Log file for surfreg Fri Nov 13 11:34:37 EST 2015 setenv SUBJECTS_DIR /autofs/space/tanha_002/users/greve/fsdev.build/subjects cd /autofs/space/tanha_002/users/greve/fsdev.build/subjects /autofs/space/tanha_002/users/greve/fsdev.build/bin/surfreg --s fsaverage --t fsaverage_sym --lh --xhemi Linux compute-0-26 2.6.32-573.7.1.el6.x86_64 #1 SMP Tue Sep 22 22:00:00 UTC 2015 x86_64 x86_64 x86_64 GNU/Linux xhemireg --s fsaverage outdir is /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi Logfile is /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/xhemireg.lh.log /autofs/space/tanha_002/users/greve/fsdev.build/bin/xhemireg --s fsaverage $Id: xhemireg,v 1.25 2013/08/29 18:49:33 greve Exp $ Fri Nov 13 11:34:37 EST 2015 Linux compute-0-26 2.6.32-573.7.1.el6.x86_64 #1 SMP Tue Sep 22 22:00:00 UTC 2015 x86_64 x86_64 x86_64 GNU/Linux /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage setenv SUBJECTS_DIR /autofs/space/tanha_002/users/greve/fsdev.build/subjects Fri Nov 13 11:34:38 EST 2015 Fri Nov 13 11:34:38 EST 2015 vol orig -------------- mri_vol2vol --mov mri/orig.mgz --targ mri/orig.mgz --reg /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/lrrev.register.dat --o /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/mri/orig.mgz --keep-precision --no-save-reg Matrix from regfile: -1.00000 0.00000 0.00000 1.00000; 0.00000 1.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; movvol mri/orig.mgz targvol mri/orig.mgz outvol /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/mri/orig.mgz regfile /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/lrrev.register.dat invert 0 tal 0 talres 2 regheader 0 noresample 0 interp trilinear (1) precision uchar (0) Gdiag_no -1 Synth 0 SynthSeed 1447948791 Final tkRAS-to-tkRAS Matrix is: -1.00000 0.00000 0.00000 1.00000; 0.00000 1.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; Vox2Vox Matrix is: -1.00000 0.00000 0.00000 255.00000; 0.00000 1.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; Resampling Output registration matrix is identity mri_vol2vol done vol T1 -------------- mri_vol2vol --mov mri/T1.mgz --targ mri/T1.mgz --reg /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/lrrev.register.dat --o /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/mri/T1.mgz --keep-precision --no-save-reg Matrix from regfile: -1.00000 0.00000 0.00000 1.00000; 0.00000 1.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; movvol mri/T1.mgz targvol mri/T1.mgz outvol /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/mri/T1.mgz regfile /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/lrrev.register.dat invert 0 tal 0 talres 2 regheader 0 noresample 0 interp trilinear (1) precision uchar (0) Gdiag_no -1 Synth 0 SynthSeed 1448051749 Final tkRAS-to-tkRAS Matrix is: -1.00000 0.00000 0.00000 1.00000; 0.00000 1.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; Vox2Vox Matrix is: -1.00000 0.00000 0.00000 255.00000; 0.00000 1.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; Resampling Output registration matrix is identity mri_vol2vol done vol brain -------------- mri_vol2vol --mov mri/brain.mgz --targ mri/brain.mgz --reg /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/lrrev.register.dat --o /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/mri/brain.mgz --keep-precision --no-save-reg Matrix from regfile: -1.00000 0.00000 0.00000 1.00000; 0.00000 1.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; movvol mri/brain.mgz targvol mri/brain.mgz outvol /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/mri/brain.mgz regfile /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/lrrev.register.dat invert 0 tal 0 talres 2 regheader 0 noresample 0 interp trilinear (1) precision uchar (0) Gdiag_no -1 Synth 0 SynthSeed 1447979700 Final tkRAS-to-tkRAS Matrix is: -1.00000 0.00000 0.00000 1.00000; 0.00000 1.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; Vox2Vox Matrix is: -1.00000 0.00000 0.00000 255.00000; 0.00000 1.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; Resampling Output registration matrix is identity mri_vol2vol done vol brainmask -------------- mri_vol2vol --mov mri/brainmask.mgz --targ mri/brainmask.mgz --reg /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/lrrev.register.dat --o /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/mri/brainmask.mgz --keep-precision --no-save-reg Matrix from regfile: -1.00000 0.00000 0.00000 1.00000; 0.00000 1.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; movvol mri/brainmask.mgz targvol mri/brainmask.mgz outvol /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/mri/brainmask.mgz regfile /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/lrrev.register.dat invert 0 tal 0 talres 2 regheader 0 noresample 0 interp trilinear (1) precision uchar (0) Gdiag_no -1 Synth 0 SynthSeed 1447708645 Final tkRAS-to-tkRAS Matrix is: -1.00000 0.00000 0.00000 1.00000; 0.00000 1.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; Vox2Vox Matrix is: -1.00000 0.00000 0.00000 255.00000; 0.00000 1.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; Resampling Output registration matrix is identity mri_vol2vol done vol norm -------------- WARNING: cannot find norm ... skipping ... vol aseg -------------- mri_vol2vol --mov mri/aseg.mgz --targ mri/aseg.mgz --reg /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/lrrev.register.dat --o /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/mri/aseg.mgz --keep-precision --no-save-reg Matrix from regfile: -1.00000 0.00000 0.00000 1.00000; 0.00000 1.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; movvol mri/aseg.mgz targvol mri/aseg.mgz outvol /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/mri/aseg.mgz regfile /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/lrrev.register.dat invert 0 tal 0 talres 2 regheader 0 noresample 0 interp trilinear (1) precision float (3) Gdiag_no -1 Synth 0 SynthSeed 1447466280 Final tkRAS-to-tkRAS Matrix is: -1.00000 0.00000 0.00000 1.00000; 0.00000 1.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; Vox2Vox Matrix is: -1.00000 0.00000 0.00000 255.00000; 0.00000 1.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; Resampling Output registration matrix is identity mri_vol2vol done mri_convert /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/mri/aseg.mgz /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/mri/aseg.mgz --left-right-swap-label mri_convert /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/mri/aseg.mgz /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/mri/aseg.mgz --left-right-swap-label $Id: mri_convert.c,v 1.225 2015/10/19 18:48:26 fischl Exp $ reading from /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/mri/aseg.mgz... Performing left-right swap of labels TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/mri/aseg.mgz... vol aparc+aseg -------------- mri_vol2vol --mov mri/aparc+aseg.mgz --targ mri/aparc+aseg.mgz --reg /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/lrrev.register.dat --o /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/mri/aparc+aseg.mgz --keep-precision --no-save-reg Matrix from regfile: -1.00000 0.00000 0.00000 1.00000; 0.00000 1.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; movvol mri/aparc+aseg.mgz targvol mri/aparc+aseg.mgz outvol /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/mri/aparc+aseg.mgz regfile /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/lrrev.register.dat invert 0 tal 0 talres 2 regheader 0 noresample 0 interp trilinear (1) precision int (1) Gdiag_no -1 Synth 0 SynthSeed 1448333940 Final tkRAS-to-tkRAS Matrix is: -1.00000 0.00000 0.00000 1.00000; 0.00000 1.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; Vox2Vox Matrix is: -1.00000 0.00000 0.00000 255.00000; 0.00000 1.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; Resampling Output registration matrix is identity mri_vol2vol done mri_convert /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/mri/aparc+aseg.mgz /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/mri/aparc+aseg.mgz --left-right-swap-label mri_convert /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/mri/aparc+aseg.mgz /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/mri/aparc+aseg.mgz --left-right-swap-label $Id: mri_convert.c,v 1.225 2015/10/19 18:48:26 fischl Exp $ reading from /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/mri/aparc+aseg.mgz... Performing left-right swap of labels TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/mri/aparc+aseg.mgz... vol nu -------------- WARNING: cannot find nu ... skipping ... Fri Nov 13 11:35:23 EST 2015 recon-all -sb fsaverage/xhemi -talairach Subject Stamp: freesurfer-x86_64-unknown-linux-gnu-dev5-20151109 Current Stamp: freesurfer-x86_64-unknown-linux-gnu-dev5-20151109 INFO: SUBJECTS_DIR is /autofs/space/tanha_002/users/greve/fsdev.build/subjects Actual FREESURFER_HOME /autofs/space/tanha_002/users/greve/fsdev.build Linux compute-0-26 2.6.32-573.7.1.el6.x86_64 #1 SMP Tue Sep 22 22:00:00 UTC 2015 x86_64 x86_64 x86_64 GNU/Linux `/autofs/space/tanha_002/users/greve/fsdev.build/bin/recon-all' -> `/autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/scripts/recon-all.local-copy' #-------------------------------------------- #@# Talairach Fri Nov 13 11:35:32 EST 2015 /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/mri mri_nu_correct.mni --no-rescale --i orig.mgz --o orig_nu.mgz --n 1 --proto-iters 1000 --distance 200 --stop 1e-4 --shrink 2 /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/mri /autofs/space/tanha_002/users/greve/fsdev.build/bin/mri_nu_correct.mni --no-rescale --i orig.mgz --o orig_nu.mgz --n 1 --proto-iters 1000 --distance 200 --stop 1e-4 --shrink 2 nIters 1 $Id: mri_nu_correct.mni,v 1.23 2015/06/18 00:21:28 nicks Exp $ Linux compute-0-26 2.6.32-573.7.1.el6.x86_64 #1 SMP Tue Sep 22 22:00:00 UTC 2015 x86_64 x86_64 x86_64 GNU/Linux Fri Nov 13 11:35:32 EST 2015 Program nu_correct, built from: Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34 tmpdir is ./tmp.mri_nu_correct.mni.2535 /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/mri mri_convert orig.mgz ./tmp.mri_nu_correct.mni.2535/nu0.mnc -odt float mri_convert orig.mgz ./tmp.mri_nu_correct.mni.2535/nu0.mnc -odt float $Id: mri_convert.c,v 1.225 2015/10/19 18:48:26 fischl Exp $ reading from orig.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) changing data type from uchar to float (noscale = 0)... writing to ./tmp.mri_nu_correct.mni.2535/nu0.mnc... -------------------------------------------------------- Iteration 1 Fri Nov 13 11:35:36 EST 2015 nu_correct -clobber ./tmp.mri_nu_correct.mni.2535/nu0.mnc ./tmp.mri_nu_correct.mni.2535/nu1.mnc -tmpdir ./tmp.mri_nu_correct.mni.2535/0/ -iterations 1000 -stop 1e-4 -distance 200 -shrink 2 [greve@compute-0-26:/autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/mri/] [2015-11-13 11:35:37] running: /usr/pubsw/packages/mni/current/bin/nu_estimate_np_and_em -parzen -log -sharpen 0.15 0.01 -iterations 1000 -stop 1e-4 -shrink 2 -auto_mask -nonotify -b_spline 1.0e-7 -distance 200 -quiet -execute -clobber -nokeeptmp -tmpdir ./tmp.mri_nu_correct.mni.2535/0/ ./tmp.mri_nu_correct.mni.2535/nu0.mnc ./tmp.mri_nu_correct.mni.2535/nu1.imp 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orig.mgz --conform mri_convert ./tmp.mri_nu_correct.mni.2535/nu1.mnc orig_nu.mgz --like orig.mgz --conform $Id: mri_convert.c,v 1.225 2015/10/19 18:48:26 fischl Exp $ reading from ./tmp.mri_nu_correct.mni.2535/nu1.mnc... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) INFO: transform src into the like-volume: orig.mgz changing data type from float to uchar (noscale = 0)... MRIchangeType: Building histogram writing to orig_nu.mgz... Fri Nov 13 11:47:07 EST 2015 mri_nu_correct.mni done talairach_avi --i orig_nu.mgz --xfm transforms/talairach.auto.xfm talairach_avi log file is transforms/talairach_avi.log... cp transforms/talairach.auto.xfm transforms/talairach.xfm #------------------------------------------ Started at Fri Nov 13 11:35:23 EST 2015 Ended at Fri Nov 13 11:48:23 EST 2015 #@#%# recon-all-run-time-hours 0.217 recon-all -s fsaverage/xhemi finished without error at Fri Nov 13 11:48:23 EST 2015 done Fri Nov 13 11:48:23 EST 2015 mri_surf2surf --s fsaverage --sval-xyz orig --hemi lh --tval-xyz /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/mri/orig.mgz --tval /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/surf/rh.orig --reg /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/lrrev.register.dat $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /autofs/space/tanha_002/users/greve/fsdev.build/subjects cd /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage mri_surf2surf --s fsaverage --sval-xyz orig --hemi lh --tval-xyz /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/mri/orig.mgz --tval /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/surf/rh.orig --reg /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/lrrev.register.dat sysname Linux hostname compute-0-26 machine x86_64 user greve srcsubject = fsaverage srcval = (null) srctype = trgsubject = fsaverage trgval = /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/surf/rh.orig trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = (null) label-trg = (null) OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/surf/lh.sphere.reg Loading source data Reading surface file /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/surf/lh.orig Applying linear registration transform -1.00000 0.00000 0.00000 1.00000; 0.00000 1.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; Determinant of linear transform is negative, so reversing face order INFO: trgsubject = srcsubject Saving target data Reversing Face Order Fri Nov 13 11:48:30 EST 2015 mri_surf2surf --s fsaverage --sval-xyz white --hemi lh --tval-xyz /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/mri/orig.mgz --tval /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/surf/rh.white --reg /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/lrrev.register.dat $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /autofs/space/tanha_002/users/greve/fsdev.build/subjects cd /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage mri_surf2surf --s fsaverage --sval-xyz white --hemi lh --tval-xyz /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/mri/orig.mgz --tval /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/surf/rh.white --reg /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/lrrev.register.dat sysname Linux hostname compute-0-26 machine x86_64 user greve srcsubject = fsaverage srcval = (null) srctype = trgsubject = fsaverage trgval = /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/surf/rh.white trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = (null) label-trg = (null) OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/surf/lh.sphere.reg Loading source data Reading surface file /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/surf/lh.white Applying linear registration transform -1.00000 0.00000 0.00000 1.00000; 0.00000 1.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; Determinant of linear transform is negative, so reversing face order INFO: trgsubject = srcsubject Saving target data Reversing Face Order Fri Nov 13 11:48:37 EST 2015 mri_surf2surf --s fsaverage --sval-xyz pial --hemi lh --tval-xyz /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/mri/orig.mgz --tval /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/surf/rh.pial --reg /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/lrrev.register.dat $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /autofs/space/tanha_002/users/greve/fsdev.build/subjects cd /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage mri_surf2surf --s fsaverage --sval-xyz pial --hemi lh --tval-xyz /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/mri/orig.mgz --tval /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/surf/rh.pial --reg /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/lrrev.register.dat sysname Linux hostname compute-0-26 machine x86_64 user greve srcsubject = fsaverage srcval = (null) srctype = trgsubject = fsaverage trgval = /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/surf/rh.pial trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = (null) label-trg = (null) OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/surf/lh.sphere.reg Loading source data Reading surface file /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/surf/lh.pial Applying linear registration transform -1.00000 0.00000 0.00000 1.00000; 0.00000 1.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; Determinant of linear transform is negative, so reversing face order INFO: trgsubject = srcsubject Saving target data Reversing Face Order Fri Nov 13 11:48:44 EST 2015 mri_surf2surf --s fsaverage --sval-xyz smoothwm --hemi lh --tval-xyz /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/mri/orig.mgz --tval /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/surf/rh.smoothwm --reg /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/lrrev.register.dat $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /autofs/space/tanha_002/users/greve/fsdev.build/subjects cd /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage mri_surf2surf --s fsaverage --sval-xyz smoothwm --hemi lh --tval-xyz /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/mri/orig.mgz --tval /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/surf/rh.smoothwm --reg /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/lrrev.register.dat sysname Linux hostname compute-0-26 machine x86_64 user greve srcsubject = fsaverage srcval = (null) srctype = trgsubject = fsaverage trgval = /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/surf/rh.smoothwm trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = (null) label-trg = (null) OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/surf/lh.sphere.reg Loading source data Reading surface file /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/surf/lh.smoothwm Applying linear registration transform -1.00000 0.00000 0.00000 1.00000; 0.00000 1.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; Determinant of linear transform is negative, so reversing face order INFO: trgsubject = srcsubject Saving target data Reversing Face Order Fri Nov 13 11:48:52 EST 2015 mri_surf2surf --s fsaverage --sval-xyz sphere --hemi lh --tval-xyz /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/mri/orig.mgz --tval /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/surf/rh.sphere --reg /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/lrrev.pure.register.dat $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /autofs/space/tanha_002/users/greve/fsdev.build/subjects cd /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage mri_surf2surf --s fsaverage --sval-xyz sphere --hemi lh --tval-xyz /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/mri/orig.mgz --tval /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/surf/rh.sphere --reg /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/lrrev.pure.register.dat sysname Linux hostname compute-0-26 machine x86_64 user greve srcsubject = fsaverage srcval = (null) srctype = trgsubject = fsaverage trgval = /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/surf/rh.sphere trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = (null) label-trg = (null) OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/surf/lh.sphere.reg Loading source data Reading surface file /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/surf/lh.sphere Applying linear registration transform -1.00000 0.00000 0.00000 0.00000; 0.00000 1.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; Determinant of linear transform is negative, so reversing face order INFO: trgsubject = srcsubject Saving target data Reversing Face Order Fri Nov 13 11:49:01 EST 2015 mri_surf2surf --s fsaverage --sval-xyz inflated --hemi lh --tval-xyz /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/mri/orig.mgz --tval /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/surf/rh.inflated --reg /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/lrrev.pure.register.dat $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /autofs/space/tanha_002/users/greve/fsdev.build/subjects cd /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage mri_surf2surf --s fsaverage --sval-xyz inflated --hemi lh --tval-xyz /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/mri/orig.mgz --tval /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/surf/rh.inflated --reg /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/lrrev.pure.register.dat sysname Linux hostname compute-0-26 machine x86_64 user greve srcsubject = fsaverage srcval = (null) srctype = trgsubject = fsaverage trgval = /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/surf/rh.inflated trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = (null) label-trg = (null) OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/surf/lh.sphere.reg Loading source data Reading surface file /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/surf/lh.inflated Applying linear registration transform -1.00000 0.00000 0.00000 0.00000; 0.00000 1.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; Determinant of linear transform is negative, so reversing face order INFO: trgsubject = srcsubject Saving target data Reversing Face Order cp label/lh.aparc.annot /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/label/rh.aparc.annot cp label/lh.aparc.a2009s.annot /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/label/rh.aparc.a2009s.annot done hemi lh Logfile is /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/xhemireg.rh.log /autofs/space/tanha_002/users/greve/fsdev.build/bin/xhemireg --s fsaverage $Id: xhemireg,v 1.25 2013/08/29 18:49:33 greve Exp $ Fri Nov 13 11:49:07 EST 2015 Linux compute-0-26 2.6.32-573.7.1.el6.x86_64 #1 SMP Tue Sep 22 22:00:00 UTC 2015 x86_64 x86_64 x86_64 GNU/Linux /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage setenv SUBJECTS_DIR /autofs/space/tanha_002/users/greve/fsdev.build/subjects Fri Nov 13 11:49:07 EST 2015 mri_surf2surf --s fsaverage --sval-xyz orig --hemi rh --tval-xyz /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/mri/orig.mgz --tval /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/surf/lh.orig --reg /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/lrrev.register.dat $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /autofs/space/tanha_002/users/greve/fsdev.build/subjects cd /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage mri_surf2surf --s fsaverage --sval-xyz orig --hemi rh --tval-xyz /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/mri/orig.mgz --tval /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/surf/lh.orig --reg /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/lrrev.register.dat sysname Linux hostname compute-0-26 machine x86_64 user greve srcsubject = fsaverage srcval = (null) srctype = trgsubject = fsaverage trgval = /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/surf/lh.orig trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = (null) label-trg = (null) OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/surf/rh.sphere.reg Loading source data Reading surface file /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/surf/rh.orig Applying linear registration transform -1.00000 0.00000 0.00000 1.00000; 0.00000 1.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; Determinant of linear transform is negative, so reversing face order INFO: trgsubject = srcsubject Saving target data Reversing Face Order Fri Nov 13 11:49:14 EST 2015 mri_surf2surf --s fsaverage --sval-xyz white --hemi rh --tval-xyz /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/mri/orig.mgz --tval /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/surf/lh.white --reg /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/lrrev.register.dat $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /autofs/space/tanha_002/users/greve/fsdev.build/subjects cd /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage mri_surf2surf --s fsaverage --sval-xyz white --hemi rh --tval-xyz /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/mri/orig.mgz --tval /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/surf/lh.white --reg /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/lrrev.register.dat sysname Linux hostname compute-0-26 machine x86_64 user greve srcsubject = fsaverage srcval = (null) srctype = trgsubject = fsaverage trgval = /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/surf/lh.white trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = (null) label-trg = (null) OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/surf/rh.sphere.reg Loading source data Reading surface file /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/surf/rh.white Applying linear registration transform -1.00000 0.00000 0.00000 1.00000; 0.00000 1.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; Determinant of linear transform is negative, so reversing face order INFO: trgsubject = srcsubject Saving target data Reversing Face Order Fri Nov 13 11:49:22 EST 2015 mri_surf2surf --s fsaverage --sval-xyz pial --hemi rh --tval-xyz /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/mri/orig.mgz --tval /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/surf/lh.pial --reg /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/lrrev.register.dat $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /autofs/space/tanha_002/users/greve/fsdev.build/subjects cd /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage mri_surf2surf --s fsaverage --sval-xyz pial --hemi rh --tval-xyz /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/mri/orig.mgz --tval /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/surf/lh.pial --reg /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/lrrev.register.dat sysname Linux hostname compute-0-26 machine x86_64 user greve srcsubject = fsaverage srcval = (null) srctype = trgsubject = fsaverage trgval = /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/surf/lh.pial trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = (null) label-trg = (null) OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/surf/rh.sphere.reg Loading source data Reading surface file /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/surf/rh.pial Applying linear registration transform -1.00000 0.00000 0.00000 1.00000; 0.00000 1.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; Determinant of linear transform is negative, so reversing face order INFO: trgsubject = srcsubject Saving target data Reversing Face Order Fri Nov 13 11:49:30 EST 2015 mri_surf2surf --s fsaverage --sval-xyz smoothwm --hemi rh --tval-xyz /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/mri/orig.mgz --tval /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/surf/lh.smoothwm --reg /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/lrrev.register.dat $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /autofs/space/tanha_002/users/greve/fsdev.build/subjects cd /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage mri_surf2surf --s fsaverage --sval-xyz smoothwm --hemi rh --tval-xyz /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/mri/orig.mgz --tval /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/surf/lh.smoothwm --reg /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/lrrev.register.dat sysname Linux hostname compute-0-26 machine x86_64 user greve srcsubject = fsaverage srcval = (null) srctype = trgsubject = fsaverage trgval = /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/surf/lh.smoothwm trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = (null) label-trg = (null) OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/surf/rh.sphere.reg Loading source data Reading surface file /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/surf/rh.smoothwm Applying linear registration transform -1.00000 0.00000 0.00000 1.00000; 0.00000 1.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; Determinant of linear transform is negative, so reversing face order INFO: trgsubject = srcsubject Saving target data Reversing Face Order Fri Nov 13 11:49:36 EST 2015 mri_surf2surf --s fsaverage --sval-xyz sphere --hemi rh --tval-xyz /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/mri/orig.mgz --tval /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/surf/lh.sphere --reg /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/lrrev.pure.register.dat $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /autofs/space/tanha_002/users/greve/fsdev.build/subjects cd /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage mri_surf2surf --s fsaverage --sval-xyz sphere --hemi rh --tval-xyz /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/mri/orig.mgz --tval /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/surf/lh.sphere --reg /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/lrrev.pure.register.dat sysname Linux hostname compute-0-26 machine x86_64 user greve srcsubject = fsaverage srcval = (null) srctype = trgsubject = fsaverage trgval = /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/surf/lh.sphere trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = (null) label-trg = (null) OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/surf/rh.sphere.reg Loading source data Reading surface file /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/surf/rh.sphere Applying linear registration transform -1.00000 0.00000 0.00000 0.00000; 0.00000 1.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; Determinant of linear transform is negative, so reversing face order INFO: trgsubject = srcsubject Saving target data Reversing Face Order Fri Nov 13 11:49:43 EST 2015 mri_surf2surf --s fsaverage --sval-xyz inflated --hemi rh --tval-xyz /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/mri/orig.mgz --tval /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/surf/lh.inflated --reg /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/lrrev.pure.register.dat $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /autofs/space/tanha_002/users/greve/fsdev.build/subjects cd /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage mri_surf2surf --s fsaverage --sval-xyz inflated --hemi rh --tval-xyz /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/mri/orig.mgz --tval /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/surf/lh.inflated --reg /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/lrrev.pure.register.dat sysname Linux hostname compute-0-26 machine x86_64 user greve srcsubject = fsaverage srcval = (null) srctype = trgsubject = fsaverage trgval = /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/surf/lh.inflated trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = (null) label-trg = (null) OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/surf/rh.sphere.reg Loading source data Reading surface file /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/surf/rh.inflated Applying linear registration transform -1.00000 0.00000 0.00000 0.00000; 0.00000 1.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; Determinant of linear transform is negative, so reversing face order INFO: trgsubject = srcsubject Saving target data Reversing Face Order cp label/rh.aparc.annot /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/label/lh.aparc.annot cp label/rh.aparc.a2009s.annot /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/label/lh.aparc.a2009s.annot done hemi rh Fri Nov 13 11:49:50 EST 2015 xhemireg done #@# lh Fri Nov 13 11:49:50 EST 2015 #CMD# mris_register -curv -annot aparc.annot /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/surf/lh.sphere /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage_sym/lh.reg.template.tif /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/surf/lh.fsaverage_sym.sphere.reg using smoothwm curvature for final alignment zeroing medial wall in aparc.annot cwd /autofs/space/tanha_002/users/greve/fsdev.build/subjects cmdline mris_register -curv -annot aparc.annot /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/surf/lh.sphere /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage_sym/lh.reg.template.tif /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/surf/lh.fsaverage_sym.sphere.reg 0 inflated.H 1 sulc 2 smoothwm (computed) $Id: mris_register.c,v 1.61 2013/01/15 17:19:03 greve Exp $ $Id: mrisurf.c,v 1.771 2015/11/06 16:00:41 fischl Exp $ reading surface from /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/surf/lh.sphere... reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) reading template parameterization from /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage_sym/lh.reg.template.tif... ripping medial wall... MRISregister() ------- max_passes = 4 min_degrees = 0.500000 max_degrees = 64.000000 nangles = 8 tol=5.0e-01, sigma=0.0, host=compu, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=1.000, l_dist=5.000 using quadratic fit line minimization complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height -1.000000 momentum 0.950000 nbhd_size -10 max_nbrs 10 niterations 25 nsurfaces 0 SURFACES 3 flags 16 (10) use curv 16 no sulc 0 no rigid align 0 mris->nsize 1 mris->hemisphere 0 randomSeed 0 tol=5.0e-01, sigma=0.0, host=compu, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=1.000, l_dist=5.000 using quadratic fit line minimization -------------------- 1 Reading lh.sulc curvature mean = -0.011, std = 0.591 curvature mean = 0.077, std = 0.831 curvature mean = 0.001, std = 0.924 Starting MRISrigidBodyAlignGlobal() d=64.00 min @ (0.00, -16.00, 0.00) sse = 310414.5, tmin=1.5284 d=32.00 min @ (8.00, 0.00, -8.00) sse = 197619.3, tmin=3.0829 d=16.00 min @ (0.00, 4.00, 0.00) sse = 158443.2, tmin=4.6582 d=8.00 min @ (2.00, 0.00, 0.00) sse = 147765.7, tmin=6.2413 d=4.00 min @ (-1.00, 0.00, 1.00) sse = 143231.0, tmin=7.8327 d=2.00 min @ (0.50, 0.00, 0.00) sse = 142567.0, tmin=9.5169 d=1.00 min @ (0.00, 0.25, 0.00) sse = 142530.7, tmin=11.1381 d=0.50 min @ (-0.12, -0.12, 0.12) sse = 142429.4, tmin=12.8779 tol=1.0e+00, sigma=0.5, host=compu, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=0.050, l_spring=0.500, l_dist=5.000 using quadratic fit line minimization MRISrigidBodyAlignGlobal() done 12.88 min curvature mean = 0.079, std = 0.874 curvature mean = 0.002, std = 0.971 curvature mean = 0.081, std = 0.890 curvature mean = 0.001, std = 0.990 curvature mean = 0.080, std = 0.894 curvature mean = 0.000, std = 0.996 2 Reading smoothwm curvature mean = -0.024, std = 0.168 curvature mean = 0.042, std = 0.125 curvature mean = 0.013, std = 0.608 curvature mean = 0.041, std = 0.155 curvature mean = 0.010, std = 0.781 curvature mean = 0.041, std = 0.169 curvature mean = 0.003, std = 0.891 curvature mean = 0.041, std = 0.175 curvature mean = 0.001, std = 0.947 MRISregister() return, current seed 0 writing registered surface to /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/surf/lh.fsaverage_sym.sphere.reg... -01: dt=0.0000, 0 negative triangles registration took 2.30 hours surfreg-Run-Time-Hours fsaverage lh 1 2.56 Fri Nov 13 14:08:05 EST 2015 surfreg done