Diff for "FsTutorial/April2011CourseSchedule"

Differences between revisions 5 and 6

FreeSurfer Course, April 4 and 5, 2010

MGH, Charlestown Navy Yard, Building 149, Conference Room A

Monday, April 4th - Introduction / Single Subject / MRI / Longitudinal/ Troubleshooting

Time	Title	Type	Lecturer
8:00 - 8:30	optional - Unix Tutorial for FreeSurfer Users 1. Surrey, 2. O'Reilly	tutorial	Allison Stevens
8:30 - 9:00	optional - Intro to FreeSurfer Jargon	talk	Allison Stevens
8:30 - 9:00	Course Registration	sign-in	staff
9:00 - 9:30	Introduction to Freesurfer	talk	Bruce Fischl
9:30 - 10:30	Analyzing the Individual Subject	talk	Doug Greve
10:30 - 10:45	break
10:45 - 11:15	Tkmedit/Tksurfer demonstration	demo	Doug Greve
11:15 - 11:45	Interaction with Individual Subject Data Tutorial	tutorial	staff
11:45- 12:15	Failure Modes	talk	Bruce Fischl
12:15 - 1:15	Lunch	--	--
12:45 - 1:15	Optional Lunch Talk- Intro to MR	talk	Dylan Tisdall
1:15 - 2:15	Troubleshooting Demonstration, Troubleshooting Tutorial	tutorial	staff, Allison
2:15 - 2:45	Surface-based Smoothing/Surface-based Registration	talk	Doug Greve
2:45 - 3:15	FreeSurfer Applications	talk	David Salat
3:15 - 3:30	break
3:30 - 4:15	Registration	talk	Lilla Zollei
4:15 - 4:45	Longitudinal FreeSurfer see also: LongitudinalProcessing	talk	Martin Reuter
4:45 - 5:30	Longitudinal tutorial; checking recon-all.log of failed subject; how to report bugs/ask questions on list; *anything that needs to be done to finish use case	tutorial	staff
5:30 -	optional - FreeSurfer Installation on Personal Laptops	one-on-one	Nick Schmansky
5:30 -	optional - Start Processing Your Own Data	one-on-one	Allison Stevens

Tuesday, April 5th - Group Analysis/ ROIs / Registration / Diffusion

Time	Title	Type	Lecturer
8:15 - 9:00	Quality Checking a Recon	demo	Allison Stevens
9:00 - 11:00	Introduction to Diffusion Processing	talk	Lilla Zollei
11:00 - 11:15	break
11:15 - 11:45	TRActs Constrained by UnderLying Anatomy (TRACULA)	talk	Anastasia Yendiki
11:45 - 12:45	Diffusion Tutorial	tutorial	staff
12:45 - 1:45	Lunch	--	--
1:15 - 1:45	Optional Lunch Talk- MRI Acquisition Methods for Morphometry	talk	Andre van der Kouwe
1:45 - 2:45	ROI Analysis	talk	Doug Greve
2:45 - 3:15	ROI Analysis Tutorial	tutorial	staff
3:15 - 3:30	break
3:30 - 4:30	Group Analysis / GLM / Multiple Comparisons	talk	Mert Sabuncu
4:30 - 5:00	QDEC demonstration	demo	Nick Schmansky
5:00 - 6:00	Group Analysis / Multiple Comparisons - mri_glmfit Tutorial	tutorial	staff
5:00 - 6:00	Group Analysis - qdec Tutorial	tutorial	staff

8:30 - 9:45	FSFAST	talk	Doug Greve
9:45 - 10:00	break
10:00 - 11:00	FSFAST	talk	Doug Greve
11:00 - 12:00	FSFAST	tutorial	staff
12:00 - 1:00	Lunch	--	--
12:40 - 1:00	Optional Lunch Talk- Motion-compensated neuroanatomical imaging	talk	Dylan Tisdall
1:00 - 1:30	Accuracy, Reliability and Validation	talk	David Salat
1:30 - 1:50	Future Directions: Inferring architectonic boundaries from in-vivo MRI	talk	Bruce Fischl
1:50 - 2:15	break Evaluation
2:15 - 3:30	Multi-Modal Integration	talk	Doug Greve
3:30 - 4:30	Multi-Modal Integration Tutorial	tutorial	staff
4:30 - 5:00	Question and Answer Session, FsQuiz	talk	staff

FsTutorial/April2011CourseSchedule (last edited 2011-04-06 12:35:21 by AllisonStevens)

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+||'''Time''' ||'''Title''' ||'''Type''' ||'''Lecturer''' ||

||8:00 - 8:30 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/unix_tutorial_FS_course.ppt|Unix Tutorial for FreeSurfer Users]] [[http://www.ee.surrey.ac.uk/Teaching/Unix|1. Surrey]], [[http://docstore.mik.ua/orelly/linux/lnut/index.htm|2. O'Reilly]] ||tutorial ||Allison Stevens ||

||8:30 - 9:00 ||'''optional -''' Intro to !FreeSurfer Jargon ||talk ||Allison Stevens ||

||8:30 - 9:00 ||'''Course Registration''' ||sign-in ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/boston_fs_course_jan2009.jpg|staff]] ||

||9:00 - 9:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.intro.ppt|Introduction to Freesurfer]] ||talk ||Bruce Fischl ||

||9:30 - 10:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsrecon.ppt|Analyzing the Individual Subject]] ||talk ||Doug Greve ||

||10:30 - 10:45 ||'''break''' || || ||

||10:45 - 11:15 ||Tkmedit/Tksurfer demonstration ||demo ||Doug Greve ||

||11:15 - 11:45 ||[[FsTutorial/OutputData|Interaction with Individual Subject Data Tutorial]] ||tutorial ||staff ||

||11:45- 12:15 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.failure_modes.ppt|Failure Modes]] ||talk ||Bruce Fischl ||

||12:15 - 1:15 ||'''Lunch''' ||-- ||-- ||

||''12:45 - 1:15'' ||''Optional Lunch Talk''- '' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_acquisition.ppt|Intro to MR]] '' ||''talk'' ||''Dylan Tisdall'' ||

||1:15 - 2:15 ||Troubleshooting Demonstration, [[FsTutorial/TroubleshootingData|Troubleshooting Tutorial]] ||tutorial ||staff, Allison ||

||2:15 - 2:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.surface-based-analysis.ppt|Surface-based Smoothing/Surface-based Registration]] ||talk ||Doug Greve ||

||2:45 - 3:15 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.applications.ppt|FreeSurfer Applications]] ||talk || David Salat ||

||3:15 - 3:30 ||'''break''' || || ||

||3:30 - 4:15 || Registration || talk || Lilla Zollei ||

||4:15 - 4:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.ppt|Longitudinal FreeSurfer]] ''see also:'' LongitudinalProcessing ||talk ||Martin Reuter ||

||4:45 - 5:30 ||Longitudinal tutorial; checking recon-all.log of failed subject; how to report bugs/ask questions on list; <<BR>>*anything that needs to be done to finish use case ||tutorial ||staff ||

||5:30 - ||'''optional -''' [[DownloadAndInstall|FreeSurfer Installation on Personal Laptops]] ||one-on-one ||Nick Schmansky ||

||5:30 - ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/runningyourdata.ppt|Start Processing Your Own Data]] ||one-on-one ||Allison Stevens ||
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-|| '''Time''' || '''Title''' || '''Type''' || '''Lecturer''' ||

|| 8:00 - 8:30 || '''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/unix_tutorial_FS_course.ppt|Unix Tutorial for FreeSurfer Users|&do=get]] [[http://www.ee.surrey.ac.uk/Teaching/Unix|1. Surrey]], [[http://docstore.mik.ua/orelly/linux/lnut/index.htm|2. O'Reilly]]  || tutorial || Allison Stevens ||

|| 8:30 - 9:00 || '''optional -''' Intro to !FreeSurfer Jargon || talk || Allison Stevens ||

|| 8:30 - 9:00 || '''Course Registration''' || sign-in || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/boston_fs_course_jan2009.jpg|staff|&do=get]] ||

|| 9:00 - 9:30 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.intro.ppt|Introduction to Freesurfer|&do=get]]|| talk || Bruce Fischl ||

|| 9:30 - 10:30 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsrecon.ppt|Analyzing the Individual Subject|&do=get]] || talk|| Doug Greve ||

|| 10:30 - 10:45 || '''break''' || || ||

|| 10:45 - 11:15  || Tkmedit/Tksurfer demonstration || demo || Doug Greve ||

|| 11:15 - 11:45 || [[FsTutorial/OutputData|Interaction with Individual Subject Data Tutorial]] || tutorial || staff ||

|| 11:45 - 12:15 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.surface-based-analysis.ppt|Surface-based Smoothing/Surface-based Registration|&do=get]] || talk || Doug Greve ||

|| 12:15 - 1:15 || '''Lunch''' || -- || -- ||

|| ''12:30 - 1:00'' || ''Optional Lunch Talk''- '' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.applications.ppt|FreeSurfer Applications|&do=get]]'' || ''talk'' || ''David Salat''||

|| 1:15 - 1:45 ||  [[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_acquisition.ppt|Intro to MR|&do=get]] || talk || Dylan Tisdall ||

|| 1:45 - 2:30 ||  [[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_acquisition.ppt|MRI Acquisition Methods for Morphometry|&do=get]] || talk || Andre van der Kouwe ||

|| 2:30 - 2:45 || '''break''' || || ||

|| 2:45 - 3:15 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.ppt|Longitudinal FreeSurfer|&do=get]] ''see also:'' LongitudinalProcessing|| talk || Martin Reuter ||

|| 3:15 - 4:00 || Longitudinal tutorial; checking recon-all.log of failed subject; how to report bugs/ask questions on list; <<BR>>*anything that needs to be done to finish use case || tutorial || staff ||

|| 4:00 - 4:30 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.failure_modes.ppt|Failure Modes|&do=get]] || talk || Bruce Fischl||

|| 4:30 - 5:30 || Troubleshooting Demonstration, [[FsTutorial/TroubleshootingData|Troubleshooting Tutorial]]|| tutorial || staff, Allison ||

|| 5:30 - || '''optional -''' [[DownloadAndInstall|FreeSurfer Installation on Personal Laptops]] || one-on-one || Nick Schmansky  ||

|| 5:30 - || '''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/runningyourdata.ppt|Start Processing Your Own Data|&do=get]]|| one-on-one || Allison Stevens ||
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-|| '''Time''' || '''Title''' || '''Type''' || '''Lecturer''' ||

|| 8:15 - 9:00 || Quality Checking a Recon || demo || Allison Stevens ||

|| 9:00 - 10:00 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.groupanalysis.ppt|Group Analysis / GLM / Multiple Comparisons|&do=get]] || talk || Mert Sabuncu ||

|| 10:00 - 11:00 || [[FsTutorial/GroupAnalysis|Group Analysis / Multiple Comparisons - mri_glmfit Tutorial]] || tutorial || staff ||

|| 11:00 - 11:15 || '''break''' || || ||

|| 11:15 - 11:45 || QDEC demonstration || demo || Nick Schmansky ||

|| 11:45 - 12:30 || [[FsTutorial/QdecGroupAnalysis|Group Analysis - qdec Tutorial]] || tutorial || staff ||

|| 12:30 - 1:30 || '''Lunch''' || -- || -- ||

|| ''12:45 - 1:15'' || ''Optional Lunch Talk''- ''Which What to Register'' || ''talk'' || ''Lilla Zollei''||

|| 1:30 - 2:30 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.roi.ppt|ROI Analysis|&do=get]] || talk || Doug Greve ||

|| 2:30 - 3:00 || [[FsTutorial/AnatomicalROI|ROI Analysis Tutorial]] || tutorial || staff ||

|| 3:00 - 3:30 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/CVS-lzollei.ppt|Combined Volume and Surface Registration|&do=get]] || talk || Lilla Zollei ||

|| 3:30 - 3:45 || '''break''' || || ||

|| 3:45 - 4:15 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.dt_recon-intro.ppt|Introduction to Diffusion Processing|&do=get]] || talk || Lilla Zollei ||

|| 4:15 - 5:15 || Diffusion Tutorial || tutorial || staff ||

|| 5:15 - 5:35 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/tracula,fs.ppt|TRActs Constrained by UnderLying Anatomy (TRACULA)|&do=get]] || talk || Anastasia Yendiki ||

|| 5:35 - || '''optional -''' [[DownloadAndInstall|FreeSurfer Installation on Personal Laptops]] || one-on-one || Nick Schmansky  ||

|| 5:35 - || '''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/runningyourdata.ppt|Start Processing Your Own Data|&do=get]]|| one-on-one || Allison Stevens ||
+||'''Time''' ||'''Title''' ||'''Type''' ||'''Lecturer''' ||

||8:15 - 9:00 ||Quality Checking a Recon ||demo ||Allison Stevens ||

||9:00 - 11:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.dt_recon-intro.ppt|Introduction to Diffusion Processing]] ||talk ||Lilla Zollei ||

||11:00 - 11:15 ||'''break''' || || ||

||11:15 - 11:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/tracula,fs.ppt|TRActs Constrained by UnderLying Anatomy (TRACULA)]] ||talk ||Anastasia Yendiki ||

||11:45 - 12:45 ||Diffusion Tutorial ||tutorial ||staff ||

||12:45 - 1:45 ||'''Lunch''' ||-- ||-- ||

||''1:15 - 1:45'' ||''Optional Lunch Talk''- ''[[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_acquisition.ppt|MRI Acquisition Methods for Morphometry]]'' ||''talk'' ||''Andre van der Kouwe'' ||

||1:45 - 2:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.roi.ppt|ROI Analysis]] ||talk ||Doug Greve ||

||2:45 - 3:15 ||[[FsTutorial/AnatomicalROI|ROI Analysis Tutorial]] ||tutorial ||staff ||

||3:15 - 3:30 ||'''break''' || || ||

||3:30 - 4:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.groupanalysis.ppt|Group Analysis / GLM / Multiple Comparisons]] ||talk ||Mert Sabuncu ||

||4:30 - 5:00 ||QDEC demonstration ||demo ||Nick Schmansky ||

||5:00 - 6:00 ||[[FsTutorial/GroupAnalysis|Group Analysis / Multiple Comparisons - mri_glmfit Tutorial]] ||tutorial ||staff ||

||5:00 - 6:00 ||[[FsTutorial/QdecGroupAnalysis|Group Analysis - qdec Tutorial]] ||tutorial ||staff ||
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-|| 8:30 - 9:45 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.multimodal-integration.ppt|Multi-Modal Integration|&do=get]] || talk || Doug Greve ||

|| 9:45 - 10:45 || [[FsTutorial/MultiModal|Multi-Modal Integration Tutorial]] || tutorial || staff ||

|| 10:45 - 11:00 || '''break''' || || ||

|| 11:00 - 11:30 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.reliability.ppt|Accuracy, Reliability and Validation|&do=get]] || talk || David Salat ||

|| 11:30 - 12:30 || '''Lunch''' || -- || -- ||

|| 12:10 - 12:30 || ''Optional Lunch Talk''- ''[[http://surfer.nmr.mgh.harvard.edu/pub/docs/tisdall_moco.pdf|Motion-compensated neuroanatomical imaging|&do=get]]'' || ''talk'' || ''Dylan Tisdall'' ||

|| 12:30 - 12:50 || Future Directions: [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.inferring_architectonics.ppt|Inferring architectonic boundaries from in-vivo MRI|&do=get]] || talk || Bruce Fischl ||

|| 12:50 - 2:15 || FSFAST || talk || Doug Greve ||

|| 2:15 - 2:30 || '''break''' || || ||

|| 2:30 - 3:30 || FSFAST || talk || Doug Greve ||

|| 3:30 - 4:30 || FSFAST || tutorial || staff ||

|| 4:30 - 5:15 || Question and Answer Session, FsQuiz || talk || staff ||
+||8:30 - 9:45 ||FSFAST ||talk ||Doug Greve ||

||9:45 - 10:00 ||'''break''' || || ||

||10:00 - 11:00 ||FSFAST ||talk ||Doug Greve ||

||11:00 - 12:00 ||FSFAST ||tutorial ||staff ||

||12:00 - 1:00 ||'''Lunch''' ||-- ||-- ||

||''12:40 - 1:00'' ||''Optional Lunch Talk''- ''[[http://surfer.nmr.mgh.harvard.edu/pub/docs/tisdall_moco.pdf|Motion-compensated neuroanatomical imaging]]'' ||''talk'' ||''Dylan Tisdall'' ||

||1:00 - 1:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.reliability.ppt|Accuracy, Reliability and Validation]] ||talk ||David Salat ||

||1:30 - 1:50 ||Future Directions: [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.inferring_architectonics.ppt|Inferring architectonic boundaries from in-vivo MRI]] ||talk ||Bruce Fischl ||

||1:50 - 2:15 ||'''break'''  Evaluation || || ||

||2:15 - 3:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.multimodal-integration.ppt|Multi-Modal Integration]] ||talk ||Doug Greve ||

||3:30 - 4:30 ||[[FsTutorial/MultiModal|Multi-Modal Integration Tutorial]] ||tutorial ||staff ||

||4:30 - 5:00 ||Question and Answer Session, FsQuiz ||talk ||staff ||

FreeSurfer Course, April 4 and 5, 2010

MGH, Charlestown Navy Yard, Building 149, Conference Room A

Monday, April 4th - Introduction / Single Subject / MRI / Longitudinal/ Troubleshooting

Tuesday, April 5th - Group Analysis/ ROIs / Registration / Diffusion

Wednesday, April 6th - Multi-Modal / Future Directions / fMRI / Q&A