#!/bin/bash ############################################################# ## ## This script is used to download the Freesurfer tutorial ## data onto the users machine. ## ## At the time of writing this script, the tutorial data ## is about 5Gigs. And that represents only a subset ## of the entire tutorial data set required to run all ## commands in the tutorial. ## ## The tutorial data will be downloaded into the directory ## specified by the TUTORIAL_DATA environment variable, or ## if undefined than it is installed to $FREESURFER_HOME/subjects/tutorial_data. ############################################################# HELP=" Usages: 1) Tutorial data will be downloaded into TUTORIAL_DATA. If TUTORIAL_DATA is undefined, it will be downloaded into $FREESURFER_HOME/subjects/tutorial_data $> fs_tutorial_data 2) Tuturial data will by downloaded into TUTORIAL_DATA with additional rsync flags: $> fs_tutorial_data 3) Show help: $> fs_update -h, -help, --help " RSYNC_COMMAND="rsync -ztrlv --progress" while [[ $# > 0 ]]; do key="$1" case $key in -h|-help|--h|--help) echo "${HELP}" exit 1 ;; *) RSYNC_COMMAND="${RSYNC_COMMAND} ${key}" ;; esac shift done ## Figure out where we want to install this data. if [[ -z "$TUTORIAL_DATA" ]]; then TUTORIAL_DATA=$FREESURFER_HOME/subjects/tutorial_data fi if [[ ! -d "$TUTORIAL_DATA" ]]; then mkdir -p "$TUTORIAL_DATA" fi ## Begin download echo " Tutorial data will be downloaded and installed into:" echo echo " $TUTORIAL_DATA" echo read -p " Shall I proceed? [y/n/Abort]: " echo if [[ $REPLY =~ ^[Yy]$ ]]; then ${RSYNC_COMMAND} rsync://surfer.nmr.mgh.harvard.edu/pub/data/tutorial_data/ $TUTORIAL_DATA exit 0 else exit 1 fi