/autofs/space/tanha_002/users/greve/fsdev.build/bin/xhemireg --s fsaverage $Id: xhemireg,v 1.25 2013/08/29 18:49:33 greve Exp $ Fri Nov 13 11:34:37 EST 2015 Linux compute-0-26 2.6.32-573.7.1.el6.x86_64 #1 SMP Tue Sep 22 22:00:00 UTC 2015 x86_64 x86_64 x86_64 GNU/Linux /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage setenv SUBJECTS_DIR /autofs/space/tanha_002/users/greve/fsdev.build/subjects Fri Nov 13 11:34:38 EST 2015 Fri Nov 13 11:34:38 EST 2015 vol orig -------------- mri_vol2vol --mov mri/orig.mgz --targ mri/orig.mgz --reg /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/lrrev.register.dat --o /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/mri/orig.mgz --keep-precision --no-save-reg Matrix from regfile: -1.00000 0.00000 0.00000 1.00000; 0.00000 1.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; movvol mri/orig.mgz targvol mri/orig.mgz outvol /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/mri/orig.mgz regfile /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/lrrev.register.dat invert 0 tal 0 talres 2 regheader 0 noresample 0 interp trilinear (1) precision uchar (0) Gdiag_no -1 Synth 0 SynthSeed 1447948791 Final tkRAS-to-tkRAS Matrix is: -1.00000 0.00000 0.00000 1.00000; 0.00000 1.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; Vox2Vox Matrix is: -1.00000 0.00000 0.00000 255.00000; 0.00000 1.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; Resampling Output registration matrix is identity mri_vol2vol done vol T1 -------------- mri_vol2vol --mov mri/T1.mgz --targ mri/T1.mgz --reg /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/lrrev.register.dat --o /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/mri/T1.mgz --keep-precision --no-save-reg Matrix from regfile: -1.00000 0.00000 0.00000 1.00000; 0.00000 1.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; movvol mri/T1.mgz targvol mri/T1.mgz outvol /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/mri/T1.mgz regfile /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/lrrev.register.dat invert 0 tal 0 talres 2 regheader 0 noresample 0 interp trilinear (1) precision uchar (0) Gdiag_no -1 Synth 0 SynthSeed 1448051749 Final tkRAS-to-tkRAS Matrix is: -1.00000 0.00000 0.00000 1.00000; 0.00000 1.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; Vox2Vox Matrix is: -1.00000 0.00000 0.00000 255.00000; 0.00000 1.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; Resampling Output registration matrix is identity mri_vol2vol done vol brain -------------- mri_vol2vol --mov mri/brain.mgz --targ mri/brain.mgz --reg /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/lrrev.register.dat --o /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/mri/brain.mgz --keep-precision --no-save-reg Matrix from regfile: -1.00000 0.00000 0.00000 1.00000; 0.00000 1.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; movvol mri/brain.mgz targvol mri/brain.mgz outvol /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/mri/brain.mgz regfile /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/lrrev.register.dat invert 0 tal 0 talres 2 regheader 0 noresample 0 interp trilinear (1) precision uchar (0) Gdiag_no -1 Synth 0 SynthSeed 1447979700 Final tkRAS-to-tkRAS Matrix is: -1.00000 0.00000 0.00000 1.00000; 0.00000 1.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; Vox2Vox Matrix is: -1.00000 0.00000 0.00000 255.00000; 0.00000 1.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; Resampling Output registration matrix is identity mri_vol2vol done vol brainmask -------------- mri_vol2vol --mov mri/brainmask.mgz --targ mri/brainmask.mgz --reg /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/lrrev.register.dat --o /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/mri/brainmask.mgz --keep-precision --no-save-reg Matrix from regfile: -1.00000 0.00000 0.00000 1.00000; 0.00000 1.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; movvol mri/brainmask.mgz targvol mri/brainmask.mgz outvol /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/mri/brainmask.mgz regfile /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/lrrev.register.dat invert 0 tal 0 talres 2 regheader 0 noresample 0 interp trilinear (1) precision uchar (0) Gdiag_no -1 Synth 0 SynthSeed 1447708645 Final tkRAS-to-tkRAS Matrix is: -1.00000 0.00000 0.00000 1.00000; 0.00000 1.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; Vox2Vox Matrix is: -1.00000 0.00000 0.00000 255.00000; 0.00000 1.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; Resampling Output registration matrix is identity mri_vol2vol done vol norm -------------- WARNING: cannot find norm ... skipping ... vol aseg -------------- mri_vol2vol --mov mri/aseg.mgz --targ mri/aseg.mgz --reg /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/lrrev.register.dat --o /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/mri/aseg.mgz --keep-precision --no-save-reg Matrix from regfile: -1.00000 0.00000 0.00000 1.00000; 0.00000 1.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; movvol mri/aseg.mgz targvol mri/aseg.mgz outvol /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/mri/aseg.mgz regfile /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/lrrev.register.dat invert 0 tal 0 talres 2 regheader 0 noresample 0 interp trilinear (1) precision float (3) Gdiag_no -1 Synth 0 SynthSeed 1447466280 Final tkRAS-to-tkRAS Matrix is: -1.00000 0.00000 0.00000 1.00000; 0.00000 1.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; Vox2Vox Matrix is: -1.00000 0.00000 0.00000 255.00000; 0.00000 1.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; Resampling Output registration matrix is identity mri_vol2vol done mri_convert /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/mri/aseg.mgz /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/mri/aseg.mgz --left-right-swap-label mri_convert /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/mri/aseg.mgz /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/mri/aseg.mgz --left-right-swap-label $Id: mri_convert.c,v 1.225 2015/10/19 18:48:26 fischl Exp $ reading from /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/mri/aseg.mgz... Performing left-right swap of labels TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/mri/aseg.mgz... vol aparc+aseg -------------- mri_vol2vol --mov mri/aparc+aseg.mgz --targ mri/aparc+aseg.mgz --reg /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/lrrev.register.dat --o /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/mri/aparc+aseg.mgz --keep-precision --no-save-reg Matrix from regfile: -1.00000 0.00000 0.00000 1.00000; 0.00000 1.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; movvol mri/aparc+aseg.mgz targvol mri/aparc+aseg.mgz outvol /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/mri/aparc+aseg.mgz regfile /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/lrrev.register.dat invert 0 tal 0 talres 2 regheader 0 noresample 0 interp trilinear (1) precision int (1) Gdiag_no -1 Synth 0 SynthSeed 1448333940 Final tkRAS-to-tkRAS Matrix is: -1.00000 0.00000 0.00000 1.00000; 0.00000 1.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; Vox2Vox Matrix is: -1.00000 0.00000 0.00000 255.00000; 0.00000 1.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; Resampling Output registration matrix is identity mri_vol2vol done mri_convert /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/mri/aparc+aseg.mgz /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/mri/aparc+aseg.mgz --left-right-swap-label mri_convert /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/mri/aparc+aseg.mgz /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/mri/aparc+aseg.mgz --left-right-swap-label $Id: mri_convert.c,v 1.225 2015/10/19 18:48:26 fischl Exp $ reading from /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/mri/aparc+aseg.mgz... Performing left-right swap of labels TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/mri/aparc+aseg.mgz... vol nu -------------- WARNING: cannot find nu ... skipping ... Fri Nov 13 11:35:23 EST 2015 recon-all -sb fsaverage/xhemi -talairach Subject Stamp: freesurfer-x86_64-unknown-linux-gnu-dev5-20151109 Current Stamp: freesurfer-x86_64-unknown-linux-gnu-dev5-20151109 INFO: SUBJECTS_DIR is /autofs/space/tanha_002/users/greve/fsdev.build/subjects Actual FREESURFER_HOME /autofs/space/tanha_002/users/greve/fsdev.build Linux compute-0-26 2.6.32-573.7.1.el6.x86_64 #1 SMP Tue Sep 22 22:00:00 UTC 2015 x86_64 x86_64 x86_64 GNU/Linux `/autofs/space/tanha_002/users/greve/fsdev.build/bin/recon-all' -> `/autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/scripts/recon-all.local-copy' #-------------------------------------------- #@# Talairach Fri Nov 13 11:35:32 EST 2015 /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/mri mri_nu_correct.mni --no-rescale --i orig.mgz --o orig_nu.mgz --n 1 --proto-iters 1000 --distance 200 --stop 1e-4 --shrink 2 /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/mri /autofs/space/tanha_002/users/greve/fsdev.build/bin/mri_nu_correct.mni --no-rescale --i orig.mgz --o orig_nu.mgz --n 1 --proto-iters 1000 --distance 200 --stop 1e-4 --shrink 2 nIters 1 $Id: mri_nu_correct.mni,v 1.23 2015/06/18 00:21:28 nicks Exp $ Linux compute-0-26 2.6.32-573.7.1.el6.x86_64 #1 SMP Tue Sep 22 22:00:00 UTC 2015 x86_64 x86_64 x86_64 GNU/Linux Fri Nov 13 11:35:32 EST 2015 Program nu_correct, built from: Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34 tmpdir is ./tmp.mri_nu_correct.mni.2535 /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/mri mri_convert orig.mgz ./tmp.mri_nu_correct.mni.2535/nu0.mnc -odt float mri_convert orig.mgz ./tmp.mri_nu_correct.mni.2535/nu0.mnc -odt float $Id: mri_convert.c,v 1.225 2015/10/19 18:48:26 fischl Exp $ reading from orig.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) changing data type from uchar to float (noscale = 0)... writing to ./tmp.mri_nu_correct.mni.2535/nu0.mnc... -------------------------------------------------------- Iteration 1 Fri Nov 13 11:35:36 EST 2015 nu_correct -clobber ./tmp.mri_nu_correct.mni.2535/nu0.mnc ./tmp.mri_nu_correct.mni.2535/nu1.mnc -tmpdir ./tmp.mri_nu_correct.mni.2535/0/ -iterations 1000 -stop 1e-4 -distance 200 -shrink 2 [greve@compute-0-26:/autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/mri/] [2015-11-13 11:35:37] running: /usr/pubsw/packages/mni/current/bin/nu_estimate_np_and_em -parzen -log -sharpen 0.15 0.01 -iterations 1000 -stop 1e-4 -shrink 2 -auto_mask -nonotify -b_spline 1.0e-7 -distance 200 -quiet -execute -clobber -nokeeptmp -tmpdir ./tmp.mri_nu_correct.mni.2535/0/ ./tmp.mri_nu_correct.mni.2535/nu0.mnc ./tmp.mri_nu_correct.mni.2535/nu1.imp 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Processing:.................................................................................................................................Done Processing:.................................................................................................................................Done Processing:.................................................................................................................................Done Processing:.................................................................................................................................Done Processing:.................................................................................................................................Done Processing:.................................................................................................................................Done Number of iterations: 132 CV of field change: 9.95676e-05 mri_convert ./tmp.mri_nu_correct.mni.2535/nu1.mnc orig_nu.mgz --like orig.mgz --conform mri_convert ./tmp.mri_nu_correct.mni.2535/nu1.mnc orig_nu.mgz --like orig.mgz --conform $Id: mri_convert.c,v 1.225 2015/10/19 18:48:26 fischl Exp $ reading from ./tmp.mri_nu_correct.mni.2535/nu1.mnc... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) INFO: transform src into the like-volume: orig.mgz changing data type from float to uchar (noscale = 0)... MRIchangeType: Building histogram writing to orig_nu.mgz... Fri Nov 13 11:47:07 EST 2015 mri_nu_correct.mni done talairach_avi --i orig_nu.mgz --xfm transforms/talairach.auto.xfm talairach_avi log file is transforms/talairach_avi.log... cp transforms/talairach.auto.xfm transforms/talairach.xfm #------------------------------------------ Started at Fri Nov 13 11:35:23 EST 2015 Ended at Fri Nov 13 11:48:23 EST 2015 #@#%# recon-all-run-time-hours 0.217 recon-all -s fsaverage/xhemi finished without error at Fri Nov 13 11:48:23 EST 2015 done Fri Nov 13 11:48:23 EST 2015 mri_surf2surf --s fsaverage --sval-xyz orig --hemi lh --tval-xyz /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/mri/orig.mgz --tval /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/surf/rh.orig --reg /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/lrrev.register.dat $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /autofs/space/tanha_002/users/greve/fsdev.build/subjects cd /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage mri_surf2surf --s fsaverage --sval-xyz orig --hemi lh --tval-xyz /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/mri/orig.mgz --tval /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/surf/rh.orig --reg /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/lrrev.register.dat sysname Linux hostname compute-0-26 machine x86_64 user greve srcsubject = fsaverage srcval = (null) srctype = trgsubject = fsaverage trgval = /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/surf/rh.orig trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = (null) label-trg = (null) OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/surf/lh.sphere.reg Loading source data Reading surface file /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/surf/lh.orig Applying linear registration transform -1.00000 0.00000 0.00000 1.00000; 0.00000 1.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; Determinant of linear transform is negative, so reversing face order INFO: trgsubject = srcsubject Saving target data Reversing Face Order Fri Nov 13 11:48:30 EST 2015 mri_surf2surf --s fsaverage --sval-xyz white --hemi lh --tval-xyz /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/mri/orig.mgz --tval /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/surf/rh.white --reg /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/lrrev.register.dat $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /autofs/space/tanha_002/users/greve/fsdev.build/subjects cd /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage mri_surf2surf --s fsaverage --sval-xyz white --hemi lh --tval-xyz /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/mri/orig.mgz --tval /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/surf/rh.white --reg /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/lrrev.register.dat sysname Linux hostname compute-0-26 machine x86_64 user greve srcsubject = fsaverage srcval = (null) srctype = trgsubject = fsaverage trgval = /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/surf/rh.white trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = (null) label-trg = (null) OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/surf/lh.sphere.reg Loading source data Reading surface file /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/surf/lh.white Applying linear registration transform -1.00000 0.00000 0.00000 1.00000; 0.00000 1.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; Determinant of linear transform is negative, so reversing face order INFO: trgsubject = srcsubject Saving target data Reversing Face Order Fri Nov 13 11:48:37 EST 2015 mri_surf2surf --s fsaverage --sval-xyz pial --hemi lh --tval-xyz /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/mri/orig.mgz --tval /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/surf/rh.pial --reg /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/lrrev.register.dat $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /autofs/space/tanha_002/users/greve/fsdev.build/subjects cd /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage mri_surf2surf --s fsaverage --sval-xyz pial --hemi lh --tval-xyz /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/mri/orig.mgz --tval /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/surf/rh.pial --reg /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/lrrev.register.dat sysname Linux hostname compute-0-26 machine x86_64 user greve srcsubject = fsaverage srcval = (null) srctype = trgsubject = fsaverage trgval = /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/surf/rh.pial trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = (null) label-trg = (null) OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/surf/lh.sphere.reg Loading source data Reading surface file /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/surf/lh.pial Applying linear registration transform -1.00000 0.00000 0.00000 1.00000; 0.00000 1.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; Determinant of linear transform is negative, so reversing face order INFO: trgsubject = srcsubject Saving target data Reversing Face Order Fri Nov 13 11:48:44 EST 2015 mri_surf2surf --s fsaverage --sval-xyz smoothwm --hemi lh --tval-xyz /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/mri/orig.mgz --tval /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/surf/rh.smoothwm --reg /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/lrrev.register.dat $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /autofs/space/tanha_002/users/greve/fsdev.build/subjects cd /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage mri_surf2surf --s fsaverage --sval-xyz smoothwm --hemi lh --tval-xyz /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/mri/orig.mgz --tval /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/surf/rh.smoothwm --reg /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/lrrev.register.dat sysname Linux hostname compute-0-26 machine x86_64 user greve srcsubject = fsaverage srcval = (null) srctype = trgsubject = fsaverage trgval = /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/surf/rh.smoothwm trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = (null) label-trg = (null) OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/surf/lh.sphere.reg Loading source data Reading surface file /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/surf/lh.smoothwm Applying linear registration transform -1.00000 0.00000 0.00000 1.00000; 0.00000 1.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; Determinant of linear transform is negative, so reversing face order INFO: trgsubject = srcsubject Saving target data Reversing Face Order Fri Nov 13 11:48:52 EST 2015 mri_surf2surf --s fsaverage --sval-xyz sphere --hemi lh --tval-xyz /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/mri/orig.mgz --tval /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/surf/rh.sphere --reg /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/lrrev.pure.register.dat $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /autofs/space/tanha_002/users/greve/fsdev.build/subjects cd /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage mri_surf2surf --s fsaverage --sval-xyz sphere --hemi lh --tval-xyz /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/mri/orig.mgz --tval /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/surf/rh.sphere --reg /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/lrrev.pure.register.dat sysname Linux hostname compute-0-26 machine x86_64 user greve srcsubject = fsaverage srcval = (null) srctype = trgsubject = fsaverage trgval = /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/surf/rh.sphere trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = (null) label-trg = (null) OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/surf/lh.sphere.reg Loading source data Reading surface file /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/surf/lh.sphere Applying linear registration transform -1.00000 0.00000 0.00000 0.00000; 0.00000 1.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; Determinant of linear transform is negative, so reversing face order INFO: trgsubject = srcsubject Saving target data Reversing Face Order Fri Nov 13 11:49:01 EST 2015 mri_surf2surf --s fsaverage --sval-xyz inflated --hemi lh --tval-xyz /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/mri/orig.mgz --tval /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/surf/rh.inflated --reg /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/lrrev.pure.register.dat $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /autofs/space/tanha_002/users/greve/fsdev.build/subjects cd /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage mri_surf2surf --s fsaverage --sval-xyz inflated --hemi lh --tval-xyz /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/mri/orig.mgz --tval /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/surf/rh.inflated --reg /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/lrrev.pure.register.dat sysname Linux hostname compute-0-26 machine x86_64 user greve srcsubject = fsaverage srcval = (null) srctype = trgsubject = fsaverage trgval = /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/surf/rh.inflated trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = (null) label-trg = (null) OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/surf/lh.sphere.reg Loading source data Reading surface file /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/surf/lh.inflated Applying linear registration transform -1.00000 0.00000 0.00000 0.00000; 0.00000 1.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; Determinant of linear transform is negative, so reversing face order INFO: trgsubject = srcsubject Saving target data Reversing Face Order cp surf/lh.curv /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/surf/rh.curv cp surf/lh.sulc /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/surf/rh.sulc cp surf/lh.area /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/surf/rh.area cp surf/lh.thickness /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/surf/rh.thickness cp surf/lh.inflated.H /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/surf/rh.inflated.H cp surf/lh.inflated.K /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/surf/rh.inflated.K cp label/lh.aparc.annot /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/label/rh.aparc.annot cp label/lh.aparc.a2009s.annot /autofs/space/tanha_002/users/greve/fsdev.build/subjects/fsaverage/xhemi/label/rh.aparc.a2009s.annot done hemi lh