mri_ca_register
mri_ca_register <invol> <template> <outvol>
This generates a multi-dimensional talairach transform from a gca file and talairach.lta file
Argument | Explanation |
---|---|
invol | input volume |
template | template in gca format |
outvol | output volume in m3d format |
Argument | Explanation |
---|---|
-tol | defines convergence of registration |
-mask | specifies volume to use as a mask |
-T | transform in lta format |
-level | defines how many surrounding voxels will be used in interpolations, default is 6 |
-ri | allows reading of multiple intensity normalization |
-align | |
-invert-and-save gcamfile | |
-dist distance | |
-regularize regularize | |
-regularize-mean regularizemean | |
-scale_smoothness smoothness | |
-nobright | |
-renormalize | |
-read_lta | |
-smoothness smoothness | |
-samples samples | |
-nsmall nsmall | |
-fixed | |
-optimal | |
-noneg noneg | |
-wm | |
-min_avgs <n> | |
-tl | |
-relabel relable | |
-relabel_avgs relable_avgs | |
-reset_avgs reset_avgs | |
-vf vf_fname | |
-diag diagfname | |
-tr tr | |
-te te | |
-example T1 seg | |
-<no>bigventricles | |
-uncompress | |
-secondpassrenorm |
Output | Explanation |
---|---|
outvol | multidimensional transform in m3d format |
mri_ca_register -levels 6 -mask subject1/mri/brain -T subject1/mri/transforms/talairach_one.lta subject1/mri/norm_one.mgh single_one.gca subject1/mri/transforms/talairach_one.m3d
mri_ca_register -tol 1 -mask subject1/mri/brain -T subject1/mri/transforms/talairach_multi.lta subject1/mri/norm_multi.mgh multi_one.gca subject1/mri/transforms/talairach_multi.m3d
None
Report bugs to <freesurfer@nmr.mgh.harvard.edu>
*****************************************************************************