.gz lh.cbd_avg16_syn_bbr/path.pd.nii.gz lh.cbv_avg16_syn_bbr/path.pd.nii.gz lh.cst_avg16_syn_bbr/path.pd.nii.gz lh.emc_avg16_syn_bbr/path.pd.nii.gz lh.fat_avg16_syn_bbr/path.pd.nii.gz lh.fx_avg16_syn_bbr/path.pd.nii.gz lh.ilf_avg16_syn_bbr/path.pd.nii.gz lh.mlf_avg16_syn_bbr/path.pd.nii.gz lh.or_avg16_syn_bbr/path.pd.nii.gz lh.slf1_avg16_syn_bbr/path.pd.nii.gz lh.slf2_avg16_syn_bbr/path.pd.nii.gz lh.slf3_avg16_syn_bbr/path.pd.nii.gz lh.uf_avg16_syn_bbr/path.pd.nii.gz mcp_avg16_syn_bbr/path.pd.nii.gz rh.af_avg16_syn_bbr/path.pd.nii.gz rh.ar_avg16_syn_bbr/path.pd.nii.gz rh.atr_avg16_syn_bbr/path.pd.nii.gz rh.cbd_avg16_syn_bbr/path.pd.nii.gz rh.cbv_avg16_syn_bbr/path.pd.nii.gz rh.cst_avg16_syn_bbr/path.pd.nii.gz rh.emc_avg16_syn_bbr/path.pd.nii.gz rh.fat_avg16_syn_bbr/path.pd.nii.gz rh.fx_avg16_syn_bbr/path.pd.nii.gz rh.ilf_avg16_syn_bbr/path.pd.nii.gz rh.mlf_avg16_syn_bbr/path.pd.nii.gz rh.or_avg16_syn_bbr/path.pd.nii.gz rh.slf1_avg16_syn_bbr/path.pd.nii.gz rh.slf2_avg16_syn_bbr/path.pd.nii.gz rh.slf3_avg16_syn_bbr/path.pd.nii.gz rh.uf_avg16_syn_bbr/path.pd.nii.gz --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/merged_avg16_syn_bbr.mgz --ctab /usr/local/freesurfer/7.3.2//FreeSurferColorLUT.txt --thresh .2 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_mergepaths --indir /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath --in acomm_avg16_syn_bbr/path.pd.nii.gz cc.bodyc_avg16_syn_bbr/path.pd.nii.gz cc.bodyp_avg16_syn_bbr/path.pd.nii.gz cc.bodypf_avg16_syn_bbr/path.pd.nii.gz cc.bodypm_avg16_syn_bbr/path.pd.nii.gz cc.bodyt_avg16_syn_bbr/path.pd.nii.gz cc.genu_avg16_syn_bbr/path.pd.nii.gz cc.rostrum_avg16_syn_bbr/path.pd.nii.gz cc.splenium_avg16_syn_bbr/path.pd.nii.gz lh.af_avg16_syn_bbr/path.pd.nii.gz lh.ar_avg16_syn_bbr/path.pd.nii.gz lh.atr_avg16_syn_bbr/path.pd.nii.gz lh.cbd_avg16_syn_bbr/path.pd.nii.gz lh.cbv_avg16_syn_bbr/path.pd.nii.gz lh.cst_avg16_syn_bbr/path.pd.nii.gz lh.emc_avg16_syn_bbr/path.pd.nii.gz lh.fat_avg16_syn_bbr/path.pd.nii.gz lh.fx_avg16_syn_bbr/path.pd.nii.gz lh.ilf_avg16_syn_bbr/path.pd.nii.gz lh.mlf_avg16_syn_bbr/path.pd.nii.gz lh.or_avg16_syn_bbr/path.pd.nii.gz lh.slf1_avg16_syn_bbr/path.pd.nii.gz lh.slf2_avg16_syn_bbr/path.pd.nii.gz lh.slf3_avg16_syn_bbr/path.pd.nii.gz lh.uf_avg16_syn_bbr/path.pd.nii.gz mcp_avg16_syn_bbr/path.pd.nii.gz rh.af_avg16_syn_bbr/path.pd.nii.gz rh.ar_avg16_syn_bbr/path.pd.nii.gz rh.atr_avg16_syn_bbr/path.pd.nii.gz rh.cbd_avg16_syn_bbr/path.pd.nii.gz rh.cbv_avg16_syn_bbr/path.pd.nii.gz rh.cst_avg16_syn_bbr/path.pd.nii.gz rh.emc_avg16_syn_bbr/path.pd.nii.gz rh.fat_avg16_syn_bbr/path.pd.nii.gz rh.fx_avg16_syn_bbr/path.pd.nii.gz rh.ilf_avg16_syn_bbr/path.pd.nii.gz rh.mlf_avg16_syn_bbr/path.pd.nii.gz rh.or_avg16_syn_bbr/path.pd.nii.gz rh.slf1_avg16_syn_bbr/path.pd.nii.gz rh.slf2_avg16_syn_bbr/path.pd.nii.gz rh.slf3_avg16_syn_bbr/path.pd.nii.gz rh.uf_avg16_syn_bbr/path.pd.nii.gz --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/merged_avg16_syn_bbr.mgz --ctab /usr/local/freesurfer/7.3.2//FreeSurferColorLUT.txt --thresh .2 sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath Input files: acomm_avg16_syn_bbr/path.pd.nii.gz cc.bodyc_avg16_syn_bbr/path.pd.nii.gz cc.bodyp_avg16_syn_bbr/path.pd.nii.gz cc.bodypf_avg16_syn_bbr/path.pd.nii.gz cc.bodypm_avg16_syn_bbr/path.pd.nii.gz cc.bodyt_avg16_syn_bbr/path.pd.nii.gz cc.genu_avg16_syn_bbr/path.pd.nii.gz cc.rostrum_avg16_syn_bbr/path.pd.nii.gz cc.splenium_avg16_syn_bbr/path.pd.nii.gz lh.af_avg16_syn_bbr/path.pd.nii.gz lh.ar_avg16_syn_bbr/path.pd.nii.gz lh.atr_avg16_syn_bbr/path.pd.nii.gz lh.cbd_avg16_syn_bbr/path.pd.nii.gz lh.cbv_avg16_syn_bbr/path.pd.nii.gz lh.cst_avg16_syn_bbr/path.pd.nii.gz lh.emc_avg16_syn_bbr/path.pd.nii.gz lh.fat_avg16_syn_bbr/path.pd.nii.gz lh.fx_avg16_syn_bbr/path.pd.nii.gz lh.ilf_avg16_syn_bbr/path.pd.nii.gz lh.mlf_avg16_syn_bbr/path.pd.nii.gz lh.or_avg16_syn_bbr/path.pd.nii.gz lh.slf1_avg16_syn_bbr/path.pd.nii.gz lh.slf2_avg16_syn_bbr/path.pd.nii.gz lh.slf3_avg16_syn_bbr/path.pd.nii.gz lh.uf_avg16_syn_bbr/path.pd.nii.gz mcp_avg16_syn_bbr/path.pd.nii.gz rh.af_avg16_syn_bbr/path.pd.nii.gz rh.ar_avg16_syn_bbr/path.pd.nii.gz rh.atr_avg16_syn_bbr/path.pd.nii.gz rh.cbd_avg16_syn_bbr/path.pd.nii.gz rh.cbv_avg16_syn_bbr/path.pd.nii.gz rh.cst_avg16_syn_bbr/path.pd.nii.gz rh.emc_avg16_syn_bbr/path.pd.nii.gz rh.fat_avg16_syn_bbr/path.pd.nii.gz rh.fx_avg16_syn_bbr/path.pd.nii.gz rh.ilf_avg16_syn_bbr/path.pd.nii.gz rh.mlf_avg16_syn_bbr/path.pd.nii.gz rh.or_avg16_syn_bbr/path.pd.nii.gz rh.slf1_avg16_syn_bbr/path.pd.nii.gz rh.slf2_avg16_syn_bbr/path.pd.nii.gz rh.slf3_avg16_syn_bbr/path.pd.nii.gz rh.uf_avg16_syn_bbr/path.pd.nii.gz Output file: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/merged_avg16_syn_bbr.mgz Color table file: /autofs/vast/freesurfer/centos7_x86_64/7.3.2/FreeSurferColorLUT.txt Lower threshold for display: 0.200000 Merging volume 1 of 42... Threshold: 25.2 Name: Anterior Commissure Merging volume 2 of 42... Threshold: 12 Name: Corpus Callosum - Body - Central Merging volume 3 of 42... Threshold: 12 Name: Corpus Callosum - Body - Parietal Merging volume 4 of 42... Threshold: 13 Name: Corpus Callosum - Body - Prefrontal Merging volume 5 of 42... Threshold: 9.8 Name: Corpus Callosum - Body - Premotor Merging volume 6 of 42... Threshold: 9.2 Name: Corpus Callosum - Body - Temporal Merging volume 7 of 42... Threshold: 12.6 Name: Corpus Callosum - Genu Merging volume 8 of 42... Threshold: 15.8 Name: Corpus Callosum - Rostrum Merging volume 9 of 42... Threshold: 17.8 Name: Corpus Callosum - Splenium Merging volume 10 of 42... Threshold: 21.4 Name: Left Arcuate Fasciculus Merging volume 11 of 42... Threshold: 50 Name: Left Acoustic Radiation Merging volume 12 of 42... Threshold: 27 Name: Left Anterior Thalamic Radiation Merging volume 13 of 42... Threshold: 47 Name: Left Cingulum Bundle - Dorsal Merging volume 14 of 42... Threshold: 36.2 Name: Left Cingulum Bundle - Ventral Merging volume 15 of 42... Threshold: 16.6 Name: Left Corticospinal Tract Merging volume 16 of 42... Threshold: 26 Name: Left Extreme Capsule Merging volume 17 of 42... Threshold: 35.4 Name: Left Frontal Aslant Tract Merging volume 18 of 42... Threshold: 23.4 Name: Left Fornix Merging volume 19 of 42... Threshold: 18.8 Name: Left Inferior Longitudinal Fasciculus Merging volume 20 of 42... Threshold: 18.2 Name: Left Middle Longitudinal Fasciculus Merging volume 21 of 42... Threshold: 30 Name: Left Optic Radiation Merging volume 22 of 42... Threshold: 15.6 Name: Left Superior Longitudinal Fasciculus - I Merging volume 23 of 42... Threshold: 25.8 Name: Left Superior Longitudinal Fasciculus - II Merging volume 24 of 42... Threshold: 21.8 Name: Left Superior Longitudinal Fasciculus - III Merging volume 25 of 42... Threshold: 22.2 Name: Left Uncinate Fasciculus Merging volume 26 of 42... Threshold: 7.8 Name: Middle Cerebellar Peduncle Merging volume 27 of 42... Threshold: 21.6 Name: Right Arcuate Fasciculus Merging volume 28 of 42... Threshold: 44 Name: Right Acoustic Radiation Merging volume 29 of 42... Threshold: 44.2 Name: Right Anterior Thalamic Radiation Merging volume 30 of 42... Threshold: 55.4 Name: Right Cingulum Bundle - Dorsal Merging volume 31 of 42... Threshold: 23.4 Name: Right Cingulum Bundle - Ventral Merging volume 32 of 42... Threshold: 20 Name: Right Corticospinal Tract Merging volume 33 of 42... Threshold: 21.6 Name: Right Extreme Capsule Merging volume 34 of 42... Threshold: 22.4 Name: Right Frontal Aslant Tract Merging volume 35 of 42... Threshold: 22.6 Name: Right Fornix Merging volume 36 of 42... Threshold: 12.8 Name: Right Inferior Longitudinal Fasciculus Merging volume 37 of 42... Threshold: 18.2 Name: Right Middle Longitudinal Fasciculus Merging volume 38 of 42... Threshold: 21 Name: Right Optic Radiation Merging volume 39 of 42... Threshold: 22.8 Name: Right Superior Longitudinal Fasciculus - I Merging volume 40 of 42... Threshold: 23.2 Name: Right Superior Longitudinal Fasciculus - II Merging volume 41 of 42... Threshold: 25 Name: Right Superior Longitudinal Fasciculus - III Merging volume 42 of 42... Threshold: 21.8 Name: Right Uncinate Fasciculus Done in 6.277 sec. dmri_mergepaths done #------------------------------------- trac-paths finished without error at Fri Jul 14 17:18:58 EDT 2023 New invocation of trac-all Fri Jul 14 19:23:50 EDT 2023 /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/trac-all -path -c dmrirc.rerun Subject sub-BANDA002 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Actual FREESURFER_HOME /autofs/vast/freesurfer/centos7_x86_64/7.3.2 build-stamp.txt: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 erd37 atalanta.nmr.mgh.harvard.edu Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 131070 memorylocked unlimited maxproc 32768 maxlocks unlimited maxsignal 2062265 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 527971832 122336824 238488732 218860 167146276 403986432 Swap: 67108860 0 67108860 ######################################## Program versions: trac-all 7.3.2 mri_convert --all-info ProgramName: mri_convert ProgramArguments: mri_convert --all-info ProgramVersion: 7.3.2 TimeStamp: 2023/07/14-23:23:50-GMT BuildTime: Aug 4 2022 00:15:18 BuildStamp: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 User: erd37 Machine: atalanta.nmr.mgh.harvard.edu Platform: Linux PlatformVersion: 3.10.0-1160.92.1.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5 FLIRT version 6.0 bbregister 7.3.2 mri_cvs_register 7.3.2 ProgramName: dmri_motion ProgramArguments: /usr/local/freesurfer/7.3.2//bin/dmri_motion --all-info ProgramVersion: 7.3.2 TimeStamp: 2023/07/14-23:23:50-GMT BuildTime: Aug 4 2022 00:15:18 BuildStamp: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 User: erd37 Machine: atalanta.nmr.mgh.harvard.edu Platform: Linux PlatformVersion: 3.10.0-1160.92.1.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: dmri_train ProgramArguments: /usr/local/freesurfer/7.3.2//bin/dmri_train --all-info ProgramVersion: 7.3.2 TimeStamp: 2023/07/14-23:23:50-GMT BuildTime: Aug 4 2022 00:15:18 BuildStamp: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 User: erd37 Machine: atalanta.nmr.mgh.harvard.edu Platform: Linux PlatformVersion: 3.10.0-1160.92.1.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: dmri_paths ProgramArguments: /usr/local/freesurfer/7.3.2//bin/dmri_paths --all-info ProgramVersion: 7.3.2 TimeStamp: 2023/07/14-23:23:50-GMT BuildTime: Aug 4 2022 00:15:18 BuildStamp: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 User: erd37 Machine: atalanta.nmr.mgh.harvard.edu Platform: Linux PlatformVersion: 3.10.0-1160.92.1.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: dmri_pathstats ProgramArguments: /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --all-info ProgramVersion: 7.3.2 TimeStamp: 2023/07/14-23:23:50-GMT BuildTime: Aug 4 2022 00:15:18 BuildStamp: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 User: erd37 Machine: atalanta.nmr.mgh.harvard.edu Platform: Linux PlatformVersion: 3.10.0-1160.92.1.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: dmri_mergepaths ProgramArguments: /usr/local/freesurfer/7.3.2//bin/dmri_mergepaths --all-info ProgramVersion: 7.3.2 TimeStamp: 2023/07/14-23:23:50-GMT BuildTime: Aug 4 2022 00:15:18 BuildStamp: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 User: erd37 Machine: atalanta.nmr.mgh.harvard.edu Platform: Linux PlatformVersion: 3.10.0-1160.92.1.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: dmri_group ProgramArguments: /usr/local/freesurfer/7.3.2//bin/dmri_group --all-info ProgramVersion: 7.3.2 TimeStamp: 2023/07/14-23:23:50-GMT BuildTime: Aug 4 2022 00:15:18 BuildStamp: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 User: erd37 Machine: atalanta.nmr.mgh.harvard.edu Platform: Linux PlatformVersion: 3.10.0-1160.92.1.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5 INFO: current FREESURFER_HOME does not match that of previous processing. Current: /usr/local/freesurfer/7.3.2/ Previous: /usr/local/freesurfer/7.3.2 New invocation of trac-paths erd37 atalanta.nmr.mgh.harvard.edu Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse 7340032 kbytes descriptors 32768 memorylocked unlimited maxproc 2062265 maxlocks unlimited maxsignal 2062265 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 527971832 122339956 238485564 219072 167146312 403983052 Swap: 67108860 0 67108860 #------------------------------------- /usr/local/freesurfer/7.3.2//bin/trac-paths #------------------------------------- #@# DWI set selection Fri Jul 14 19:23:53 EDT 2023 ln -sf dwi.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/data.nii.gz ln -sf dwi.bvecs /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/bvecs ln -sf dwi.bvals /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/bvals #------------------------------------- #@# Path reconstruction Fri Jul 14 19:23:53 EDT 2023 rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr /usr/local/freesurfer/7.3.2//bin/dmri_paths --outdir /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr --dwi /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/data.nii.gz --grad /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/bvecs --bval /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/bvals --mask /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/aparc+aseg_mask.bbr.nii.gz --bpdir /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri.bedpostX --ntr 2 --fmin 0.05 --roi1 /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_end1_dil.nii.gz --roi2 /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_end2_dil.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2syn.lta --regnl /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/syn_warp.m3z --init /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/rh.atr_avg16_syn_bbr_cpts_7.txt --nprior /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnids_all --lprior /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsids_all --seg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/aparc+aseg+thalnuc.nii.gz --nb 200 --ns 7500 --nu 0 --nk 5 --sdp /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/rh.atr_avg16_syn_bbr_cpts_7_std.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_paths --outdir /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr --dwi /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/data.nii.gz --grad /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/bvecs --bval /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/bvals --mask /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/aparc+aseg_mask.bbr.nii.gz --bpdir /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri.bedpostX --ntr 2 --fmin 0.05 --roi1 /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_end1_dil.nii.gz --roi2 /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_end2_dil.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2syn.lta --regnl /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/syn_warp.m3z --init /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/rh.atr_avg16_syn_bbr_cpts_7.txt --nprior /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnids_all --lprior /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsids_all --seg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/aparc+aseg+thalnuc.nii.gz --nb 200 --ns 7500 --nu 0 --nk 5 --sdp /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/rh.atr_avg16_syn_bbr_cpts_7_std.txt sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Output directory: /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr DWIs: /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/data.nii.gz Gradients: /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/bvecs B-values: /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/bvals Mask: /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/aparc+aseg_mask.bbr.nii.gz BEDPOST directory: /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri.bedpostX Max number of tracts per voxel: 2 Tract volume fraction threshold: 0.05 Initial control point file: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/rh.atr_avg16_syn_bbr_cpts_7.txt End ROI 1: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_end1_dil.nii.gz End ROI 2: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_end2_dil.nii.gz Neighbor aseg prior: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnprior_all Neighbor aseg label ID list: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnids_all Neighbor aseg prior set: 14 Local aseg prior: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsprior_all Local aseg label ID list: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsids_all Local aseg prior set: 15 Segmentation map: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/aparc+aseg+thalnuc.nii.gz DWI-to-atlas affine registration: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dmri/xfms/diff2syn.lta DWI-to-atlas nonlinear registration: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dmri/xfms/syn_warp.m3z Number of burn-in samples: 200 Number of post-burn-in samples: 7500 Keep every: 5-th sample Update proposal every: 0-th sample Initial proposal SD file: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/rh.atr_avg16_syn_bbr_cpts_7_std.txt Loading DWIs from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/data.nii.gz Loading mask from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/aparc+aseg_mask.bbr.nii.gz Loading BEDPOST parameter samples from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri.bedpostX Loading b-values from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/bvals Loading gradients from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/bvecs INFO: Found 28 baseline images (b = 5) out of a total of 398 frames INFO: Found 422308 voxels in brain mask INFO: Resolution of DWI space relative to base space is (1, 1, 1) Loading atlas reference volume from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_end1_dil.nii.gz Loading affine registration from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dmri/xfms/diff2syn.lta LTA registration format detected FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -3.375, ref det = -3.375 Loading non-linear registration from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dmri/xfms/syn_warp.m3z setting orig areas to linear transform determinant scaled 1.00 Reading morph inverse Reading /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dmri/xfms/syn_warp.m3z.inv.x.mgz Reading /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dmri/xfms/syn_warp.m3z.inv.y.mgz Reading /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dmri/xfms/syn_warp.m3z.inv.z.mgz Loading segmentation map from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/aparc+aseg+thalnuc.nii.gz Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_end2_dil.nii.gz ERROR: Could not open /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/rh.atr_avg16_syn_bbr_cpts_7.txt Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux trac-paths exited with ERRORS at Fri Jul 14 19:24:49 EDT 2023 New invocation of trac-all Fri Jul 14 19:31:27 EDT 2023 /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/trac-all -path -c dmrirc.rerun Subject sub-BANDA002 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Actual FREESURFER_HOME /autofs/vast/freesurfer/centos7_x86_64/7.3.2 build-stamp.txt: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 erd37 atalanta.nmr.mgh.harvard.edu Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 131070 memorylocked unlimited maxproc 32768 maxlocks unlimited maxsignal 2062265 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 527971832 122330236 238511760 215484 167129836 403996296 Swap: 67108860 0 67108860 ######################################## Program versions: trac-all 7.3.2 mri_convert --all-info ProgramName: mri_convert ProgramArguments: mri_convert --all-info ProgramVersion: 7.3.2 TimeStamp: 2023/07/14-23:31:27-GMT BuildTime: Aug 4 2022 00:15:18 BuildStamp: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 User: erd37 Machine: atalanta.nmr.mgh.harvard.edu Platform: Linux PlatformVersion: 3.10.0-1160.92.1.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5 FLIRT version 6.0 bbregister 7.3.2 mri_cvs_register 7.3.2 ProgramName: dmri_motion ProgramArguments: /usr/local/freesurfer/7.3.2//bin/dmri_motion --all-info ProgramVersion: 7.3.2 TimeStamp: 2023/07/14-23:31:27-GMT BuildTime: Aug 4 2022 00:15:18 BuildStamp: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 User: erd37 Machine: atalanta.nmr.mgh.harvard.edu Platform: Linux PlatformVersion: 3.10.0-1160.92.1.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: dmri_train ProgramArguments: /usr/local/freesurfer/7.3.2//bin/dmri_train --all-info ProgramVersion: 7.3.2 TimeStamp: 2023/07/14-23:31:28-GMT BuildTime: Aug 4 2022 00:15:18 BuildStamp: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 User: erd37 Machine: atalanta.nmr.mgh.harvard.edu Platform: Linux PlatformVersion: 3.10.0-1160.92.1.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: dmri_paths ProgramArguments: /usr/local/freesurfer/7.3.2//bin/dmri_paths --all-info ProgramVersion: 7.3.2 TimeStamp: 2023/07/14-23:31:28-GMT BuildTime: Aug 4 2022 00:15:18 BuildStamp: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 User: erd37 Machine: atalanta.nmr.mgh.harvard.edu Platform: Linux PlatformVersion: 3.10.0-1160.92.1.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: dmri_pathstats ProgramArguments: /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --all-info ProgramVersion: 7.3.2 TimeStamp: 2023/07/14-23:31:28-GMT BuildTime: Aug 4 2022 00:15:18 BuildStamp: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 User: erd37 Machine: atalanta.nmr.mgh.harvard.edu Platform: Linux PlatformVersion: 3.10.0-1160.92.1.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: dmri_mergepaths ProgramArguments: /usr/local/freesurfer/7.3.2//bin/dmri_mergepaths --all-info ProgramVersion: 7.3.2 TimeStamp: 2023/07/14-23:31:28-GMT BuildTime: Aug 4 2022 00:15:18 BuildStamp: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 User: erd37 Machine: atalanta.nmr.mgh.harvard.edu Platform: Linux PlatformVersion: 3.10.0-1160.92.1.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: dmri_group ProgramArguments: /usr/local/freesurfer/7.3.2//bin/dmri_group --all-info ProgramVersion: 7.3.2 TimeStamp: 2023/07/14-23:31:28-GMT BuildTime: Aug 4 2022 00:15:18 BuildStamp: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 User: erd37 Machine: atalanta.nmr.mgh.harvard.edu Platform: Linux PlatformVersion: 3.10.0-1160.92.1.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5 INFO: current FREESURFER_HOME does not match that of previous processing. Current: /usr/local/freesurfer/7.3.2/ Previous: /usr/local/freesurfer/7.3.2 New invocation of trac-paths erd37 atalanta.nmr.mgh.harvard.edu Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse 7340032 kbytes descriptors 32768 memorylocked unlimited maxproc 2062265 maxlocks unlimited maxsignal 2062265 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 527971832 122328340 238515028 214036 167128464 403999664 Swap: 67108860 0 67108860 #------------------------------------- /usr/local/freesurfer/7.3.2//bin/trac-paths #------------------------------------- #@# DWI set selection Fri Jul 14 19:31:30 EDT 2023 ln -sf dwi.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/data.nii.gz ln -sf dwi.bvecs /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/bvecs ln -sf dwi.bvals /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/bvals #------------------------------------- #@# Path reconstruction Fri Jul 14 19:31:30 EDT 2023 rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr /usr/local/freesurfer/7.3.2//bin/dmri_paths --outdir /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr --dwi /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/data.nii.gz --grad /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/bvecs --bval /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/bvals --mask /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/aparc+aseg_mask.bbr.nii.gz --bpdir /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri.bedpostX --ntr 2 --fmin 0.05 --roi1 /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_end1_dil.nii.gz --roi2 /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_end2_dil.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2syn.lta --regnl /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/syn_warp.m3z --init /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/rh.atr_avg16_syn_bbr_cpts_4.txt --nprior /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnids_all --lprior /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsids_all --seg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/aparc+aseg+thalnuc.nii.gz --nb 200 --ns 7500 --nu 0 --nk 5 --sdp /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/rh.atr_avg16_syn_bbr_cpts_4_std.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_paths --outdir /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr --dwi /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/data.nii.gz --grad /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/bvecs --bval /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/bvals --mask /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/aparc+aseg_mask.bbr.nii.gz --bpdir /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri.bedpostX --ntr 2 --fmin 0.05 --roi1 /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_end1_dil.nii.gz --roi2 /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_end2_dil.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2syn.lta --regnl /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/syn_warp.m3z --init /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/rh.atr_avg16_syn_bbr_cpts_4.txt --nprior /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnids_all --lprior /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsids_all --seg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/aparc+aseg+thalnuc.nii.gz --nb 200 --ns 7500 --nu 0 --nk 5 --sdp /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/rh.atr_avg16_syn_bbr_cpts_4_std.txt sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Output directory: /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr DWIs: /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/data.nii.gz Gradients: /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/bvecs B-values: /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/bvals Mask: /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/aparc+aseg_mask.bbr.nii.gz BEDPOST directory: /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri.bedpostX Max number of tracts per voxel: 2 Tract volume fraction threshold: 0.05 Initial control point file: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/rh.atr_avg16_syn_bbr_cpts_4.txt End ROI 1: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_end1_dil.nii.gz End ROI 2: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_end2_dil.nii.gz Neighbor aseg prior: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnprior_all Neighbor aseg label ID list: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnids_all Neighbor aseg prior set: 14 Local aseg prior: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsprior_all Local aseg label ID list: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsids_all Local aseg prior set: 15 Segmentation map: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/aparc+aseg+thalnuc.nii.gz DWI-to-atlas affine registration: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dmri/xfms/diff2syn.lta DWI-to-atlas nonlinear registration: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dmri/xfms/syn_warp.m3z Number of burn-in samples: 200 Number of post-burn-in samples: 7500 Keep every: 5-th sample Update proposal every: 0-th sample Initial proposal SD file: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/rh.atr_avg16_syn_bbr_cpts_4_std.txt Loading DWIs from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/data.nii.gz Loading mask from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/aparc+aseg_mask.bbr.nii.gz Loading BEDPOST parameter samples from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri.bedpostX Loading b-values from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/bvals Loading gradients from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/bvecs INFO: Found 28 baseline images (b = 5) out of a total of 398 frames INFO: Found 422308 voxels in brain mask INFO: Resolution of DWI space relative to base space is (1, 1, 1) Loading atlas reference volume from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_end1_dil.nii.gz Loading affine registration from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dmri/xfms/diff2syn.lta LTA registration format detected FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -3.375, ref det = -3.375 Loading non-linear registration from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dmri/xfms/syn_warp.m3z setting orig areas to linear transform determinant scaled 1.00 Reading morph inverse Reading /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dmri/xfms/syn_warp.m3z.inv.x.mgz Reading /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dmri/xfms/syn_warp.m3z.inv.y.mgz Reading /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dmri/xfms/syn_warp.m3z.inv.z.mgz Loading segmentation map from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/aparc+aseg+thalnuc.nii.gz Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/rh.atr_avg16_syn_bbr_cpts_4.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/rh.atr_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/rh.atr_avg16_syn_bbr_cpts_4_std.txt Processing pathway 1 of 1... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr Done in 175.908 sec. dmri_paths done fslmaths /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/path.pd.nii.gz -thr 57.0000000 /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/tmp.nii.gz /usr/local/freesurfer/7.3.2//bin/dmri_trk2trk --in /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.atr.mean.trk --inref /usr/local/freesurfer/7.3.2//trctrain/hcp/MGH35_HCP_FA_template.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2syn.lta --regnl /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/syn_warp.m3z --inv --smooth --outasc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/path.ref.txt --outref /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/dtifit_FA.nii.gz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_trk2trk --in /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.atr.mean.trk --inref /usr/local/freesurfer/7.3.2//trctrain/hcp/MGH35_HCP_FA_template.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2syn.lta --regnl /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/syn_warp.m3z --inv --smooth --outasc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/path.ref.txt --outref /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/dtifit_FA.nii.gz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input .trk files: /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.atr.mean.trk Output text files: /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/path.ref.txt Input reference: /autofs/vast/freesurfer/centos7_x86_64/7.3.2/trctrain/hcp/MGH35_HCP_FA_template.nii.gz Output reference: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dmri/dtifit_FA.nii.gz Affine registration: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dmri/xfms/diff2syn.lta Nonlinear registration: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dmri/xfms/syn_warp.m3z Invert registration: 1 Fill gaps between points: 0 Smoothing streamlines Loading affine registration from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dmri/xfms/diff2syn.lta LTA registration format detected FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -3.375, ref det = -3.375 Loading non-linear registration from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dmri/xfms/syn_warp.m3z setting orig areas to linear transform determinant scaled 1.00 Reading morph inverse Reading /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dmri/xfms/syn_warp.m3z.inv.x.mgz Reading /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dmri/xfms/syn_warp.m3z.inv.y.mgz Reading /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dmri/xfms/syn_warp.m3z.inv.z.mgz Processing input file 1 of 1... Done in 0.006 sec. dmri_trk2trk done /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/dtifit --path rh.atr --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/dtifit --path rh.atr --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dmri/dtifit Pathway name: rh.atr Subject name: sub-BANDA002 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr... Done in 0.619 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 39098 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.mgz Dim: 128775 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.mgz Fri Jul 14 19:35:31 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/tmp.aIYMhf/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/tmp.aIYMhf/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/tmp.aIYMhf/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/tmp.aIYMhf/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/tmp.aIYMhf/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/tmp.aIYMhf/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/tmp.aIYMhf/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/tmp.aIYMhf/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/tmp.aIYMhf/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 1786 values in range Counting number of voxels in first frame Found 1785 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 1785 1785.000000 128775 1.386139 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA002 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: 10.71 42.13 35.98 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Found 1786 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA002 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 1786 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1786 nlabel points Performing mapping from target back to the source label 128775 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.label 8925 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.stats sub-BANDA002 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/rh.white... Using TH3 vertex volume calc Total face volume 270308 Total vertex volume 266908 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.label" number of vertices = 4842 total surface area = 3279 mm^2 total gray matter volume = 10888 mm^3 average cortical thickness = 2.852 mm +- 0.625 mm average integrated rectified mean curvature = 0.143 average integrated rectified Gaussian curvature = 0.039 folding index = 87 intrinsic curvature index = 7.8 /usr/local/freesurfer/7.3.2//bin/dmri_mergepaths --indir /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath --in acomm_avg16_syn_bbr/path.pd.nii.gz cc.bodyc_avg16_syn_bbr/path.pd.nii.gz cc.bodyp_avg16_syn_bbr/path.pd.nii.gz cc.bodypf_avg16_syn_bbr/path.pd.nii.gz cc.bodypm_avg16_syn_bbr/path.pd.nii.gz cc.bodyt_avg16_syn_bbr/path.pd.nii.gz cc.genu_avg16_syn_bbr/path.pd.nii.gz cc.rostrum_avg16_syn_bbr/path.pd.nii.gz cc.splenium_avg16_syn_bbr/path.pd.nii.gz lh.af_avg16_syn_bbr/path.pd.nii.gz lh.ar_avg16_syn_bbr/path.pd.nii.gz lh.atr_avg16_syn_bbr/path.pd.nii.gz lh.cbd_avg16_syn_bbr/path.pd.nii.gz lh.cbv_avg16_syn_bbr/path.pd.nii.gz lh.cst_avg16_syn_bbr/path.pd.nii.gz lh.emc_avg16_syn_bbr/path.pd.nii.gz lh.fat_avg16_syn_bbr/path.pd.nii.gz lh.fx_avg16_syn_bbr/path.pd.nii.gz lh.ilf_avg16_syn_bbr/path.pd.nii.gz lh.mlf_avg16_syn_bbr/path.pd.nii.gz lh.or_avg16_syn_bbr/path.pd.nii.gz lh.slf1_avg16_syn_bbr/path.pd.nii.gz lh.slf2_avg16_syn_bbr/path.pd.nii.gz lh.slf3_avg16_syn_bbr/path.pd.nii.gz lh.uf_avg16_syn_bbr/path.pd.nii.gz mcp_avg16_syn_bbr/path.pd.nii.gz rh.af_avg16_syn_bbr/path.pd.nii.gz rh.ar_avg16_syn_bbr/path.pd.nii.gz rh.atr_avg16_syn_bbr/path.pd.nii.gz rh.cbd_avg16_syn_bbr/path.pd.nii.gz rh.cbv_avg16_syn_bbr/path.pd.nii.gz rh.cst_avg16_syn_bbr/path.pd.nii.gz rh.emc_avg16_syn_bbr/path.pd.nii.gz rh.fat_avg16_syn_bbr/path.pd.nii.gz rh.fx_avg16_syn_bbr/path.pd.nii.gz rh.ilf_avg16_syn_bbr/path.pd.nii.gz rh.mlf_avg16_syn_bbr/path.pd.nii.gz rh.or_avg16_syn_bbr/path.pd.nii.gz rh.slf1_avg16_syn_bbr/path.pd.nii.gz rh.slf2_avg16_syn_bbr/path.pd.nii.gz rh.slf3_avg16_syn_bbr/path.pd.nii.gz rh.uf_avg16_syn_bbr/path.pd.nii.gz --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/merged_avg16_syn_bbr.mgz --ctab /usr/local/freesurfer/7.3.2//FreeSurferColorLUT.txt --thresh .2 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_mergepaths --indir /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath --in acomm_avg16_syn_bbr/path.pd.nii.gz cc.bodyc_avg16_syn_bbr/path.pd.nii.gz cc.bodyp_avg16_syn_bbr/path.pd.nii.gz cc.bodypf_avg16_syn_bbr/path.pd.nii.gz cc.bodypm_avg16_syn_bbr/path.pd.nii.gz cc.bodyt_avg16_syn_bbr/path.pd.nii.gz cc.genu_avg16_syn_bbr/path.pd.nii.gz cc.rostrum_avg16_syn_bbr/path.pd.nii.gz cc.splenium_avg16_syn_bbr/path.pd.nii.gz lh.af_avg16_syn_bbr/path.pd.nii.gz lh.ar_avg16_syn_bbr/path.pd.nii.gz lh.atr_avg16_syn_bbr/path.pd.nii.gz lh.cbd_avg16_syn_bbr/path.pd.nii.gz lh.cbv_avg16_syn_bbr/path.pd.nii.gz lh.cst_avg16_syn_bbr/path.pd.nii.gz lh.emc_avg16_syn_bbr/path.pd.nii.gz lh.fat_avg16_syn_bbr/path.pd.nii.gz lh.fx_avg16_syn_bbr/path.pd.nii.gz lh.ilf_avg16_syn_bbr/path.pd.nii.gz lh.mlf_avg16_syn_bbr/path.pd.nii.gz lh.or_avg16_syn_bbr/path.pd.nii.gz lh.slf1_avg16_syn_bbr/path.pd.nii.gz lh.slf2_avg16_syn_bbr/path.pd.nii.gz lh.slf3_avg16_syn_bbr/path.pd.nii.gz lh.uf_avg16_syn_bbr/path.pd.nii.gz mcp_avg16_syn_bbr/path.pd.nii.gz rh.af_avg16_syn_bbr/path.pd.nii.gz rh.ar_avg16_syn_bbr/path.pd.nii.gz rh.atr_avg16_syn_bbr/path.pd.nii.gz rh.cbd_avg16_syn_bbr/path.pd.nii.gz rh.cbv_avg16_syn_bbr/path.pd.nii.gz rh.cst_avg16_syn_bbr/path.pd.nii.gz rh.emc_avg16_syn_bbr/path.pd.nii.gz rh.fat_avg16_syn_bbr/path.pd.nii.gz rh.fx_avg16_syn_bbr/path.pd.nii.gz rh.ilf_avg16_syn_bbr/path.pd.nii.gz rh.mlf_avg16_syn_bbr/path.pd.nii.gz rh.or_avg16_syn_bbr/path.pd.nii.gz rh.slf1_avg16_syn_bbr/path.pd.nii.gz rh.slf2_avg16_syn_bbr/path.pd.nii.gz rh.slf3_avg16_syn_bbr/path.pd.nii.gz rh.uf_avg16_syn_bbr/path.pd.nii.gz --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/merged_avg16_syn_bbr.mgz --ctab /usr/local/freesurfer/7.3.2//FreeSurferColorLUT.txt --thresh .2 sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath Input files: acomm_avg16_syn_bbr/path.pd.nii.gz cc.bodyc_avg16_syn_bbr/path.pd.nii.gz cc.bodyp_avg16_syn_bbr/path.pd.nii.gz cc.bodypf_avg16_syn_bbr/path.pd.nii.gz cc.bodypm_avg16_syn_bbr/path.pd.nii.gz cc.bodyt_avg16_syn_bbr/path.pd.nii.gz cc.genu_avg16_syn_bbr/path.pd.nii.gz cc.rostrum_avg16_syn_bbr/path.pd.nii.gz cc.splenium_avg16_syn_bbr/path.pd.nii.gz lh.af_avg16_syn_bbr/path.pd.nii.gz lh.ar_avg16_syn_bbr/path.pd.nii.gz lh.atr_avg16_syn_bbr/path.pd.nii.gz lh.cbd_avg16_syn_bbr/path.pd.nii.gz lh.cbv_avg16_syn_bbr/path.pd.nii.gz lh.cst_avg16_syn_bbr/path.pd.nii.gz lh.emc_avg16_syn_bbr/path.pd.nii.gz lh.fat_avg16_syn_bbr/path.pd.nii.gz lh.fx_avg16_syn_bbr/path.pd.nii.gz lh.ilf_avg16_syn_bbr/path.pd.nii.gz lh.mlf_avg16_syn_bbr/path.pd.nii.gz lh.or_avg16_syn_bbr/path.pd.nii.gz lh.slf1_avg16_syn_bbr/path.pd.nii.gz lh.slf2_avg16_syn_bbr/path.pd.nii.gz lh.slf3_avg16_syn_bbr/path.pd.nii.gz lh.uf_avg16_syn_bbr/path.pd.nii.gz mcp_avg16_syn_bbr/path.pd.nii.gz rh.af_avg16_syn_bbr/path.pd.nii.gz rh.ar_avg16_syn_bbr/path.pd.nii.gz rh.atr_avg16_syn_bbr/path.pd.nii.gz rh.cbd_avg16_syn_bbr/path.pd.nii.gz rh.cbv_avg16_syn_bbr/path.pd.nii.gz rh.cst_avg16_syn_bbr/path.pd.nii.gz rh.emc_avg16_syn_bbr/path.pd.nii.gz rh.fat_avg16_syn_bbr/path.pd.nii.gz rh.fx_avg16_syn_bbr/path.pd.nii.gz rh.ilf_avg16_syn_bbr/path.pd.nii.gz rh.mlf_avg16_syn_bbr/path.pd.nii.gz rh.or_avg16_syn_bbr/path.pd.nii.gz rh.slf1_avg16_syn_bbr/path.pd.nii.gz rh.slf2_avg16_syn_bbr/path.pd.nii.gz rh.slf3_avg16_syn_bbr/path.pd.nii.gz rh.uf_avg16_syn_bbr/path.pd.nii.gz Output file: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/merged_avg16_syn_bbr.mgz Color table file: /autofs/vast/freesurfer/centos7_x86_64/7.3.2/FreeSurferColorLUT.txt Lower threshold for display: 0.200000 Merging volume 1 of 42... Threshold: 25.2 Name: Anterior Commissure Merging volume 2 of 42... Threshold: 12 Name: Corpus Callosum - Body - Central Merging volume 3 of 42... Threshold: 12 Name: Corpus Callosum - Body - Parietal Merging volume 4 of 42... Threshold: 13 Name: Corpus Callosum - Body - Prefrontal Merging volume 5 of 42... Threshold: 9.8 Name: Corpus Callosum - Body - Premotor Merging volume 6 of 42... Threshold: 9.2 Name: Corpus Callosum - Body - Temporal Merging volume 7 of 42... Threshold: 12.6 Name: Corpus Callosum - Genu Merging volume 8 of 42... Threshold: 15.8 Name: Corpus Callosum - Rostrum Merging volume 9 of 42... Threshold: 17.8 Name: Corpus Callosum - Splenium Merging volume 10 of 42... Threshold: 21.4 Name: Left Arcuate Fasciculus Merging volume 11 of 42... Threshold: 50 Name: Left Acoustic Radiation Merging volume 12 of 42... Threshold: 27 Name: Left Anterior Thalamic Radiation Merging volume 13 of 42... Threshold: 47 Name: Left Cingulum Bundle - Dorsal Merging volume 14 of 42... Threshold: 36.2 Name: Left Cingulum Bundle - Ventral Merging volume 15 of 42... Threshold: 16.6 Name: Left Corticospinal Tract Merging volume 16 of 42... Threshold: 26 Name: Left Extreme Capsule Merging volume 17 of 42... Threshold: 35.4 Name: Left Frontal Aslant Tract Merging volume 18 of 42... Threshold: 23.4 Name: Left Fornix Merging volume 19 of 42... Threshold: 18.8 Name: Left Inferior Longitudinal Fasciculus Merging volume 20 of 42... Threshold: 18.2 Name: Left Middle Longitudinal Fasciculus Merging volume 21 of 42... Threshold: 30 Name: Left Optic Radiation Merging volume 22 of 42... Threshold: 15.6 Name: Left Superior Longitudinal Fasciculus - I Merging volume 23 of 42... Threshold: 25.8 Name: Left Superior Longitudinal Fasciculus - II Merging volume 24 of 42... Threshold: 21.8 Name: Left Superior Longitudinal Fasciculus - III Merging volume 25 of 42... Threshold: 22.2 Name: Left Uncinate Fasciculus Merging volume 26 of 42... Threshold: 7.8 Name: Middle Cerebellar Peduncle Merging volume 27 of 42... Threshold: 21.6 Name: Right Arcuate Fasciculus Merging volume 28 of 42... Threshold: 44 Name: Right Acoustic Radiation Merging volume 29 of 42... Threshold: 39.4 Name: Right Anterior Thalamic Radiation Merging volume 30 of 42... Threshold: 55.4 Name: Right Cingulum Bundle - Dorsal Merging volume 31 of 42... Threshold: 23.4 Name: Right Cingulum Bundle - Ventral Merging volume 32 of 42... Threshold: 20 Name: Right Corticospinal Tract Merging volume 33 of 42... Threshold: 21.6 Name: Right Extreme Capsule Merging volume 34 of 42... Threshold: 22.4 Name: Right Frontal Aslant Tract Merging volume 35 of 42... Threshold: 22.6 Name: Right Fornix Merging volume 36 of 42... Threshold: 12.8 Name: Right Inferior Longitudinal Fasciculus Merging volume 37 of 42... Threshold: 18.2 Name: Right Middle Longitudinal Fasciculus Merging volume 38 of 42... Threshold: 21 Name: Right Optic Radiation Merging volume 39 of 42... Threshold: 22.8 Name: Right Superior Longitudinal Fasciculus - I Merging volume 40 of 42... Threshold: 23.2 Name: Right Superior Longitudinal Fasciculus - II Merging volume 41 of 42... Threshold: 25 Name: Right Superior Longitudinal Fasciculus - III Merging volume 42 of 42... Threshold: 21.8 Name: Right Uncinate Fasciculus Done in 6.39 sec. dmri_mergepaths done #------------------------------------- trac-paths finished without error at Fri Jul 14 19:35:47 EDT 2023 New invocation of trac-all Fri Jul 14 20:03:36 EDT 2023 /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/trac-all -path -c dmrirc.rerun Subject sub-BANDA002 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Actual FREESURFER_HOME /autofs/vast/freesurfer/centos7_x86_64/7.3.2 build-stamp.txt: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 erd37 atalanta.nmr.mgh.harvard.edu Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 131070 memorylocked unlimited maxproc 32768 maxlocks unlimited maxsignal 2062265 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 527971832 125997148 234822020 214760 167152664 400330132 Swap: 67108860 0 67108860 ######################################## Program versions: trac-all 7.3.2 mri_convert --all-info ProgramName: mri_convert ProgramArguments: mri_convert --all-info ProgramVersion: 7.3.2 TimeStamp: 2023/07/15-00:03:36-GMT BuildTime: Aug 4 2022 00:15:18 BuildStamp: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 User: erd37 Machine: atalanta.nmr.mgh.harvard.edu Platform: Linux PlatformVersion: 3.10.0-1160.92.1.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5 FLIRT version 6.0 bbregister 7.3.2 mri_cvs_register 7.3.2 ProgramName: dmri_motion ProgramArguments: /usr/local/freesurfer/7.3.2//bin/dmri_motion --all-info ProgramVersion: 7.3.2 TimeStamp: 2023/07/15-00:03:36-GMT BuildTime: Aug 4 2022 00:15:18 BuildStamp: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 User: erd37 Machine: atalanta.nmr.mgh.harvard.edu Platform: Linux PlatformVersion: 3.10.0-1160.92.1.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: dmri_train ProgramArguments: /usr/local/freesurfer/7.3.2//bin/dmri_train --all-info ProgramVersion: 7.3.2 TimeStamp: 2023/07/15-00:03:36-GMT BuildTime: Aug 4 2022 00:15:18 BuildStamp: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 User: erd37 Machine: atalanta.nmr.mgh.harvard.edu Platform: Linux PlatformVersion: 3.10.0-1160.92.1.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: dmri_paths ProgramArguments: /usr/local/freesurfer/7.3.2//bin/dmri_paths --all-info ProgramVersion: 7.3.2 TimeStamp: 2023/07/15-00:03:36-GMT BuildTime: Aug 4 2022 00:15:18 BuildStamp: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 User: erd37 Machine: atalanta.nmr.mgh.harvard.edu Platform: Linux PlatformVersion: 3.10.0-1160.92.1.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: dmri_pathstats ProgramArguments: /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --all-info ProgramVersion: 7.3.2 TimeStamp: 2023/07/15-00:03:36-GMT BuildTime: Aug 4 2022 00:15:18 BuildStamp: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 User: erd37 Machine: atalanta.nmr.mgh.harvard.edu Platform: Linux PlatformVersion: 3.10.0-1160.92.1.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: dmri_mergepaths ProgramArguments: /usr/local/freesurfer/7.3.2//bin/dmri_mergepaths --all-info ProgramVersion: 7.3.2 TimeStamp: 2023/07/15-00:03:36-GMT BuildTime: Aug 4 2022 00:15:18 BuildStamp: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 User: erd37 Machine: atalanta.nmr.mgh.harvard.edu Platform: Linux PlatformVersion: 3.10.0-1160.92.1.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: dmri_group ProgramArguments: /usr/local/freesurfer/7.3.2//bin/dmri_group --all-info ProgramVersion: 7.3.2 TimeStamp: 2023/07/15-00:03:36-GMT BuildTime: Aug 4 2022 00:15:18 BuildStamp: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 User: erd37 Machine: atalanta.nmr.mgh.harvard.edu Platform: Linux PlatformVersion: 3.10.0-1160.92.1.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5 INFO: current FREESURFER_HOME does not match that of previous processing. Current: /usr/local/freesurfer/7.3.2/ Previous: /usr/local/freesurfer/7.3.2 New invocation of trac-paths erd37 atalanta.nmr.mgh.harvard.edu Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse 7340032 kbytes descriptors 32768 memorylocked unlimited maxproc 2062265 maxlocks unlimited maxsignal 2062265 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 527971832 125992156 234826988 214760 167152688 400335124 Swap: 67108860 0 67108860 #------------------------------------- /usr/local/freesurfer/7.3.2//bin/trac-paths #------------------------------------- #@# DWI set selection Fri Jul 14 20:03:39 EDT 2023 ln -sf dwi.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/data.nii.gz ln -sf dwi.bvecs /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/bvecs ln -sf dwi.bvals /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/bvals #------------------------------------- #@# Path reconstruction Fri Jul 14 20:03:39 EDT 2023 rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr /usr/local/freesurfer/7.3.2//bin/dmri_paths --outdir /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr --dwi /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/data.nii.gz --grad /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/bvecs --bval /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/bvals --mask /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/aparc+aseg_mask.bbr.nii.gz --bpdir /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri.bedpostX --ntr 2 --fmin 0.05 --roi1 /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_end1_dil.nii.gz --roi2 /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_end2_dil.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2syn.lta --regnl /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/syn_warp.m3z --init /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/lh.fat_avg16_syn_bbr_cpts_5.txt --nprior /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnids_all --lprior /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsids_all --seg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/aparc+aseg+thalnuc.nii.gz --nb 200 --ns 7500 --nu 0 --nk 5 --sdp /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/lh.fat_avg16_syn_bbr_cpts_5_std.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_paths --outdir /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr --dwi /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/data.nii.gz --grad /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/bvecs --bval /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/bvals --mask /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/aparc+aseg_mask.bbr.nii.gz --bpdir /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri.bedpostX --ntr 2 --fmin 0.05 --roi1 /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_end1_dil.nii.gz --roi2 /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_end2_dil.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2syn.lta --regnl /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/syn_warp.m3z --init /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/lh.fat_avg16_syn_bbr_cpts_5.txt --nprior /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnids_all --lprior /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsids_all --seg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/syn/aparc+aseg+thalnuc.nii.gz --nb 200 --ns 7500 --nu 0 --nk 5 --sdp /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/lh.fat_avg16_syn_bbr_cpts_5_std.txt sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Output directory: /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr DWIs: /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/data.nii.gz Gradients: /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/bvecs B-values: /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/bvals Mask: /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/aparc+aseg_mask.bbr.nii.gz BEDPOST directory: /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri.bedpostX Max number of tracts per voxel: 2 Tract volume fraction threshold: 0.05 Initial control point file: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/lh.fat_avg16_syn_bbr_cpts_5.txt End ROI 1: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_end1_dil.nii.gz End ROI 2: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_end2_dil.nii.gz Neighbor aseg prior: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnprior_all Neighbor aseg label ID list: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnids_all Neighbor aseg prior set: 14 Local aseg prior: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsprior_all Local aseg label ID list: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsids_all Local aseg prior set: 15 Segmentation map: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/aparc+aseg+thalnuc.nii.gz DWI-to-atlas affine registration: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dmri/xfms/diff2syn.lta DWI-to-atlas nonlinear registration: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dmri/xfms/syn_warp.m3z Number of burn-in samples: 200 Number of post-burn-in samples: 7500 Keep every: 5-th sample Update proposal every: 0-th sample Initial proposal SD file: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/lh.fat_avg16_syn_bbr_cpts_5_std.txt Loading DWIs from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/data.nii.gz Loading mask from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dlabel/diff/aparc+aseg_mask.bbr.nii.gz Loading BEDPOST parameter samples from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri.bedpostX Loading b-values from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/bvals Loading gradients from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/bvecs INFO: Found 28 baseline images (b = 5) out of a total of 398 frames INFO: Found 422308 voxels in brain mask INFO: Resolution of DWI space relative to base space is (1, 1, 1) Loading atlas reference volume from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_end1_dil.nii.gz Loading affine registration from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dmri/xfms/diff2syn.lta LTA registration format detected FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -3.375, ref det = -3.375 Loading non-linear registration from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dmri/xfms/syn_warp.m3z setting orig areas to linear transform determinant scaled 1.00 Reading morph inverse Reading /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dmri/xfms/syn_warp.m3z.inv.x.mgz Reading /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dmri/xfms/syn_warp.m3z.inv.y.mgz Reading /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dmri/xfms/syn_warp.m3z.inv.z.mgz Loading segmentation map from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/aparc+aseg+thalnuc.nii.gz Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/lh.fat_avg16_syn_bbr_cpts_5.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/syn/lh.fat_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dlabel/diff/lh.fat_avg16_syn_bbr_cpts_5_std.txt Processing pathway 1 of 1... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr Done in 199.413 sec. dmri_paths done fslmaths /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/path.pd.nii.gz -thr 47.2000000 /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/tmp.nii.gz /usr/local/freesurfer/7.3.2//bin/dmri_trk2trk --in /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.fat.mean.trk --inref /usr/local/freesurfer/7.3.2//trctrain/hcp/MGH35_HCP_FA_template.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2syn.lta --regnl /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/syn_warp.m3z --inv --smooth --outasc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/path.ref.txt --outref /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/dtifit_FA.nii.gz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_trk2trk --in /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.fat.mean.trk --inref /usr/local/freesurfer/7.3.2//trctrain/hcp/MGH35_HCP_FA_template.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2syn.lta --regnl /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/syn_warp.m3z --inv --smooth --outasc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/path.ref.txt --outref /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/dtifit_FA.nii.gz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input .trk files: /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.fat.mean.trk Output text files: /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/path.ref.txt Input reference: /autofs/vast/freesurfer/centos7_x86_64/7.3.2/trctrain/hcp/MGH35_HCP_FA_template.nii.gz Output reference: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dmri/dtifit_FA.nii.gz Affine registration: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dmri/xfms/diff2syn.lta Nonlinear registration: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dmri/xfms/syn_warp.m3z Invert registration: 1 Fill gaps between points: 0 Smoothing streamlines Loading affine registration from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dmri/xfms/diff2syn.lta LTA registration format detected FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -3.375, ref det = -3.375 Loading non-linear registration from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dmri/xfms/syn_warp.m3z setting orig areas to linear transform determinant scaled 1.00 Reading morph inverse Reading /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dmri/xfms/syn_warp.m3z.inv.x.mgz Reading /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dmri/xfms/syn_warp.m3z.inv.y.mgz Reading /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dmri/xfms/syn_warp.m3z.inv.z.mgz Processing input file 1 of 1... Done in 0.006 sec. dmri_trk2trk done /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/dtifit --path lh.fat --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/dtifit --path lh.fat --subj sub-BANDA002 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dmri/dtifit Pathway name: lh.fat Subject name: sub-BANDA002 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr... Done in 0.422 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 38988 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.mgz Dim: 129240 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.mgz Fri Jul 14 20:08:00 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/tmp.ikNSqh/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/tmp.ikNSqh/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/tmp.ikNSqh/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/tmp.ikNSqh/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/tmp.ikNSqh/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/tmp.ikNSqh/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/tmp.ikNSqh/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/tmp.ikNSqh/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/tmp.ikNSqh/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2001 values in range Counting number of voxels in first frame Found 2000 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 2000 2000.000000 129240 1.547509 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA002 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: -15.95 -6.48 52.64 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Found 2001 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA002 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2001 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2001 nlabel points Performing mapping from target back to the source label 129240 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.label 8325 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.stats sub-BANDA002 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white... Using TH3 vertex volume calc Total face volume 278288 Total vertex volume 274927 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.label" number of vertices = 5212 total surface area = 3505 mm^2 total gray matter volume = 13697 mm^3 average cortical thickness = 3.285 mm +- 0.585 mm average integrated rectified mean curvature = 0.124 average integrated rectified Gaussian curvature = 0.027 folding index = 62 intrinsic curvature index = 5.5 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA002 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA002 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA002 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99607 0.04862 0.07402 -1.25778; -0.04743 -0.41290 0.90954 -26.01758; 0.07479 -0.90948 -0.40897 -7.47664; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 38988 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.mgz Dim: 129240 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.mgz Fri Jul 14 20:08:11 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/tmp.yWfgla/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/tmp.yWfgla/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/tmp.yWfgla/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/tmp.yWfgla/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/tmp.yWfgla/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/tmp.yWfgla/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/tmp.yWfgla/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/tmp.yWfgla/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/tmp.yWfgla/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995812, -0.0531134, -0.0744134) j_ras = (-0.0778475, 0.919405, 0.385532) k_ras = (-0.0479391, -0.38971, 0.919689) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 1675 values in range Counting number of voxels in first frame Found 1674 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 1674 1674.000000 129240 1.295265 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA002 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: -40.84 1.34 21.29 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Found 1675 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA002 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA002 trgsubject = sub-BANDA002 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 1675 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1675 nlabel points Performing mapping from target back to the source label 129240 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.label 6754 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.stats sub-BANDA002 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA002/surf/lh.white... Using TH3 vertex volume calc Total face volume 278288 Total vertex volume 274927 (mask=0) atlas_icv (eTIV) = 1480361 mm^3 (det: 1.315966 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.label" number of vertices = 3631 total surface area = 2439 mm^2 total gray matter volume = 8208 mm^3 average cortical thickness = 3.073 mm +- 0.506 mm average integrated rectified mean curvature = 0.123 average integrated rectified Gaussian curvature = 0.024 folding index = 40 intrinsic curvature index = 3.6 /usr/local/freesurfer/7.3.2//bin/dmri_mergepaths --indir /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath --in acomm_avg16_syn_bbr/path.pd.nii.gz cc.bodyc_avg16_syn_bbr/path.pd.nii.gz cc.bodyp_avg16_syn_bbr/path.pd.nii.gz cc.bodypf_avg16_syn_bbr/path.pd.nii.gz cc.bodypm_avg16_syn_bbr/path.pd.nii.gz cc.bodyt_avg16_syn_bbr/path.pd.nii.gz cc.genu_avg16_syn_bbr/path.pd.nii.gz cc.rostrum_avg16_syn_bbr/path.pd.nii.gz cc.splenium_avg16_syn_bbr/path.pd.nii.gz lh.af_avg16_syn_bbr/path.pd.nii.gz lh.ar_avg16_syn_bbr/path.pd.nii.gz lh.atr_avg16_syn_bbr/path.pd.nii.gz lh.cbd_avg16_syn_bbr/path.pd.nii.gz lh.cbv_avg16_syn_bbr/path.pd.nii.gz lh.cst_avg16_syn_bbr/path.pd.nii.gz lh.emc_avg16_syn_bbr/path.pd.nii.gz lh.fat_avg16_syn_bbr/path.pd.nii.gz lh.fx_avg16_syn_bbr/path.pd.nii.gz lh.ilf_avg16_syn_bbr/path.pd.nii.gz lh.mlf_avg16_syn_bbr/path.pd.nii.gz lh.or_avg16_syn_bbr/path.pd.nii.gz lh.slf1_avg16_syn_bbr/path.pd.nii.gz lh.slf2_avg16_syn_bbr/path.pd.nii.gz lh.slf3_avg16_syn_bbr/path.pd.nii.gz lh.uf_avg16_syn_bbr/path.pd.nii.gz mcp_avg16_syn_bbr/path.pd.nii.gz rh.af_avg16_syn_bbr/path.pd.nii.gz rh.ar_avg16_syn_bbr/path.pd.nii.gz rh.atr_avg16_syn_bbr/path.pd.nii.gz rh.cbd_avg16_syn_bbr/path.pd.nii.gz rh.cbv_avg16_syn_bbr/path.pd.nii.gz rh.cst_avg16_syn_bbr/path.pd.nii.gz rh.emc_avg16_syn_bbr/path.pd.nii.gz rh.fat_avg16_syn_bbr/path.pd.nii.gz rh.fx_avg16_syn_bbr/path.pd.nii.gz rh.ilf_avg16_syn_bbr/path.pd.nii.gz rh.mlf_avg16_syn_bbr/path.pd.nii.gz rh.or_avg16_syn_bbr/path.pd.nii.gz rh.slf1_avg16_syn_bbr/path.pd.nii.gz rh.slf2_avg16_syn_bbr/path.pd.nii.gz rh.slf3_avg16_syn_bbr/path.pd.nii.gz rh.uf_avg16_syn_bbr/path.pd.nii.gz --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/merged_avg16_syn_bbr.mgz --ctab /usr/local/freesurfer/7.3.2//FreeSurferColorLUT.txt --thresh .2 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_mergepaths --indir /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath --in acomm_avg16_syn_bbr/path.pd.nii.gz cc.bodyc_avg16_syn_bbr/path.pd.nii.gz cc.bodyp_avg16_syn_bbr/path.pd.nii.gz cc.bodypf_avg16_syn_bbr/path.pd.nii.gz cc.bodypm_avg16_syn_bbr/path.pd.nii.gz cc.bodyt_avg16_syn_bbr/path.pd.nii.gz cc.genu_avg16_syn_bbr/path.pd.nii.gz cc.rostrum_avg16_syn_bbr/path.pd.nii.gz cc.splenium_avg16_syn_bbr/path.pd.nii.gz lh.af_avg16_syn_bbr/path.pd.nii.gz lh.ar_avg16_syn_bbr/path.pd.nii.gz lh.atr_avg16_syn_bbr/path.pd.nii.gz lh.cbd_avg16_syn_bbr/path.pd.nii.gz lh.cbv_avg16_syn_bbr/path.pd.nii.gz lh.cst_avg16_syn_bbr/path.pd.nii.gz lh.emc_avg16_syn_bbr/path.pd.nii.gz lh.fat_avg16_syn_bbr/path.pd.nii.gz lh.fx_avg16_syn_bbr/path.pd.nii.gz lh.ilf_avg16_syn_bbr/path.pd.nii.gz lh.mlf_avg16_syn_bbr/path.pd.nii.gz lh.or_avg16_syn_bbr/path.pd.nii.gz lh.slf1_avg16_syn_bbr/path.pd.nii.gz lh.slf2_avg16_syn_bbr/path.pd.nii.gz lh.slf3_avg16_syn_bbr/path.pd.nii.gz lh.uf_avg16_syn_bbr/path.pd.nii.gz mcp_avg16_syn_bbr/path.pd.nii.gz rh.af_avg16_syn_bbr/path.pd.nii.gz rh.ar_avg16_syn_bbr/path.pd.nii.gz rh.atr_avg16_syn_bbr/path.pd.nii.gz rh.cbd_avg16_syn_bbr/path.pd.nii.gz rh.cbv_avg16_syn_bbr/path.pd.nii.gz rh.cst_avg16_syn_bbr/path.pd.nii.gz rh.emc_avg16_syn_bbr/path.pd.nii.gz rh.fat_avg16_syn_bbr/path.pd.nii.gz rh.fx_avg16_syn_bbr/path.pd.nii.gz rh.ilf_avg16_syn_bbr/path.pd.nii.gz rh.mlf_avg16_syn_bbr/path.pd.nii.gz rh.or_avg16_syn_bbr/path.pd.nii.gz rh.slf1_avg16_syn_bbr/path.pd.nii.gz rh.slf2_avg16_syn_bbr/path.pd.nii.gz rh.slf3_avg16_syn_bbr/path.pd.nii.gz rh.uf_avg16_syn_bbr/path.pd.nii.gz --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA002/dpath/merged_avg16_syn_bbr.mgz --ctab /usr/local/freesurfer/7.3.2//FreeSurferColorLUT.txt --thresh .2 sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath Input files: acomm_avg16_syn_bbr/path.pd.nii.gz cc.bodyc_avg16_syn_bbr/path.pd.nii.gz cc.bodyp_avg16_syn_bbr/path.pd.nii.gz cc.bodypf_avg16_syn_bbr/path.pd.nii.gz cc.bodypm_avg16_syn_bbr/path.pd.nii.gz cc.bodyt_avg16_syn_bbr/path.pd.nii.gz cc.genu_avg16_syn_bbr/path.pd.nii.gz cc.rostrum_avg16_syn_bbr/path.pd.nii.gz cc.splenium_avg16_syn_bbr/path.pd.nii.gz lh.af_avg16_syn_bbr/path.pd.nii.gz lh.ar_avg16_syn_bbr/path.pd.nii.gz lh.atr_avg16_syn_bbr/path.pd.nii.gz lh.cbd_avg16_syn_bbr/path.pd.nii.gz lh.cbv_avg16_syn_bbr/path.pd.nii.gz lh.cst_avg16_syn_bbr/path.pd.nii.gz lh.emc_avg16_syn_bbr/path.pd.nii.gz lh.fat_avg16_syn_bbr/path.pd.nii.gz lh.fx_avg16_syn_bbr/path.pd.nii.gz lh.ilf_avg16_syn_bbr/path.pd.nii.gz lh.mlf_avg16_syn_bbr/path.pd.nii.gz lh.or_avg16_syn_bbr/path.pd.nii.gz lh.slf1_avg16_syn_bbr/path.pd.nii.gz lh.slf2_avg16_syn_bbr/path.pd.nii.gz lh.slf3_avg16_syn_bbr/path.pd.nii.gz lh.uf_avg16_syn_bbr/path.pd.nii.gz mcp_avg16_syn_bbr/path.pd.nii.gz rh.af_avg16_syn_bbr/path.pd.nii.gz rh.ar_avg16_syn_bbr/path.pd.nii.gz rh.atr_avg16_syn_bbr/path.pd.nii.gz rh.cbd_avg16_syn_bbr/path.pd.nii.gz rh.cbv_avg16_syn_bbr/path.pd.nii.gz rh.cst_avg16_syn_bbr/path.pd.nii.gz rh.emc_avg16_syn_bbr/path.pd.nii.gz rh.fat_avg16_syn_bbr/path.pd.nii.gz rh.fx_avg16_syn_bbr/path.pd.nii.gz rh.ilf_avg16_syn_bbr/path.pd.nii.gz rh.mlf_avg16_syn_bbr/path.pd.nii.gz rh.or_avg16_syn_bbr/path.pd.nii.gz rh.slf1_avg16_syn_bbr/path.pd.nii.gz rh.slf2_avg16_syn_bbr/path.pd.nii.gz rh.slf3_avg16_syn_bbr/path.pd.nii.gz rh.uf_avg16_syn_bbr/path.pd.nii.gz Output file: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA002/dpath/merged_avg16_syn_bbr.mgz Color table file: /autofs/vast/freesurfer/centos7_x86_64/7.3.2/FreeSurferColorLUT.txt Lower threshold for display: 0.200000 Merging volume 1 of 42... Threshold: 25.2 Name: Anterior Commissure Merging volume 2 of 42... Threshold: 12 Name: Corpus Callosum - Body - Central Merging volume 3 of 42... Threshold: 12 Name: Corpus Callosum - Body - Parietal Merging volume 4 of 42... Threshold: 13 Name: Corpus Callosum - Body - Prefrontal Merging volume 5 of 42... Threshold: 9.8 Name: Corpus Callosum - Body - Premotor Merging volume 6 of 42... Threshold: 9.2 Name: Corpus Callosum - Body - Temporal Merging volume 7 of 42... Threshold: 12.6 Name: Corpus Callosum - Genu Merging volume 8 of 42... Threshold: 15.8 Name: Corpus Callosum - Rostrum Merging volume 9 of 42... Threshold: 17.8 Name: Corpus Callosum - Splenium Merging volume 10 of 42... Threshold: 21.4 Name: Left Arcuate Fasciculus Merging volume 11 of 42... Threshold: 50 Name: Left Acoustic Radiation Merging volume 12 of 42... Threshold: 27 Name: Left Anterior Thalamic Radiation Merging volume 13 of 42... Threshold: 47 Name: Left Cingulum Bundle - Dorsal Merging volume 14 of 42... Threshold: 36.2 Name: Left Cingulum Bundle - Ventral Merging volume 15 of 42... Threshold: 16.6 Name: Left Corticospinal Tract Merging volume 16 of 42... Threshold: 26 Name: Left Extreme Capsule Merging volume 17 of 42... Threshold: 24 Name: Left Frontal Aslant Tract Merging volume 18 of 42... Threshold: 23.4 Name: Left Fornix Merging volume 19 of 42... Threshold: 18.8 Name: Left Inferior Longitudinal Fasciculus Merging volume 20 of 42... Threshold: 18.2 Name: Left Middle Longitudinal Fasciculus Merging volume 21 of 42... Threshold: 30 Name: Left Optic Radiation Merging volume 22 of 42... Threshold: 15.6 Name: Left Superior Longitudinal Fasciculus - I Merging volume 23 of 42... Threshold: 25.8 Name: Left Superior Longitudinal Fasciculus - II Merging volume 24 of 42... Threshold: 21.8 Name: Left Superior Longitudinal Fasciculus - III Merging volume 25 of 42... Threshold: 22.2 Name: Left Uncinate Fasciculus Merging volume 26 of 42... Threshold: 7.8 Name: Middle Cerebellar Peduncle Merging volume 27 of 42... Threshold: 21.6 Name: Right Arcuate Fasciculus Merging volume 28 of 42... Threshold: 44 Name: Right Acoustic Radiation Merging volume 29 of 42... Threshold: 39.4 Name: Right Anterior Thalamic Radiation Merging volume 30 of 42... Threshold: 55.4 Name: Right Cingulum Bundle - Dorsal Merging volume 31 of 42... Threshold: 23.4 Name: Right Cingulum Bundle - Ventral Merging volume 32 of 42... Threshold: 20 Name: Right Corticospinal Tract Merging volume 33 of 42... Threshold: 21.6 Name: Right Extreme Capsule Merging volume 34 of 42... Threshold: 22.4 Name: Right Frontal Aslant Tract Merging volume 35 of 42... Threshold: 22.6 Name: Right Fornix Merging volume 36 of 42... Threshold: 12.8 Name: Right Inferior Longitudinal Fasciculus Merging volume 37 of 42... Threshold: 18.2 Name: Right Middle Longitudinal Fasciculus Merging volume 38 of 42... Threshold: 21 Name: Right Optic Radiation Merging volume 39 of 42... Threshold: 22.8 Name: Right Superior Longitudinal Fasciculus - I Merging volume 40 of 42... Threshold: 23.2 Name: Right Superior Longitudinal Fasciculus - II Merging volume 41 of 42... Threshold: 25 Name: Right Superior Longitudinal Fasciculus - III Merging volume 42 of 42... Threshold: 21.8 Name: Right Uncinate Fasciculus Done in 6.129 sec. dmri_mergepaths done #------------------------------------- trac-paths finished without error at Fri Jul 14 20:08:25 EDT 2023