mri_ca_register
mri_ca_register <invol> <template> <outvol>
This generates a multi-dimensional talairach transform from a gca file and talairach.lta file
| Argument | Explanation |
|---|---|
| invol | input volume |
| template | template in gca format |
| outvol | output volume in m3d format |
| Argument | Explanation |
|---|---|
| -tol | defines convergence of registration |
| -mask | specifies volume to use as a mask |
| -T | transform in lta format |
| -level | defines how many surrounding voxels will be used in interpolations, default is 6 |
| -ri | allows reading of multiple intensity normalization |
| -align | |
| -invert-and-save gcamfile | |
| -dist distance | |
| -regularize regularize | |
| -regularize-mean regularizemean | |
| -scale_smoothness smoothness | |
| -nobright | |
| -renormalize | |
| -read_lta | |
| -smoothness smoothness | |
| -samples samples | |
| -nsmall nsmall | |
| -fixed | |
| -optimal | |
| -noneg noneg | |
| -wm | |
| -min_avgs <n> | |
| -tl | |
| -relabel relable | |
| -relabel_avgs relable_avgs | |
| -reset_avgs reset_avgs | |
| -vf vf_fname | |
| -diag diagfname | |
| -tr tr | |
| -te te | |
| -example T1 seg | |
| -<no>bigventricles | |
| -uncompress | |
| -secondpassrenorm |
| Output | Explanation |
|---|---|
| outvol | multidimensional transform in m3d format |
mri_ca_register -levels 6 -mask subject1/mri/brain -T subject1/mri/transforms/talairach_one.lta subject1/mri/norm_one.mgh single_one.gca subject1/mri/transforms/talairach_one.m3d
mri_ca_register -tol 1 -mask subject1/mri/brain -T subject1/mri/transforms/talairach_multi.lta subject1/mri/norm_multi.mgh multi_one.gca subject1/mri/transforms/talairach_multi.m3d
None
Report bugs to <freesurfer@nmr.mgh.harvard.edu>
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