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* Indicates an optional technical talk. These talks have great content. They are related to, but not directly about, the !FreeSurfer processing stream. <<BR>> ** Indicates an optional talk that covers basic/beginner material. <<BR>> *** Indicates optional extra time to work on tutorials and/or ask questions about your own data. | * Indicates an optional technical talk. These talks have great content. They are related to, but not directly about, the !FreeSurfer processing stream. <<BR>> ** Indicates an optional talk that covers basic/beginner material. <<BR>> *** Indicates optional extra time to work on tutorials and/or ask questions about your own data. <<BR>> <<BR>> Current staff members can be found on our [[https://www.martinos.org/lab/lcn/people|website]]. |
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||8:30 - 9:00 ||** [[http://surfer.nmr.mgh.harvard.edu/pub/docs/Unix_MF.pptx|Intro to Linux for FreeSurfer Users]] ||talk/demo || Andrew Hoopes|| ||9:00 - 9:15 ||** [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsjargon_clean.pptx|Intro to FreeSurfer Jargon]] ||talk || Caroline Magnain || ||9:15 - 9:30 ||'''break''' || || || ||9:30 - 10:15 ||[[attachment:freesurfer.intro.apr.2019.ppt|Introduction to Freesurfer]] ||talk ||Bruce Fischl || ||10:15 - 11:25 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsrecon.pptx|Analyzing the Individual Subject]] ||talk ||Doug Greve || ||11:25 - 11:45 ||'''break''' || || || ||11:45 - 12:00 ||[[https://www.youtube.com/watch?v=Mv-ECowxq2o|Freeview demonstration]] ||[[FsTutorial/FreeviewDemo|demo]] || Bram Diamond || ||12:00 - 12:30 ||[[FsTutorial/OutputData_freeview|Introduction to FreeSurfer Output]] ||tutorial ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/staff2013.jpg|staff]] || ||12:30 - 1:30 ||'''Lunch''' [[https://surfer.nmr.mgh.harvard.edu/fswiki/CourseDescription?action=AttachFile&do=get&target=CourseMap.jpg|(Suggestions for where to eat)]] ||-- ||-- || ||1:30 - 1:45 ||[[FsTutorial/OutputData_freeview|Introduction to FreeSurfer Output]] ||tutorial ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/staff2013.jpg|staff]] || ||1:45 - 2:15 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.surface-based-analysis.ppt |Surface-based Analysis: Intersubject Registration & Smoothing]] ||talk || Iman Aganj || |
||8:30 - 8:45 ||** [[http://surfer.nmr.mgh.harvard.edu/pub/docs/Unix_MF.pptx|Intro to Linux for FreeSurfer Users]] ||talk/demo || || ||8:45 - 9:15 ||** [[http://surfer.nmr.mgh.harvard.edu/pub/docs/Unix_MF.pptx|Unix for FreeSurfer Users]] ||tutorial || || ||9:15 - 9:30 ||** [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsjargon_clean.pptx|Intro to FreeSurfer Jargon]] || talk || Caroline Magnain || ||9:30 - 9:45 ||'''break''' || || || ||9:45 - 10:00 ||[[attachment:freesurfer.intro.apr.2019.ppt|Introduction to Freesurfer]] ||talk ||Bruce Fischl || ||10:00 - 11:10 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsrecon.pptx|Analyzing the Individual Subject]] ||talk ||Doug Greve || ||11:10 - 11:30 ||'''break''' || || || ||11:30 - 11:45 ||[[https://www.youtube.com/watch?v=Mv-ECowxq2o|Freeview demonstration]] ||[[FsTutorial/FreeviewDemo|demo]] || Bram Diamond || ||11:45 - 12:30 ||[[FsTutorial/OutputData_freeview|Introduction to FreeSurfer Output]] ||tutorial ||staff || ||12:30 - 1:30 ||'''Lunch''' [[https://surfer.nmr.mgh.harvard.edu/fswiki/CourseDescription?action=AttachFile&do=get&target=CourseMap.jpg|(Suggestions for where to eat)]] |||||| ||1:30 - 1:45 ||[[FsTutorial/OutputData_freeview|Introduction to FreeSurfer Output]] ||tutorial ||staff || ||1:45 - 2:15 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.surface-based-analysis.ppt |Surface-based Analysis: Intersubject Registration & Smoothing ]] ||talk || || |
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||2:35 - 3:05 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.roi.EB_wiki.pptx|ROI Analysis]] ||talk || || | ||2:35 - 3:05 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.roi.EB_wiki.pptx|ROI Analysis]] ||talk || Matthew Vera || |
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||8:00 - 9:00 ||*** Optional session, extra support for structural processing and ROI analysis||-- || Research Techs || ||9:00 - 9:50 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/GLM.pptx|Group Analysis]] ||talk || Viviana Siless || ||9:50 - 10:30 ||[[FsTutorial/GroupAnalysisV6.0|Group Analysis Tutorial]] ||tutorial ||staff || ||10:30 - 10:50 ||'''break''' || || || ||10:50 - 11:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/multiplecomparisons.ppt|Multiple Comparisons]] ||talk ||Doug Greve || ||11:30 - 12:00 ||[[FsTutorial/MultipleComparisonsV6.0Perm|Multiple Comparisons Tutorial]] ||tutorial ||staff || ||12:00 - 1:00 ||'''Lunch''' ||-- ||-- || ||1:00 - 1:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.troubleshooting.apr2019.ppt|FreeSurfer Troubleshooting]] ||talk ||Bruce Fischl || ||1:45 - 2:45 ||[[FsTutorial/TroubleshootingDataV6.0|Troubleshooting Tutorial]] ||tutorial ||staff || ||2:45 - 3:05 ||'''break''' || || || ||3:05 - 4:05 ||[[https://youtu.be/AR83_Bt04VQ|Quality Checking a Recon]] ||demo ||Leah Morgan, Allison Stevens|| ||4:05 - 4:50 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.longitudinal.pptx|Longitudinal FreeSurfer]] ||talk || Malte Hoffmann || ||4:50 - 5:30 || [[FsTutorial/LongitudinalTutorial|LongitudinalTutorial]] ||tutorial ||staff || |
||8:00 - 9:00 ||*** Morning Help Session|| || Research Techs || ||9:00 - 9:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/GLM.pptx|Group Analysis]] ||talk || Viviana Siless || ||9:45 - 10:25 ||[[FsTutorial/GroupAnalysisV6.0|Group Analysis Tutorial]] ||tutorial ||staff || ||10:25 - 10:45 ||'''break''' || || || ||10:45 - 11:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.troubleshooting.apr2019.ppt|FreeSurfer Troubleshooting]] ||talk ||Bruce Fischl || ||11:30 - 12:30 ||[[FsTutorial/TroubleshootingDataV6.0|Troubleshooting Tutorial]] ||tutorial ||staff || ||12:30 - 1:30 ||'''Lunch''' || || || ||1:30 - 2:15 ||[[https://youtu.be/AR83_Bt04VQ|Quality Checking a Recon]] ||talk ||Leah Morgan, Allison Stevens || ||2:15 - 2:55 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/multiplecomparisons.ppt|Multiple Comparisons]] ||talk ||Doug Greve|| ||2:55 - 3:25 ||[[FsTutorial/MultipleComparisonsV6.0Perm|Multiple Comparisons Tutorial]] ||tutorial ||staff || ||3:25 - 4:05 ||'''break''' || || || ||4:05 - 4:50 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.longitudinal.pptx|Longitudinal FreeSurfer]] ||talk ||Malte Hoffmann || ||4:50 - 5:30 || [[FsTutorial/LongitudinalTutorial|LongitudinalTutorial]] ||tutorial ||Malte Hoffmann || |
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||8:00 - 9:00 ||*** Optional session, extra support for questions on longitudinal processing and working with pediatric data ||-- ||Lilla Zöllei, other staff|| | ||8:00 - 9:00 ||*** Morning Help Session || ||Research Techs || |
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||1:30 - 2:20 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/tracula,fs.ppt|TRActs Constrained by UnderLying Anatomy (TRACULA)]] ||talk ||Anastasia Yendiki || ||2:20 - 3:20 ||[[FsTutorial/Tracula|Tracula Tutorial]] ||tutorial ||staff || |
||1:30 - 2:20 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/tracula,fs.ppt|Tracts Constrained by UnderLying Anatomy (TRACULA)]] ||talk ||Anastasia Yendiki || ||2:20 - 3:20 ||[[FsTutorial/Tracula|TRACULA Tutorial]] ||tutorial ||staff || |
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||4:50 - 5:30 ||* [[attachment:fs-cloud-prsentation_20190403.pdf|Running FreeSurfer in the cloud with AWS batch]] || talk || Paul Wighton|| | ||4:50 - 5:30 ||** MRI Acquisition Methods || talk ||Andre van der Kouwe|| |
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||8:00 - 9:00 ||*** Optional session, extra support for fMRI and Diffusion Questions ||-- ||staff|| | ||8:00 - 9:00 ||*** Morning Help Session || ||Research Techs|| |
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||12:00 - 1:00 ||'''Lunch''' ||-- ||-- || | ||12:00 - 1:00 ||'''Lunch''' || || || |
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||4:30 - 5:00 ||Question & Answer Session ||-- ||staff || | ||4:30 - 5:00 ||Question & Answer Session || ||staff || |
Fall 2019 FreeSurfer Course: September 23rd - 26th
8:00 - 9:30am Registration Desk Open
* Indicates an optional technical talk. These talks have great content. They are related to, but not directly about, the FreeSurfer processing stream.
** Indicates an optional talk that covers basic/beginner material.
*** Indicates optional extra time to work on tutorials and/or ask questions about your own data.
Current staff members can be found on our website.
Monday, September 23rd - Introduction / Single Subject Analysis / ROI Analysis
Time |
Title |
Type |
Lecturer |
8:30 - 8:45 |
talk/demo |
|
|
8:45 - 9:15 |
tutorial |
|
|
9:15 - 9:30 |
talk |
Caroline Magnain |
|
9:30 - 9:45 |
break |
|
|
9:45 - 10:00 |
talk |
Bruce Fischl |
|
10:00 - 11:10 |
talk |
Doug Greve |
|
11:10 - 11:30 |
break |
|
|
11:30 - 11:45 |
Bram Diamond |
||
11:45 - 12:30 |
tutorial |
staff |
|
12:30 - 1:30 |
|||
1:30 - 1:45 |
tutorial |
staff |
|
1:45 - 2:15 |
Surface-based Analysis: Intersubject Registration & Smoothing |
talk |
|
2:15 - 2:35 |
break |
|
|
2:35 - 3:05 |
talk |
Matthew Vera |
|
3:05 - 3:50 |
tutorial |
staff |
|
3:50 - 4:20 |
talk |
David Salat |
|
4:20 - 4:50 |
tutorial |
staff |
Answers to online questions here
Tuesday, September 24th - Group Analysis / Longitudinal Analysis / Troubleshooting
Time |
Title |
Type |
Lecturer |
8:00 - 9:00 |
*** Morning Help Session |
|
Research Techs |
9:00 - 9:45 |
talk |
Viviana Siless |
|
9:45 - 10:25 |
tutorial |
staff |
|
10:25 - 10:45 |
break |
|
|
10:45 - 11:30 |
talk |
Bruce Fischl |
|
11:30 - 12:30 |
tutorial |
staff |
|
12:30 - 1:30 |
Lunch |
|
|
1:30 - 2:15 |
talk |
Leah Morgan, Allison Stevens |
|
2:15 - 2:55 |
talk |
Doug Greve |
|
2:55 - 3:25 |
tutorial |
staff |
|
3:25 - 4:05 |
break |
|
|
4:05 - 4:50 |
talk |
Malte Hoffmann |
|
4:50 - 5:30 |
tutorial |
Malte Hoffmann |
|
5:30 - 7:30 |
Social Night in the atrium of Bldg. 149 |
Snacks and Beverages Served |
you! |
Answers to online questions here
Wednesday, September 25th - Multimodal Analysis / Diffusion Analysis / fMRI Analysis / MR Acquisition
Time |
Title |
Type |
Lecturer |
8:00 - 9:00 |
*** Morning Help Session |
|
Research Techs |
9:00 - 9:30 |
** Intro to MR (SpinBench) |
talk |
Robert Frost |
9:30 - 10:00 |
talk |
Aina Frau-Pascual |
|
10:00 - 10:30 |
tutorial |
staff |
|
10:30 - 10:50 |
break |
|
|
10:50 - 11:05 |
talk |
Robert Frost |
|
11:05 - 11:45 |
talk |
Anastasia Yendiki |
|
11:45 - 12:30 |
tutorial |
staff |
|
12:30 - 1:30 |
Lunch |
-- |
-- |
1:30 - 2:20 |
talk |
Anastasia Yendiki |
|
2:20 - 3:20 |
tutorial |
staff |
|
3:20 - 3:40 |
break |
|
|
3:40 - 3:50 |
talk |
Anastasia Yendiki |
|
3:50 - 4:50 |
talk |
Jingyuan Chen |
|
4:50 - 5:30 |
** MRI Acquisition Methods |
talk |
Andre van der Kouwe |
Answers to online questions here
The FreeSurfer Evaluation is here!
Thursday, September 26th - fMRI Analysis / Multimodal Analysis / Future Directions
Time |
Title |
Type |
Lecturer |
8:00 - 9:00 |
*** Morning Help Session |
|
Research Techs |
9:00 - 9:30 |
talk |
Doug Greve |
|
9:30 - 10:00 |
tutorial |
staff |
|
10:00 - 10:20 |
break & Evaluation |
|
|
10:20 - 11:20 |
talk |
Doug Greve |
|
11:20 - 12:00 |
tutorial |
staff |
|
12:00 - 1:00 |
Lunch |
|
|
1:00 - 1:30 |
talk |
Lilla Zöllei |
|
1:30 - 1:45 |
talk |
Doug Greve |
|
1:45 - 2:15 |
talk |
Doug Greve |
|
2:15 - 3:00 |
tutorial |
staff |
|
3:00 - 3:15 |
break |
|
|
3:15 - 3:30 |
talk |
Doug Greve |
|
3:30 - 4:30 |
Future Directions |
talk |
FS Development Team |
4:30 - 5:00 |
Question & Answer Session |
|
staff |
Answers to online questions here
FreeSurfer Merchandise
Enjoyed our course? Purchase our awesome FreeSurfer T-shirts here.