--- PATCH: make_average_subject ---- https://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/6.0.0-patch/README Download make_average_subject and the platform-specific version of mri_aparc2aseg from this directory and move them to your freesurfer bin directory via: mv make_average_subject $FREESURFER_HOME/bin mv mri_aparc2aseg.platform $FREESURFER_HOME/bin/mri_aparc2aseg chmod +x $FREESURFER_HOME/bin/mri_aparc2aseg $FREESURFER_HOME/bin/make_average_subject We currently do not have a mac build of mri_aparc2aseg, and we recommend downloading the freesurfer dev release to resolve this issue.