/* libpic - collection of image display and rendering routines Stephen Smith, Christian Beckmann and Matthew Webster, FMRIB Image Analysis Group Copyright (C) 1999-2009 University of Oxford */ /* Part of FSL - FMRIB's Software Library http://www.fmrib.ox.ac.uk/fsl fsl@fmrib.ox.ac.uk Developed at FMRIB (Oxford Centre for Functional Magnetic Resonance Imaging of the Brain), Department of Clinical Neurology, Oxford University, Oxford, UK LICENCE FMRIB Software Library, Release 5.0 (c) 2012, The University of Oxford (the "Software") The Software remains the property of the University of Oxford ("the University"). 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Contact details are: innovation@isis.ox.ac.uk quoting reference DE/9564. */ #ifndef __MISCPIC_h #define __MISCPIC_h #include "newimage/newimageall.h" #include #include "gd.h" namespace MISCPIC{ //template class miscpic { public: //constructor miscpic(){ nlut = 0; compare= 0; writeText=false; LR_label_flag = true; trans= -10; edgethresh = 0.0; if(getenv("FSLDIR")!=0){ lutbase = string(getenv("FSLDIR")) + "/etc/luts/"; } else{ lutbase = string("/"); } title = string(""); cbartype = string(""); cbarptr = NULL; outim = NULL; picr = NULL; picg = NULL; picb = NULL; }; ~miscpic(){ if(picr!=NULL) free(picr); if(picg!=NULL) free(picg); if(picb!=NULL) free(picb); if(cbarptr) gdImageDestroy(cbarptr); if(outim) gdImageDestroy(outim); } int slicer(const NEWIMAGE::volume& vol1,const NEWIMAGE::volume& vol2,const char *opts, bool labelSlices=false, bool debug = false); int slicer(const NEWIMAGE::volume& vol1,const NEWIMAGE::volume& vol2,vector inputOptions, bool labelSlices=false, bool debug = false); inline int slicer(const NEWIMAGE::volume& vol1, char *opts, bool labelSlices=false, bool debug = false) { NEWIMAGE::volume tmp(1,1,1); return this->slicer(vol1, tmp, opts, debug);} int write_png ( char *filename, int x_size, int y_size, unsigned char *r, unsigned char *g, unsigned char *b); int write_pgm ( char *filename, int x_size, int y_size, unsigned char *i ); int write_ppm ( char *filename, int x_size, int y_size, unsigned char *r, unsigned char *g, unsigned char *b ); void write_pic(char *fname, int width, int height); inline void set_title(string what) { title = what;} inline void set_cbar(string what) { cbartype = what;} inline void read_lut(char *fname){ lut = string(fname); this->read_lut(); } void read_lut(); inline void set_minmax(float bgmin, float bgmax, float s1min, float s1max){ this->set_minmax(bgmin, bgmax, s1min, s1max, (float)0.0, float(0.0)); }; void set_minmax(float bgmin, float bgmax, float s1min, float s1max, float s2min, float s2max); inline int overlay(NEWIMAGE::volume& newvol, NEWIMAGE::volume& bg, NEWIMAGE::volume& s1, NEWIMAGE::volume& s2, float bgmin, float bgmax, float s1min, float s1max, float s2min, float s2max, int colour_type, int checker, bool out_int = false, bool debug = false){ return this->overlay(newvol, bg, s1, s2, bgmin, bgmax, s1min, s1max, s2min, s2max, colour_type, checker, string(""), string(""), out_int, debug); } int overlay(NEWIMAGE::volume& newvol, NEWIMAGE::volume& bg, NEWIMAGE::volume& s1, NEWIMAGE::volume& s2, float bgmin, float bgmax, float s1min, float s1max, float s2min, float s2max, int colour_type, int checker, string cbarfname, string cbartype, bool out_int = false, bool debug = false); private: int x_size, y_size, z_size, size, x_size_pic, y_size_pic, z_size_pic, nlut, compare, trans; bool debug, LR_label_flag, writeText; float edgethresh; string lut, lutbase, title, cbartype; gdImagePtr cbarptr, outim; vector rlut, glut, blut; //stores the lut; unsigned char *picr, *picg, *picb; //volume inp1, inp2, imr, img, imb; NEWIMAGE::volume inp1, inp2, imr, img, imb; vector minmax; //will store min and max values for bg and stats images //needed for colorbar void sag(float xx, int p, int width); void cor(float yy, int p, int width); void axi(float zz, int p, int width); int create_cbar(string cbartype); int write_cbar(string fname, string cbartype); int add_cbar(string cbartype); int add_title(int width); void addRlabel(int p, int width, int size_pic, int alt_size_pic, bool onleft); void addRlabel(unsigned char* picr, int p, int width, int size_pic, int alt_size_pic, bool onleft); }; } #endif