Log file for surfreg
Fri Nov 13 11:34:29 EST 2015

setenv SUBJECTS_DIR /autofs/space/tanha_002/users/greve/fsdev.build/subjects
cd /autofs/space/tanha_002/users/greve/fsdev.build/subjects
/autofs/space/tanha_002/users/greve/fsdev.build/bin/surfreg --s fsaverage --t fsaverage_sym --lh

Linux compute-0-26 2.6.32-573.7.1.el6.x86_64 #1 SMP Tue Sep 22 22:00:00 UTC 2015 x86_64 x86_64 x86_64 GNU/Linux
#@# lh Fri Nov 13 11:34:30 EST 2015
#CMD# mris_register -curv -annot aparc.annot /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/surf/lh.sphere /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage_sym/lh.reg.template.tif /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/surf/lh.fsaverage_sym.sphere.reg
using smoothwm curvature for final alignment
zeroing medial wall in aparc.annot

cwd /autofs/space/tanha_002/users/greve/fsdev.build/subjects
cmdline mris_register -curv -annot aparc.annot /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/surf/lh.sphere /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage_sym/lh.reg.template.tif /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/surf/lh.fsaverage_sym.sphere.reg 

0 inflated.H
1 sulc
2 smoothwm (computed)
$Id: mris_register.c,v 1.61 2013/01/15 17:19:03 greve Exp $
  $Id: mrisurf.c,v 1.771 2015/11/06 16:00:41 fischl Exp $
reading surface from /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/surf/lh.sphere...
reading colortable from annotation file...
colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt)
reading template parameterization from /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage_sym/lh.reg.template.tif...
ripping medial wall...
MRISregister() -------
max_passes = 4 
min_degrees = 0.500000 
max_degrees = 64.000000 
nangles = 8 
tol=5.0e-01, sigma=0.0, host=compu, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=1.000, l_dist=5.000
using quadratic fit line minimization
complete_dist_mat 0
rms 0
smooth_averages 0
remove_neg 0
ico_order 0
which_surface 0
target_radius 0.000000
nfields 0
scale 0.000000
desired_rms_height -1.000000
momentum 0.950000
nbhd_size -10
max_nbrs 10
niterations 25
nsurfaces 0
SURFACES 3
flags 16 (10)
use curv 16
no sulc 0
no rigid align 0
mris->nsize 1
mris->hemisphere 0
randomSeed 0

tol=5.0e-01, sigma=0.0, host=compu, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=1.000, l_dist=5.000
using quadratic fit line minimization
--------------------
1 Reading lh.sulc
curvature mean = -0.010, std = 0.593
curvature mean = 0.064, std = 0.825
curvature mean = 0.000, std = 0.923
Starting MRISrigidBodyAlignGlobal()
  d=4.00 min @ (0.00, 0.00, -1.00) sse = 139055.2, tmin=7.8693
  d=2.00 min @ (0.00, 0.00, 0.50) sse = 138610.8, tmin=9.4933
  d=1.00 min @ (0.00, -0.25, -0.25) sse = 138398.0, tmin=11.1258
  d=0.50 min @ (-0.12, 0.00, 0.12) sse = 138295.2, tmin=12.8334
tol=1.0e+00, sigma=0.5, host=compu, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=0.050, l_spring=0.500, l_dist=5.000
using quadratic fit line minimization
MRISrigidBodyAlignGlobal() done  12.83 min
curvature mean = 0.071, std = 0.872
curvature mean = 0.002, std = 0.971
curvature mean = 0.073, std = 0.888
curvature mean = 0.001, std = 0.990
curvature mean = 0.074, std = 0.892
curvature mean = 0.000, std = 0.996
2 Reading smoothwm
curvature mean = -0.025, std = 0.167
curvature mean = 0.041, std = 0.125
curvature mean = 0.014, std = 0.613
curvature mean = 0.040, std = 0.155
curvature mean = 0.010, std = 0.784
curvature mean = 0.040, std = 0.169
curvature mean = 0.004, std = 0.894
curvature mean = 0.040, std = 0.175
curvature mean = 0.001, std = 0.949
MRISregister() return, current seed 0
writing registered surface to /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/surf/lh.fsaverage_sym.sphere.reg...
-01: dt=0.0000, 0 negative triangles
registration took 2.28 hours
surfreg-Run-Time-Hours fsaverage lh 0 2.28
Fri Nov 13 13:51:27 EST 2015
surfreg done