include $(FSLCONFDIR)/default.mk PROJNAME = feat5 USRINCFLAGS = -I${INC_NEWMAT} -I${INC_PROB} -I${INC_ZLIB} -I${INC_GD} -I${INC_GDC} -I${INC_PNG} USRLDFLAGS = -L${LIB_NEWMAT} -L${LIB_PROB} -L${LIB_ZLIB} -L${LIB_GD} -L${LIB_GDC} -L${LIB_PNG} IOLIBS = -lfslio -lniftiio -lznz LIBS = -lnewimage -lmiscplot -lmiscpic -lmiscmaths -lprob -lnewmat -lutils $(IOLIBS) -lm -lz -lgdc -lgd -lpng XFILES = cutoffcalc feat_model tsplot prewhiten generateConfounds popp pnm_evs RUNTCLS = Feat Renderhighres Featquery Glm Pnm SCRIPTS = easythresh feat mccutup renderhighres featregapply featquery fslerrorreport invfeatreg updatefeatreg estnoise perfusion_subtract match_smoothing fsl_motion_outliers feat_gm_prepare mp_diffpow.sh pnm_stage1 mainfeatreg checkFEAT setFEAT autoaq all: ${XFILES} defaultfiles defaultfiles: @if [ ! -d ${DESTDIR}/etc ] ; then ${MKDIR} ${DESTDIR}/etc ; ${CHMOD} g+w ${DESTDIR}/etc ; fi ${CP} -rf default_flobs.flobs ${DESTDIR}/etc @if [ ! -d ${DESTDIR}/etc/fslconf ] ; then ${MKDIR} ${DESTDIR}/etc/fslconf ; ${CHMOD} g+w ${DESTDIR}/etc/fslconf ; fi ${CP} -f featconf ${DESTDIR}/etc/fslconf/feat.tcl featlib.o: featlib.cc featlib.h $(CXX) $(CXXFLAGS) -c -o featlib.o featlib.cc generateConfounds: generateConfounds.cc $(CXX) $(CXXFLAGS) -o generateConfounds generateConfounds.cc $(LDFLAGS) $(LIBS) tsplot: tsplot.cc featlib.o featlib.h $(CXX) $(CXXFLAGS) -o tsplot featlib.o tsplot.cc $(LDFLAGS) $(LIBS) prewhiten: prewhiten.cc featlib.o featlib.h $(CXX) $(CXXFLAGS) -o prewhiten featlib.o prewhiten.cc $(LDFLAGS) $(LIBS) cutoffcalc: cutoffcalc.cc $(CXX) $(CXXFLAGS) -o cutoffcalc cutoffcalc.cc $(LDFLAGS) $(LIBS) feat_model: feat_model.cc featlib.o $(CXX) $(CXXFLAGS) -o feat_model featlib.o feat_model.cc $(LDFLAGS) $(LIBS) pnm_evs: pnm_evs.cc $(CXX) $(CXXFLAGS) -o pnm_evs pnm_evs.cc $(LDFLAGS) $(LIBS) popp: popp.cc $(CXX) $(CXXFLAGS) -o popp popp.cc $(LDFLAGS) $(LIBS)