/autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/mri /autofs/space/tanha_002/users/greve/fsdev.build/bin/mri_nu_correct.mni --no-rescale --i orig.mgz --o orig_nu.mgz --n 1 --proto-iters 1000 --distance 200 --stop 1e-4 --shrink 2 nIters 1 $Id: mri_nu_correct.mni,v 1.23 2015/06/18 00:21:28 nicks Exp $ Linux compute-0-26 2.6.32-573.7.1.el6.x86_64 #1 SMP Tue Sep 22 22:00:00 UTC 2015 x86_64 x86_64 x86_64 GNU/Linux Fri Nov 13 11:35:32 EST 2015 Program nu_correct, built from: Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34 tmpdir is ./tmp.mri_nu_correct.mni.2535 /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/mri mri_convert orig.mgz ./tmp.mri_nu_correct.mni.2535/nu0.mnc -odt float mri_convert orig.mgz ./tmp.mri_nu_correct.mni.2535/nu0.mnc -odt float $Id: mri_convert.c,v 1.225 2015/10/19 18:48:26 fischl Exp $ reading from orig.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) changing data type from uchar to float (noscale = 0)... writing to ./tmp.mri_nu_correct.mni.2535/nu0.mnc... -------------------------------------------------------- Iteration 1 Fri Nov 13 11:35:36 EST 2015 nu_correct -clobber ./tmp.mri_nu_correct.mni.2535/nu0.mnc ./tmp.mri_nu_correct.mni.2535/nu1.mnc -tmpdir ./tmp.mri_nu_correct.mni.2535/0/ -iterations 1000 -stop 1e-4 -distance 200 -shrink 2 [greve@compute-0-26:/autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/mri/] [2015-11-13 11:35:37] running: /usr/pubsw/packages/mni/current/bin/nu_estimate_np_and_em -parzen -log -sharpen 0.15 0.01 -iterations 1000 -stop 1e-4 -shrink 2 -auto_mask -nonotify -b_spline 1.0e-7 -distance 200 -quiet -execute -clobber -nokeeptmp -tmpdir ./tmp.mri_nu_correct.mni.2535/0/ ./tmp.mri_nu_correct.mni.2535/nu0.mnc ./tmp.mri_nu_correct.mni.2535/nu1.imp 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orig.mgz --conform mri_convert ./tmp.mri_nu_correct.mni.2535/nu1.mnc orig_nu.mgz --like orig.mgz --conform $Id: mri_convert.c,v 1.225 2015/10/19 18:48:26 fischl Exp $ reading from ./tmp.mri_nu_correct.mni.2535/nu1.mnc... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) INFO: transform src into the like-volume: orig.mgz changing data type from float to uchar (noscale = 0)... MRIchangeType: Building histogram writing to orig_nu.mgz... Fri Nov 13 11:47:07 EST 2015 mri_nu_correct.mni done